Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010684

Physical Location & Seq

Genomic Coordinates Forward (+)

10747205 .. 10756324

Gene Structure 9120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1118500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2532 bp

ATGGCCTTGGTTGTGGCTCGCCACAGGGAGAGCAGCAGTGGGAGCAGCATAAACAAGCACCTCGATGCCGGAAAATATGTCCGTTACACATCTGAGCAAGTGGAAGCTCTTGAGAGAGTCTACGCCGAGTGCCCCAAGCCGAGCTCTCTGCGTAGGCAACAATTGATCCGGGAGTGCCCCATTTTATCAAACATTGAGCCCAGACAGATCAAAGTCTGGTTCCAGAACCGCAGGTGTAGGGAGAAGCAGAGAAAAGAGTCCTCAAGACTGCAGATTGTAAACAGAAAGTTATCAGCAATGAACAAACTGCTGATGGAGGAAAATGATCGATTGCAGAAACAAGTCTCTCAGCTTGTTTGTGAAAATGGTTATATGCGCCAACAATTGCATACTGCACCAGCTGCAACTACTGATGCAAGCTGTGACTCTCTGGTGACAACTCCTCAGCATTCTCTTAGAGATGCTAATAACCCTGCTGGACTCCTATCCATAGCGGAGGAGACCTTGGCAGAGTTCCTATCCAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCAAGAGCCTGTGGCCTCGTAAGTTTAGAGCCTACGAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTCCGGGACTGTCGGAGCCTTGAAGTTTTTACCATGTTTCCTGCTGGAAATGGAGGAACCATAGAACTTATATATACACAGACATACGCTCCAACTACTTTGGCTCCTGCAAGGGATTTTTGGACCCTGAGATACACTACAACTCTAGACAATGGCAGTTTTGTGGTGTGTGAAAGATCTCTTTCCGGTTCTGGCGCTGGCCCAAATCCAGCTTCTGCTTCACAGTTTGTTAGAGGCGCGATGCTTCCTAGTGGTTATCTGATTCGACCATGTGAGGGTGGAGGATCAATCATTCATATTGTTGACCACCTGAATCTTGAGGCATGGAGTGTGCCAGAGGTGCTGCGACCGCTTTATGAATCGTCCAAAGTGGTAGCACAAAGAATGACTATTGCGGCGTTACGGTATATCAGGCAAATAGCTCAGGAAACGAGTGGTGAAGTGGTATACAGTTTGGGCAGGCAGCCAGCTGTTCTGCGAACCTTTAGCCAAAGATTGATCAGAGGCTTCAATGATGCTGTCAATGGATTCAATGACGATGGATGGTCATTGGTCAACTGTGATGGTGCTGAAGATGTTATAATTACAGTTAATTCAACCAAGAATTTAACTTCTACTTCGAACCATGCCAATTCCCTTGCATTACTCGGAGGCATTCTTTGTGCAAAGGCTTCCATGTTACTACAAAATGTTCCCCCAGCTGTTCTCGTTCGTTTCTTGAGGGAGCACCGTTCAGAGTGGGCAGATTTCAATGTTGATGCCTACTCTGCTGCATCTTTGAAAGCTGGTTCGTATGCTTATCCTGGGATGAGGCCAACAAGGTTTACTGGGGGACAAATTATCATGCCGCTTGGTCACACAATTGAACAAGAGGAGTTGCTTGAAGTTGTTCGACTTGAAGGTCATTCTCTCACTCAAGAGGATGCTTTTGCATCAAGGGATATTCATCTCTTGCAGATATGTAGTGGAGTTGATGAGAATGCTGCCGGAGCCTGTTCTGAGCTTGTTTTTGCCCCAATTGATGAGATGTTTCCAGATGATGCTCCCTTGCTTCCCTCTGGTTTCCGTATTATCCCATTGGATTCAAAAACAAGTGATTCAAGGGCTACTTTGAATACGCATCGAACATTAGATCTGGCATCGAGTCTTGAAGTGGGCTCAACAACGAGCAATGCAGCTGGAGATCTAACTACATTTCACAATACTCGATCAGTATTGACGATCGCCTTCCAGTTTCCGCTTGATAATAATCTACAAGAGAATGTGGCAAACATGGCACGGCAGTATGTTCGTAGCGTAATTTCATCCGTGCAGAGAGTTGCAATGGCTATATCTCCATCTGGATTGAGTCCGTCTGTGGTACCAAAACTATCTCCCAGCTCTCCAGAAGCTGATACACTGGCTCACTGGATCTGCCAGAGTTACAGTTATCATGTTGGGGGAGAACTGCTGAGACCTGATTCCTTTGGTGGTGACTCGATGTTGAAACATTTATGGCATCACCAAGATGCTATTTTGTGTTGTTCATTAAGGTCAATGCCGGTTTTCACGTTTGCAAACCAGGCAGGGCTTGACATGCTGGAAACAACATTAGTCGCCCTTCAGGACATCTCATTGGATAAGATTTTTGATGAGGCCGGACGCAAGACGTTGTGCGCAGACTTTTCTAAACTAATGAACCAGGGTTTTGCGTACTTGCCAGCCGGCATTTGCATGTCGACGATGGCTCGCCACGTGTCGTACGAACAAGCGATTGCATGGAAAGTACTTGCTGCAGAAGAAAACTGTGTCCATTGCCTGGCCTTCTCCTTCATAAACTGGTCTTTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

844

Amino Acids

92.52

Weight (kDa)

6.09

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	25 - 83	1e-15	Homeodomain
START	PF01852	164 - 371	2.8e-47	START domain
MEKHLA	PF08670	699 - 842	6.3e-43	MEKHLA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60690
fragaria_vesca	FvH4_3g32190 FvH4_3g32190 FvH4_3g32190 FvH4_3g32190
malus_domestica	MD03G1118500.v1.1 MD11G1136800.v1.1
prunus_persica	Prupe.6G102300_v2.0.a1
pyrus_communis	pycom11g11330
rosa_chinensis	RchiOBHm_Chr5g0058801
rosa_laevigata	RLG00000035251
rosa_multiflora	Rmu_sc0005911.1_g000011 Rmu_sc0041020.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021600
rosa_rugosa	Rorug05G0319200
rosa_samantha	Rh5AG384000 Rh5BG395900 Rh5CG419800 Rh5DG411600
rosa_wichuraiana	Rw5G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1280
AarI	CACCTGC	1 cut(s)	222
AasI	GACNNNNNNGTC	1 cut(s)	1599
Acc16I	TGCGCA	1 cut(s)	2356
Acc36I	ACCTGC	1 cut(s)	222
Acc65I	GGTACC	1 cut(s)	2059
AccB1I	GGYRCC	1 cut(s)	2059
AccB7I	CCANNNNNTGG	1 cut(s)	2497
AccI	GTMKAC	3 cut(s)	120, 1146, 2417
AccII	CGCG	1 cut(s)	938
AccIII	TCCGGA	1 cut(s)	577
AciI	CCGC	6 cut(s)	229, 494, 1049, 1094, 1547, 1937
AclWI	GGATC	5 cut(s)	160, 599, 670, 991, 2117
AcsI	RAATTY	1 cut(s)	1303
AcuI	CTGAAG	2 cut(s)	1290, 2285
AcvI	CACGTG	1 cut(s)	2434
AfaI	GTAC	4 cut(s)	2061, 2393, 2441, 2466
AfiI	CCNNNNNNNGG	3 cut(s)	523, 974, 2497
AflIII	ACRYGT	1 cut(s)	2433
AjnI	CCWGG	6 cut(s)	559, 571, 1501, 2259, 2379, 2496
AjuI	GAANNNNNNNTTGG	2 cut(s)	895, 927
Alw21I	GWGCWC	2 cut(s)	146, 1428
Alw26I	GTCTC	3 cut(s)	349, 494, 2146
AlwI	GGATC	5 cut(s)	160, 599, 670, 991, 2117
AlwNI	CAGNNNCTG	3 cut(s)	536, 914, 2090
Aor13HI	TCCGGA	1 cut(s)	577
AoxI	GGCC	6 cut(s)	3, 640, 898, 1511, 2334, 2499
ApoI	RAATTY	1 cut(s)	1303
Asp700I	GAANNNNTTC	1 cut(s)	1587
Asp718I	GGTACC	1 cut(s)	2059
AspLEI	GCGC	4 cut(s)	378, 896, 938, 2357
AspS9I	GGNCC	4 cut(s)	550, 575, 822, 899
AsuC2I	CCSGG	2 cut(s)	170, 704
AsuHPI	GGTGA	4 cut(s)	445, 1148, 2183, 2192
AsuII	TTCGAA	1 cut(s)	1319
AvaII	GGWCC	3 cut(s)	550, 575, 822
BaeGI	GKGCMC	2 cut(s)	134, 179
BanI	GGYRCC	1 cut(s)	2059
BanII	GRGCYC	3 cut(s)	146, 201, 1859
BbrPI	CACGTG	1 cut(s)	2434
Bbv12I	GWGCWC	2 cut(s)	146, 1428
BbvCI	CCTCAGC	1 cut(s)	444
BccI	CCATC	7 cut(s)	307, 700, 1232, 1236, 1256, 2044, 2416
BceAI	ACGGC	1 cut(s)	1994
BcgI	CGANNNNNNTGC	4 cut(s)	130, 164, 1970, 2004
BciT130I	CCWGG	6 cut(s)	561, 573, 1503, 2261, 2381, 2498
BclI	TGATCA	1 cut(s)	1197
BcnI	CCSGG	2 cut(s)	170, 704
BcoDI	GTCTC	3 cut(s)	349, 494, 2146
BfaI	CTAG	2 cut(s)	845, 948
BfmI	CTRYAG	3 cut(s)	269, 528, 2472
BfoI	RGCGCY	1 cut(s)	897
BfuAI	ACCTGC	1 cut(s)	222
BglII	AGATCT	3 cut(s)	875, 1831, 1882
BmcAI	AGTACT	1 cut(s)	2466
Bme1390I	CCNGG	8 cut(s)	170, 561, 573, 704, 1503, 2261, 2381, 2498
Bme18I	GGWCC	3 cut(s)	550, 575, 822
BmgT120I	GGNCC	4 cut(s)	550, 575, 822, 899
BmiI	GGNNCC	9 cut(s)	221, 551, 701, 716, 757, 804, 824, 1690, 2061
BmrFI	CCNGG	8 cut(s)	170, 561, 573, 704, 1503, 2261, 2381, 2498
BmrI	ACTGGG	1 cut(s)	1536
BmuI	ACTGGG	1 cut(s)	1536
BpmI	CTGGAG	2 cut(s)	1899, 2067
Bpu10I	CCTNAGC	2 cut(s)	444, 1122
Bpu14I	TTCGAA	1 cut(s)	1319
BpuEI	CTTGAG	5 cut(s)	131, 247, 1037, 1438, 1599
BpuMI	CCSGG	2 cut(s)	170, 704
Bsa29I	ATCGAT	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	2434
BsaBI	GATNNNNATC	2 cut(s)	1644, 1947
BsaI	GGTCTC	2 cut(s)	494, 2146
BsaJI	CCNNGG	6 cut(s)	6, 504, 522, 560, 1502, 2380
BsaWI	WCCGGW	2 cut(s)	577, 884
BsaXI	ACNNNNNCTCC	4 cut(s)	772, 787, 802, 817
Bsc4I	CCNNNNNNNGG	3 cut(s)	523, 974, 2497
Bse118I	RCCGGY	2 cut(s)	2239, 2402
Bse1I	ACTGG	5 cut(s)	1531, 1930, 2103, 2111, 2522
Bse3DI	GCAATG	4 cut(s)	303, 1876, 2028, 2491
Bse8I	GATNNNNATC	2 cut(s)	1644, 1947
BseAI	TCCGGA	1 cut(s)	577
BseBI	CCWGG	6 cut(s)	561, 573, 1503, 2261, 2381, 2498
BseCI	ATCGAT	1 cut(s)	328
BseDI	CCNNGG	6 cut(s)	6, 504, 522, 560, 1502, 2380
BseGI	GGATG	5 cut(s)	570, 1247, 1512, 1627, 2003
BseJI	GATNNNNATC	2 cut(s)	1644, 1947
BseLI	CCNNNNNNNGG	3 cut(s)	523, 974, 2497
BseMI	GCAATG	4 cut(s)	303, 1876, 2028, 2491
BseMII	CTCAG	7 cut(s)	84, 362, 458, 818, 1136, 1689, 2141
BseNI	ACTGG	5 cut(s)	1531, 1930, 2103, 2111, 2522
BseRI	GAGGAG	3 cut(s)	432, 512, 1586
BseSI	GKGCMC	2 cut(s)	134, 179
BseYI	CCCAGC	2 cut(s)	1396, 2075
BsgI	GTGCAG	2 cut(s)	378, 2030
Bsh1236I	CGCG	1 cut(s)	938
Bsh1285I	CGRYCG	2 cut(s)	1049, 1923
BshFI	GGCC	6 cut(s)	5, 642, 900, 1513, 2336, 2501
BshNI	GGYRCC	1 cut(s)	2059
BshVI	ATCGAT	1 cut(s)	328
BsiEI	CGRYCG	2 cut(s)	1049, 1923
BsiHKAI	GWGCWC	2 cut(s)	146, 1428
BsiSI	CCGG	9 cut(s)	69, 169, 578, 703, 885, 1686, 2240, 2337, 2403
BsiWI	CGTACG	1 cut(s)	2439
BslFI	GGGAC	2 cut(s)	719, 1545
BslI	CCNNNNNNNGG	3 cut(s)	523, 974, 2497
BsmAI	GTCTC	3 cut(s)	349, 494, 2146
BsmFI	GGGAC	2 cut(s)	719, 1545
BsmI	GAATGC	3 cut(s)	448, 1353, 1684
BsnI	GGCC	6 cut(s)	5, 642, 900, 1513, 2336, 2501
Bso31I	GGTCTC	2 cut(s)	494, 2146
Bsp119I	TTCGAA	1 cut(s)	1319
Bsp1286I	GDGCHC	6 cut(s)	134, 146, 179, 201, 1428, 1859
Bsp13I	TCCGGA	1 cut(s)	577
BspACI	CCGC	6 cut(s)	229, 494, 1049, 1094, 1547, 1937
BspANI	GGCC	6 cut(s)	5, 642, 900, 1513, 2336, 2501
BspCNI	CTCAG	7 cut(s)	85, 361, 457, 819, 1135, 1690, 2142
BspDI	ATCGAT	1 cut(s)	328
BspEI	TCCGGA	1 cut(s)	577
BspFNI	CGCG	1 cut(s)	938
BspLI	GGNNCC	9 cut(s)	221, 551, 701, 716, 757, 804, 824, 1690, 2061
BspMAI	CTGCAG	2 cut(s)	273, 2476
BspMI	ACCTGC	1 cut(s)	222
BspPI	GGATC	5 cut(s)	160, 599, 670, 991, 2117
BspT104I	TTCGAA	1 cut(s)	1319
BspT107I	GGYRCC	1 cut(s)	2059
BspTNI	GGTCTC	2 cut(s)	494, 2146
BsrDI	GCAATG	4 cut(s)	303, 1876, 2028, 2491
BsrFI	RCCGGY	2 cut(s)	2239, 2402
BsrI	ACTGG	5 cut(s)	1531, 1930, 2103, 2111, 2522
BssAI	RCCGGY	2 cut(s)	2239, 2402
BssECI	CCNNGG	6 cut(s)	6, 504, 522, 560, 1502, 2380
BssNAI	GTATAC	1 cut(s)	1147
BssT1I	CCWWGG	3 cut(s)	6, 504, 522
Bst1107I	GTATAC	1 cut(s)	1147
Bst2UI	CCWGG	6 cut(s)	561, 573, 1503, 2261, 2381, 2498
Bst4CI	ACNGT	9 cut(s)	710, 924, 1104, 1151, 1259, 1288, 1430, 2126, 2486
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	2434
BstBI	TTCGAA	1 cut(s)	1319
BstC8I	GCNNGC	8 cut(s)	19, 418, 898, 1160, 1167, 2400, 2404, 2428
BstDEI	CTNAG	8 cut(s)	93, 348, 444, 455, 827, 1122, 1698, 2150
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	5 cut(s)	570, 1247, 1512, 1627, 2003
BstFNI	CGCG	1 cut(s)	938
BstH2I	RGCGCY	1 cut(s)	897
BstHHI	GCGC	4 cut(s)	378, 896, 938, 2357
BstMAI	GTCTC	3 cut(s)	349, 494, 2146
BstMCI	CGRYCG	2 cut(s)	1049, 1923
BstNI	CCWGG	6 cut(s)	561, 573, 1503, 2261, 2381, 2498
BstNSI	RCATGY	2 cut(s)	2278, 2416
BstSCI	CCNGG	8 cut(s)	168, 559, 571, 702, 1501, 2259, 2379, 2496
BstSFI	CTRYAG	3 cut(s)	269, 528, 2472
BstSLI	GKGCMC	2 cut(s)	134, 179
BstUI	CGCG	1 cut(s)	938
BstX2I	RGATCY	6 cut(s)	591, 675, 875, 1831, 1882, 2109
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstYI	RGATCY	6 cut(s)	591, 675, 875, 1831, 1882, 2109
BstZ17I	GTATAC	1 cut(s)	1147
Bsu15I	ATCGAT	1 cut(s)	328
BsuRI	GGCC	6 cut(s)	5, 642, 900, 1513, 2336, 2501
BsuTUI	ATCGAT	1 cut(s)	328
BtgZI	GCGATG	1 cut(s)	953
BtsCI	GGATG	5 cut(s)	570, 1247, 1512, 1627, 2003
BtsI	GCAGTG	2 cut(s)	43, 622
BtsIMutI	CAGTG	4 cut(s)	43, 622, 2096, 2104
BveI	ACCTGC	1 cut(s)	222
Cac8I	GCNNGC	8 cut(s)	19, 418, 898, 1160, 1167, 2400, 2404, 2428
CaiI	CAGNNNCTG	3 cut(s)	536, 914, 2090
CfoI	GCGC	4 cut(s)	378, 896, 938, 2357
Cfr10I	RCCGGY	2 cut(s)	2239, 2402
Cfr13I	GGNCC	4 cut(s)	550, 575, 822, 899
ClaI	ATCGAT	1 cut(s)	328
CseI	GACGC	1 cut(s)	2349
Csp6I	GTAC	4 cut(s)	2060, 2392, 2440, 2465
CviQI	GTAC	4 cut(s)	2060, 2392, 2440, 2465
DdeI	CTNAG	8 cut(s)	93, 348, 444, 455, 827, 1122, 1698, 2150
DrdI	GACNNNNNNGTC	1 cut(s)	1599
DseDI	GACNNNNNNGTC	1 cut(s)	1599
Ecl136II	GAGCTC	1 cut(s)	144
Eco130I	CCWWGG	3 cut(s)	6, 504, 522
Eco24I	GRGCYC	3 cut(s)	146, 201, 1859
Eco31I	GGTCTC	2 cut(s)	494, 2146
Eco47I	GGWCC	3 cut(s)	550, 575, 822
Eco53kI	GAGCTC	1 cut(s)	144
Eco57I	CTGAAG	2 cut(s)	1290, 2285
Eco72I	CACGTG	1 cut(s)	2434
EcoICRI	GAGCTC	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoRII	CCWGG	6 cut(s)	559, 571, 1501, 2259, 2379, 2496
EcoT14I	CCWWGG	3 cut(s)	6, 504, 522
EcoT38I	GRGCYC	3 cut(s)	146, 201, 1859
ErhI	CCWWGG	3 cut(s)	6, 504, 522
FalI	AAGNNNNNCTT	2 cut(s)	1792, 1824
FaqI	GGGAC	2 cut(s)	719, 1545
FbaI	TGATCA	1 cut(s)	1197
FblI	GTMKAC	3 cut(s)	120, 1146, 2417
FokI	GGATG	5 cut(s)	577, 1254, 1519, 1634, 1990
FriOI	GRGCYC	3 cut(s)	146, 201, 1859
FspBI	CTAG	2 cut(s)	845, 948
FspI	TGCGCA	1 cut(s)	2356
GlaI	GCGC	4 cut(s)	377, 895, 937, 2356
GsaI	CCCAGC	2 cut(s)	1400, 2079
GsuI	CTGGAG	2 cut(s)	1899, 2067
HaeII	RGCGCY	1 cut(s)	897
HaeIII	GGCC	6 cut(s)	5, 642, 900, 1513, 2336, 2501
HapII	CCGG	9 cut(s)	69, 169, 578, 703, 885, 1686, 2240, 2337, 2403
HgaI	GACGC	1 cut(s)	2349
HhaI	GCGC	4 cut(s)	378, 896, 938, 2357
Hin6I	GCGC	4 cut(s)	376, 894, 936, 2355
HinP1I	GCGC	4 cut(s)	376, 894, 936, 2355
HincII	GTYRAC	3 cut(s)	1003, 1255, 2418
HindII	GTYRAC	3 cut(s)	1003, 1255, 2418
HpaII	CCGG	9 cut(s)	69, 169, 578, 703, 885, 1686, 2240, 2337, 2403
HphI	GGTGA	4 cut(s)	445, 1148, 2183, 2192
Hpy166II	GTNNAC	7 cut(s)	121, 280, 1003, 1147, 1255, 1524, 2418
Hpy188I	TCNGA	7 cut(s)	94, 714, 960, 1202, 1349, 1435, 1699
Hpy8I	GTNNAC	7 cut(s)	121, 280, 1003, 1147, 1255, 1524, 2418
Hpy99I	CGWCG	1 cut(s)	2422
HpyAV	CCTTC	5 cut(s)	1592, 1936, 2309, 2512, 2518
HpyCH4III	ACNGT	9 cut(s)	710, 924, 1104, 1151, 1259, 1288, 1430, 2126, 2486
HpyCH4IV	ACGT	3 cut(s)	2249, 2348, 2433
HpyF3I	CTNAG	8 cut(s)	93, 348, 444, 455, 827, 1122, 1698, 2150
HpySE526I	ACGT	3 cut(s)	2249, 2348, 2433
HspAI	GCGC	4 cut(s)	376, 894, 936, 2355
Kpn2I	TCCGGA	1 cut(s)	577
KpnI	GGTACC	1 cut(s)	2063
KroI	GCCGGC	1 cut(s)	2402
KroNI	GCCGGC	1 cut(s)	2404
Ksp22I	TGATCA	1 cut(s)	1197
LmnI	GCTCC	7 cut(s)	42, 714, 793, 808, 1423, 1688, 1747
MaeI	CTAG	2 cut(s)	845, 948
MaeII	ACGT	3 cut(s)	2249, 2348, 2433
MaeIII	GTNAC	8 cut(s)	83, 422, 433, 1098, 1377, 1553, 2120, 2171
MboII	GAAGA	3 cut(s)	676, 1283, 2489
MfeI	CAATTG	4 cut(s)	161, 383, 1560, 1716
MflI	RGATCY	6 cut(s)	591, 675, 875, 1831, 1882, 2109
MhlI	GDGCHC	6 cut(s)	134, 146, 179, 201, 1428, 1859
MlyI	GAGTC	7 cut(s)	126, 266, 419, 474, 1852, 2056, 2168
MmeI	TCCRAC	2 cut(s)	692, 815
MroI	TCCGGA	1 cut(s)	577
MroNI	GCCGGC	1 cut(s)	2402
MroXI	GAANNNNTTC	1 cut(s)	1587
MseI	TTAA	4 cut(s)	681, 1290, 1307, 2228
MslI	CAYNNNNRTG	3 cut(s)	63, 2205, 2411
MspA1I	CMGCKG	4 cut(s)	401, 1169, 1400, 1877
MspI	CCGG	9 cut(s)	69, 169, 578, 703, 885, 1686, 2240, 2337, 2403
MspR9I	CCNGG	8 cut(s)	170, 561, 573, 704, 1503, 2261, 2381, 2498
MunI	CAATTG	4 cut(s)	161, 383, 1560, 1716
Mva1269I	GAATGC	3 cut(s)	448, 1353, 1684
MvaI	CCWGG	6 cut(s)	561, 573, 1503, 2261, 2381, 2498
MvnI	CGCG	1 cut(s)	938
NaeI	GCCGGC	1 cut(s)	2404
NciI	CCSGG	2 cut(s)	170, 704
NgoMIV	GCCGGC	1 cut(s)	2402
NlaIV	GGNNCC	9 cut(s)	221, 551, 701, 716, 757, 804, 824, 1690, 2061
NmeAIII	GCCGAG	2 cut(s)	151, 165
NmuCI	GTSAC	4 cut(s)	422, 433, 1553, 2171
NsbI	TGCGCA	1 cut(s)	2356
NspI	RCATGY	2 cut(s)	2278, 2416
NspV	TTCGAA	1 cut(s)	1319
PaqCI	CACCTGC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	2439
PctI	GAATGC	3 cut(s)	448, 1353, 1684
PdiI	GCCGGC	1 cut(s)	2404
PdmI	GAANNNNTTC	1 cut(s)	1587
PfeI	GAWTC	8 cut(s)	581, 961, 1012, 1058, 1227, 1781, 1796, 2159
Pfl23II	CGTACG	1 cut(s)	2439
PflMI	CCANNNNNTGG	1 cut(s)	2497
PfoI	TCCNGGA	2 cut(s)	168, 702
Ple19I	CGATCG	1 cut(s)	1923
PleI	GAGTC	7 cut(s)	125, 265, 419, 474, 1851, 2055, 2168
PmaCI	CACGTG	1 cut(s)	2434
PmlI	CACGTG	1 cut(s)	2434
PpsI	GAGTC	7 cut(s)	125, 265, 419, 474, 1851, 2055, 2168
Ppu21I	YACGTR	1 cut(s)	2434
PsiI	TTATAA	1 cut(s)	1280
Psp124BI	GAGCTC	1 cut(s)	146
Psp6I	CCWGG	6 cut(s)	559, 571, 1501, 2259, 2379, 2496
PspCI	CACGTG	1 cut(s)	2434
PspFI	CCCAGC	2 cut(s)	1396, 2075
PspGI	CCWGG	6 cut(s)	559, 571, 1501, 2259, 2379, 2496
PspLI	CGTACG	1 cut(s)	2439
PspN4I	GGNNCC	9 cut(s)	221, 551, 701, 716, 757, 804, 824, 1690, 2061
PspPI	GGNCC	4 cut(s)	550, 575, 822, 899
PstI	CTGCAG	2 cut(s)	273, 2476
PstNI	CAGNNNCTG	3 cut(s)	536, 914, 2090
PsuI	RGATCY	6 cut(s)	591, 675, 875, 1831, 1882, 2109
PvuI	CGATCG	1 cut(s)	1923
PvuII	CAGCTG	4 cut(s)	401, 1169, 1400, 1877
RsaI	GTAC	4 cut(s)	2061, 2393, 2441, 2466
RsaNI	GTAC	4 cut(s)	2060, 2392, 2440, 2465
RseI	CAYNNNNRTG	3 cut(s)	63, 2205, 2411
SacI	GAGCTC	1 cut(s)	146
SalI	GTCGAC	1 cut(s)	2416
SaqAI	TTAA	4 cut(s)	681, 1290, 1307, 2228
Sau96I	GGNCC	4 cut(s)	550, 575, 822, 899
ScaI	AGTACT	1 cut(s)	2466
SchI	GAGTC	7 cut(s)	126, 266, 419, 474, 1852, 2056, 2168
ScrFI	CCNGG	8 cut(s)	170, 561, 573, 704, 1503, 2261, 2381, 2498
SduI	GDGCHC	6 cut(s)	134, 146, 179, 201, 1428, 1859
SfcI	CTRYAG	3 cut(s)	269, 528, 2472
SfuI	TTCGAA	1 cut(s)	1319
SinI	GGWCC	3 cut(s)	550, 575, 822
SmiMI	CAYNNNNRTG	3 cut(s)	63, 2205, 2411
SmlI	CTYRAG	5 cut(s)	110, 262, 1016, 1417, 1614
SmoI	CTYRAG	5 cut(s)	110, 262, 1016, 1417, 1614
SsiI	CCGC	6 cut(s)	229, 494, 1049, 1094, 1547, 1937
SspMI	CTAG	2 cut(s)	845, 948
SstI	GAGCTC	1 cut(s)	146
StyD4I	CCNGG	8 cut(s)	168, 559, 571, 702, 1501, 2259, 2379, 2496
StyI	CCWWGG	3 cut(s)	6, 504, 522
TaaI	ACNGT	9 cut(s)	710, 924, 1104, 1151, 1259, 1288, 1430, 2126, 2486
TaiI	ACGT	3 cut(s)	2252, 2351, 2436
TatI	WGTACW	1 cut(s)	2464
TauI	GCSGC	2 cut(s)	1097, 1549
TfiI	GAWTC	8 cut(s)	581, 961, 1012, 1058, 1227, 1781, 1796, 2159
Tru1I	TTAA	4 cut(s)	681, 1290, 1307, 2228
Tru9I	TTAA	4 cut(s)	681, 1290, 1307, 2228
TscAI	CASTG	4 cut(s)	43, 622, 2103, 2111
TseFI	GTSAC	4 cut(s)	422, 433, 1553, 2171
Tsp45I	GTSAC	4 cut(s)	422, 433, 1553, 2171
TspDTI	ATGAA	9 cut(s)	314, 581, 983, 1071, 1634, 1992, 2214, 2390, 2500
TspGWI	ACGGA	4 cut(s)	71, 1754, 1996, 2040
TspRI	CASTG	4 cut(s)	43, 622, 2103, 2111
Van91I	CCANNNNNTGG	1 cut(s)	2497
VpaK11BI	GGWCC	3 cut(s)	550, 575, 822
XagI	CCTNNNNNAGG	1 cut(s)	521
XapI	RAATTY	1 cut(s)	1303
XbaI	TCTAGA	1 cut(s)	844
XceI	RCATGY	2 cut(s)	2278, 2416
XmiI	GTMKAC	3 cut(s)	120, 1146, 2417
XmnI	GAANNNNTTC	1 cut(s)	1587
XspI	CTAG	2 cut(s)	845, 948
ZrmI	AGTACT	1 cut(s)	2466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.