Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010684

Physical Location & Seq

Genomic Coordinates Reverse (-)

63692248 .. 63699544

Gene Structure 7297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035251

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2671 bp

ATGTCGAGAAAAGCAGAGAAAAGAGTCTTCCAGGCTTCAGACTGTTAACAGGAAATTATCAGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGACTGCAGAAACAGGTGTCTCAGCTTGTTTGTGAGAATGGGTACATGCGCCAACAGCTGCATACTGTACCAGCTACTGATGCAAGCTGCGACTCTGTGGTTACAACTCCTCAGCATTCTCTCAGAGATGCTAATAATCCTGCTGGACTCCTCTCCATAGCGGAGGAGACCTTGGCAGAGTTCCTTTCTAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCTATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTCGTAAGTTTAGAGCCTACGAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTCCGGGACTGTCGGAGCCTTGAAGTTTTTACAATGTTTCCTGCTGGAAATGGAGGGACTATAGAACTCATATATACGCAGACATATGCTCCGACTACACTGGCTCCTGCAAGGGATTTCTGGACCCTAAGATACACTACTACTTTAGACAATGGCAGTTTTGTGGTATGTGAGAGATCTCTTTCTGGTTCTGGTGCTGGCCCCAATGGAGCTTCTGCTGCCCAGTTTGTTAGAGCAGAAATGCTTCCTAGTGGTTATCTGATTCGACCGTGTGAGGGTGGAGGATCAATCATTCATATTGTTGACCACCTGAACCTTGAGGCTTGGAGTGTGCCAGAAGTGCTGCGACCGCTTTATGAATCGTCCAAAGTGGTAGCACAAAAAAGGACTATTGCGGCATTGCGTTACATCAGGCAAATAGCTCAGGAGACGAGTGGTGAAGTTGTGTACAGTTTTGGCAGGCAGCCAGCTGTTCTGCGAACTTTTAGCCAAAGATTAATCAGAGGCTTTAATGATGCTGTCAATGGATTTAATGATGATGGCTGGTCATTGATCAACTGTGATGGTGCTGAAGACATTATAATGGCCGTTAATTCAACCAAGAATTTGACTACTACAAATCCTGCTAATTCCTTTGCTTTTCTTGGTGGTATTCTGTGTGCAAAGGCTTCCATGCTACTCCAAAATGTCCCCCCAGCTGTCCTGGTTCGTTTCTTGAGGGAGCATCGTTCAGAGTGGGCTGATTTCAATGTTGATGCCTATTCTGCTGCGTCTTTGAAATCTGGTTCATATGCATACCCAGGGATGAGGCCAACAAGGTTTACTGGGGGCCAAATCATCATGCCACTTGGTCACACCATTGAACACGAAGAGTTGCTAGAAGTTGTTCGTCTCGAAGGCCATTCTTTCTCTCAAGAAGAAGCATTTGCATCACGGGACATTCATCTCTTACAGATATGTAGTGGAGTTGATGAGAATGCTGTTGGAGCCTGTTCGGAGCTTGTTTTTGCGCCAATTGATGAGATGTTTCCAGACGATGCTCCGTTGCTTCCCTCTGGTTTCCGCATTATTCCTTTGGAATCAAAAACAAGTGATTCAAAAGACGCCATGGCTACTCATCGGACATTAGATCTGACGTCCAGTCTTGAAGTGGGCTCAACAACAAACCATAATGCTGGAGATTTGAATTCATTTCATAACGCTCGATCAGTATTAACGATTGCCTTCCAGTTTCCCTTCGAGAGTAGTCTACAGGATAATGTTGCATCCATGGCACGCCAATATGTACGAAATGTCATTTCATCAGTGCAGAGAGTTGCAATGGCTATATCTCCATCAGGATTGAGTCCGTCCGTGGGACCAAAATTATCTCCCAGCTCTCCAGAAGCACTGACACTGGCTAACTGGATCTGCCAGAGCTATAGTTATCATATAGGGGCGGAACTGCTGCAGCCTGATTCCTTGGGTGGTGACTCGATGTTGAAACATCTATGGCATCATCAAGATGCAATTTTGTGCTGTTCATTGAAGTCATTGCCGGTTTTCATCTTTGCTAACCAGGCAGGGCTTGACATGCTGGAGACAACTCTTGTTGCTCTTCAGGACATCTCATTAGATAAGATTTTTGATGAGTGTGGACGTAAGACATTGTGCGCCGACTTTGCTAAACTAATGCAGCAGGGATTTGCTTACTTGCCAGCTGGGATTTGCATGTCAACAATGGGTCGCCATATCTCATATGAACAGGCCATTGGATGGAAAGTTCTTTCTGGAGAAGATAACTCTGTCCATTGCCTTGCCTTCTCTTTTATCTTTTCAAGAACTTGTGAAAGTCGGACTGCAAATATACGTACATGGAATGCTAAAGCCCTGTGGCGGAACGTTCACAGGCCGAGGGGCACATCAAGAGAGTTTGGTGTGAGGGATGTTGTTGCAGATGAGAAAGCCGGGCTTCGAAATCGGAATTGCAGTGGAGAGCGGTGTTGGCCAACGAAGGATTATGGGATGGAGGTGATTGTGGAAGTAGGTAGTACGTGGTGTTGGAAAGGAGGAGTGGAGTCAGAAAGGGGTGGTGGAGAGTTATGTATTGGCGGTGGTGGGTTGGACATGCCCAGTCCAGATCATGTACTGCCGGTGAGGCTGAGAGATCCAAATGTAATTAGAGGGGTTGTGGGCACAACCTGGCTGTTGATGCTGGAGGAGAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

890

Amino Acids

97.36

Weight (kDa)

5.86

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	84 - 292	2.6e-48	START domain
MEKHLA	PF08670	618 - 756	8.9e-42	MEKHLA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60690
fragaria_vesca	FvH4_3g32190 FvH4_3g32190 FvH4_3g32190 FvH4_3g32190
malus_domestica	MD03G1118500.v1.1 MD11G1136800.v1.1
prunus_persica	Prupe.6G102300_v2.0.a1
pyrus_communis	pycom11g11330
rosa_chinensis	RchiOBHm_Chr5g0058801
rosa_laevigata	RLG00000035251
rosa_multiflora	Rmu_sc0005911.1_g000011 Rmu_sc0041020.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021600
rosa_rugosa	Rorug05G0319200
rosa_samantha	Rh5AG384000 Rh5BG395900 Rh5CG419800 Rh5DG411600
rosa_wichuraiana	Rw5G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1041
AatII	GACGTC	1 cut(s)	1599
AccB7I	CCANNNNNTGG	1 cut(s)	2215
AccBSI	CCGCTC	1 cut(s)	2438
AccI	GTMKAC	1 cut(s)	1709
AccIII	TCCGGA	1 cut(s)	338
AciI	CCGC	8 cut(s)	255, 810, 855, 1523, 1899, 2336, 2438, 2551
AclI	AACGTT	1 cut(s)	2341
AclWI	GGATC	5 cut(s)	360, 431, 752, 1875, 2601
AcoI	YGGCCR	2 cut(s)	1045, 2445
AcsI	RAATTY	2 cut(s)	1064, 1646
AcuI	CTGAAG	3 cut(s)	21, 1051, 2043
AcyI	GRCGYC	2 cut(s)	1564, 1596
AfaI	GTAC	7 cut(s)	138, 163, 909, 1747, 2312, 2492, 2587
AfiI	CCNNNNNNNGG	5 cut(s)	284, 735, 1815, 2215, 2335
AhdI	GACNNNNNGTC	1 cut(s)	1600
AjnI	CCWGG	7 cut(s)	30, 320, 332, 1162, 1259, 2017, 2640
AjuI	GAANNNNNNNTTGG	2 cut(s)	2194, 2226
AloI	GAACNNNNNNTCC	2 cut(s)	2206, 2238
Alw26I	GTCTC	6 cut(s)	118, 255, 408, 882, 1356, 2034
AlwI	GGATC	5 cut(s)	360, 431, 752, 1875, 2601
AlwNI	CAGNNNCTG	2 cut(s)	171, 297
Ama87I	CYCGRG	1 cut(s)	391
Aor13HI	TCCGGA	1 cut(s)	338
AoxI	GGCC	8 cut(s)	659, 1045, 1269, 1289, 1358, 2206, 2349, 2445
ApoI	RAATTY	2 cut(s)	1064, 1646
AseI	ATTAAT	1 cut(s)	957
Asp700I	GAANNNNTTC	2 cut(s)	703, 1345
AspLEI	GCGC	3 cut(s)	145, 1472, 2115
AspS9I	GGNCC	6 cut(s)	311, 336, 583, 660, 1289, 1818
AsuC2I	CCSGG	2 cut(s)	465, 2408
AsuHPI	GGTGA	4 cut(s)	909, 1941, 2483, 2606
AsuII	TTCGAA	1 cut(s)	2414
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	4 cut(s)	311, 336, 583, 1818
BaeGI	GKGCMC	2 cut(s)	2361, 2637
BalI	TGGCCA	1 cut(s)	2447
BanII	GRGCYC	1 cut(s)	1617
BbsI	GAAGAC	2 cut(s)	19, 1039
BbvCI	CCTCAGC	1 cut(s)	205
BccI	CCATC	7 cut(s)	74, 461, 993, 1017, 1802, 2209, 2459
BceAI	ACGGC	1 cut(s)	1032
BciT130I	CCWGG	7 cut(s)	32, 322, 334, 1164, 1261, 2019, 2642
BclI	TGATCA	1 cut(s)	1012
BcnI	CCSGG	2 cut(s)	465, 2408
BcoDI	GTCTC	6 cut(s)	118, 255, 408, 882, 1356, 2034
BfaI	CTAG	2 cut(s)	709, 1338
BfmI	CTRYAG	6 cut(s)	99, 289, 520, 1710, 1880, 1908
BglI	GCCNNNNNGGC	1 cut(s)	2597
BglII	AGATCT	2 cut(s)	636, 1589
Bme1390I	CCNGG	9 cut(s)	32, 322, 334, 465, 1164, 1261, 2019, 2408, 2642
Bme18I	GGWCC	4 cut(s)	311, 336, 583, 1818
BmeRI	GACNNNNNGTC	1 cut(s)	1600
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	6 cut(s)	311, 336, 583, 660, 1289, 1818
BmiI	GGNNCC	9 cut(s)	312, 462, 477, 565, 585, 662, 1290, 1448, 1819
BmrFI	CCNGG	9 cut(s)	32, 322, 334, 465, 1164, 1261, 2019, 2408, 2642
BmrI	ACTGGG	3 cut(s)	677, 1294, 2566
BmuI	ACTGGG	3 cut(s)	677, 1294, 2566
BpiI	GAAGAC	2 cut(s)	19, 1039
BpmI	CTGGAG	4 cut(s)	1657, 1825, 2058, 2251
Bpu10I	CCTNAGC	2 cut(s)	205, 883
Bpu14I	TTCGAA	1 cut(s)	2414
BpuEI	CTTGAG	3 cut(s)	798, 1196, 1357
BpuMI	CCSGG	2 cut(s)	465, 2408
BsaAI	YACGTR	2 cut(s)	2310, 2494
BsaHI	GRCGYC	2 cut(s)	1564, 1596
BsaI	GGTCTC	2 cut(s)	255, 408
BsaJI	CCNNGG	9 cut(s)	265, 321, 1259, 1260, 1567, 1729, 1813, 1921, 2352
BsaWI	WCCGGW	1 cut(s)	338
BsaXI	ACNNNNNCTCC	4 cut(s)	533, 548, 563, 578
Bsc4I	CCNNNNNNNGG	5 cut(s)	284, 735, 1815, 2215, 2335
Bse118I	RCCGGY	2 cut(s)	1997, 2591
Bse1I	ACTGG	8 cut(s)	565, 683, 1289, 1600, 1688, 1861, 1869, 2572
Bse3DI	GCAATG	5 cut(s)	70, 858, 1786, 1992, 2249
BseAI	TCCGGA	1 cut(s)	338
BseBI	CCWGG	7 cut(s)	32, 322, 334, 1164, 1261, 2019, 2642
BseDI	CCNNGG	9 cut(s)	265, 321, 1259, 1260, 1567, 1729, 1813, 1921, 2352
BseGI	GGATG	6 cut(s)	331, 1270, 1725, 2220, 2390, 2470
BseLI	CCNNNNNNNGG	5 cut(s)	284, 735, 1815, 2215, 2335
BseMI	GCAATG	5 cut(s)	70, 858, 1786, 1992, 2249
BseMII	CTCAG	5 cut(s)	129, 219, 230, 897, 2592
BseNI	ACTGG	8 cut(s)	565, 683, 1289, 1600, 1688, 1861, 1869, 2572
BseRI	GAGGAG	4 cut(s)	193, 234, 273, 2524
BseSI	GKGCMC	2 cut(s)	2361, 2637
BseYI	CCCAGC	3 cut(s)	1154, 1833, 2160
BsgI	GTGCAG	1 cut(s)	1788
Bsh1285I	CGRYCG	2 cut(s)	729, 810
BshFI	GGCC	8 cut(s)	661, 1047, 1271, 1291, 1360, 2208, 2351, 2447
BsiEI	CGRYCG	2 cut(s)	729, 810
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	5 cut(s)	339, 464, 1998, 2407, 2592
BslFI	GGGAC	5 cut(s)	480, 530, 1134, 1410, 1831
BslI	CCNNNNNNNGG	5 cut(s)	284, 735, 1815, 2215, 2335
BsmAI	GTCTC	6 cut(s)	118, 255, 408, 882, 1356, 2034
BsmBI	CGTCTC	2 cut(s)	882, 1356
BsmFI	GGGAC	5 cut(s)	480, 530, 1134, 1410, 1831
BsmI	GAATGC	3 cut(s)	209, 1442, 2324
BsnI	GGCC	8 cut(s)	661, 1047, 1271, 1291, 1360, 2208, 2351, 2447
Bso31I	GGTCTC	2 cut(s)	255, 408
BsoBI	CYCGRG	1 cut(s)	391
Bsp119I	TTCGAA	1 cut(s)	2414
Bsp1286I	GDGCHC	3 cut(s)	1617, 2361, 2637
Bsp13I	TCCGGA	1 cut(s)	338
Bsp1407I	TGTACA	1 cut(s)	907
Bsp19I	CCATGG	2 cut(s)	1567, 1729
BspACI	CCGC	8 cut(s)	255, 810, 855, 1523, 1899, 2336, 2438, 2551
BspANI	GGCC	8 cut(s)	661, 1047, 1271, 1291, 1360, 2208, 2351, 2447
BspCNI	CTCAG	5 cut(s)	128, 218, 229, 896, 2593
BspEI	TCCGGA	1 cut(s)	338
BspLI	GGNNCC	9 cut(s)	312, 462, 477, 565, 585, 662, 1290, 1448, 1819
BspMAI	CTGCAG	2 cut(s)	103, 1912
BspPI	GGATC	5 cut(s)	360, 431, 752, 1875, 2601
BspQI	GCTCTTC	1 cut(s)	2062
BspT104I	TTCGAA	1 cut(s)	2414
BspTNI	GGTCTC	2 cut(s)	255, 408
BsrBI	CCGCTC	1 cut(s)	2438
BsrDI	GCAATG	5 cut(s)	70, 858, 1786, 1992, 2249
BsrFI	RCCGGY	2 cut(s)	1997, 2591
BsrGI	TGTACA	1 cut(s)	907
BsrI	ACTGG	8 cut(s)	565, 683, 1289, 1600, 1688, 1861, 1869, 2572
BssAI	RCCGGY	2 cut(s)	1997, 2591
BssECI	CCNNGG	9 cut(s)	265, 321, 1259, 1260, 1567, 1729, 1813, 1921, 2352
BssNI	GRCGYC	2 cut(s)	1564, 1596
BssT1I	CCWWGG	4 cut(s)	265, 1567, 1729, 1921
Bst2UI	CCWGG	7 cut(s)	32, 322, 334, 1164, 1261, 2019, 2642
Bst4CI	ACNGT	6 cut(s)	44, 161, 471, 730, 912, 1020
Bst6I	CTCTTC	2 cut(s)	1324, 2062
BstACI	GRCGYC	2 cut(s)	1564, 1596
BstAUI	TGTACA	1 cut(s)	907
BstBAI	YACGTR	2 cut(s)	2310, 2494
BstBI	TTCGAA	1 cut(s)	2414
BstC8I	GCNNGC	6 cut(s)	179, 659, 921, 928, 1736, 2158
BstDEI	CTNAG	7 cut(s)	115, 205, 216, 283, 588, 883, 2601
BstDSI	CCRYGG	3 cut(s)	1567, 1729, 1813
BstENI	CCTNNNNNAGG	1 cut(s)	282
BstF5I	GGATG	6 cut(s)	331, 1270, 1725, 2220, 2390, 2470
BstHHI	GCGC	3 cut(s)	145, 1472, 2115
BstMAI	GTCTC	6 cut(s)	118, 255, 408, 882, 1356, 2034
BstMCI	CGRYCG	2 cut(s)	729, 810
BstNI	CCWGG	7 cut(s)	32, 322, 334, 1164, 1261, 2019, 2642
BstNSI	RCATGY	4 cut(s)	143, 2036, 2174, 2570
BstSCI	CCNGG	9 cut(s)	30, 320, 332, 463, 1162, 1259, 2017, 2406, 2640
BstSFI	CTRYAG	6 cut(s)	99, 289, 520, 1710, 1880, 1908
BstSLI	GKGCMC	2 cut(s)	2361, 2637
BstSNI	TACGTA	1 cut(s)	2310
BstV2I	GAAGAC	2 cut(s)	19, 1039
BstX2I	RGATCY	6 cut(s)	352, 436, 636, 1589, 1867, 2606
BstXI	CCANNNNNNTGG	2 cut(s)	321, 1635
BstYI	RGATCY	6 cut(s)	352, 436, 636, 1589, 1867, 2606
BsuRI	GGCC	8 cut(s)	661, 1047, 1271, 1291, 1360, 2208, 2351, 2447
BtgI	CCRYGG	3 cut(s)	1567, 1729, 1813
BtsCI	GGATG	6 cut(s)	331, 1270, 1725, 2220, 2390, 2470
BtsI	GCAGTG	2 cut(s)	383, 2435
BtsIMutI	CAGTG	6 cut(s)	383, 558, 1771, 1848, 1854, 2435
Cac8I	GCNNGC	6 cut(s)	179, 659, 921, 928, 1736, 2158
CaiI	CAGNNNCTG	2 cut(s)	171, 297
CfoI	GCGC	3 cut(s)	145, 1472, 2115
Cfr10I	RCCGGY	2 cut(s)	1997, 2591
Cfr13I	GGNCC	6 cut(s)	311, 336, 583, 660, 1289, 1818
CseI	GACGC	2 cut(s)	1219, 1572
Csp6I	GTAC	7 cut(s)	137, 162, 908, 1746, 2311, 2491, 2586
CviQI	GTAC	7 cut(s)	137, 162, 908, 1746, 2311, 2491, 2586
DdeI	CTNAG	7 cut(s)	115, 205, 216, 283, 588, 883, 2601
DriI	GACNNNNNGTC	1 cut(s)	1600
EaeI	YGGCCR	2 cut(s)	1045, 2445
Eam1104I	CTCTTC	2 cut(s)	1324, 2062
Eam1105I	GACNNNNNGTC	1 cut(s)	1600
EarI	CTCTTC	2 cut(s)	1324, 2062
EciI	GGCGGA	2 cut(s)	1914, 2351
Eco105I	TACGTA	1 cut(s)	2310
Eco130I	CCWWGG	4 cut(s)	265, 1567, 1729, 1921
Eco24I	GRGCYC	1 cut(s)	1617
Eco31I	GGTCTC	2 cut(s)	255, 408
Eco47I	GGWCC	4 cut(s)	311, 336, 583, 1818
Eco57I	CTGAAG	3 cut(s)	21, 1051, 2043
Eco88I	CYCGRG	1 cut(s)	391
EcoNI	CCTNNNNNAGG	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	1646
EcoRII	CCWGG	7 cut(s)	30, 320, 332, 1162, 1259, 2017, 2640
EcoT14I	CCWWGG	4 cut(s)	265, 1567, 1729, 1921
EcoT22I	ATGCAT	1 cut(s)	1256
EcoT38I	GRGCYC	1 cut(s)	1617
ErhI	CCWWGG	4 cut(s)	265, 1567, 1729, 1921
Esp3I	CGTCTC	2 cut(s)	882, 1356
FalI	AAGNNNNNCTT	2 cut(s)	2395, 2427
FaqI	GGGAC	5 cut(s)	480, 530, 1134, 1410, 1831
FauNDI	CATATG	3 cut(s)	545, 1250, 2198
FbaI	TGATCA	1 cut(s)	1012
FblI	GTMKAC	1 cut(s)	1709
FokI	GGATG	6 cut(s)	338, 1277, 1712, 2227, 2397, 2477
FriOI	GRGCYC	1 cut(s)	1617
FspBI	CTAG	2 cut(s)	709, 1338
GlaI	GCGC	3 cut(s)	144, 1471, 2114
GsaI	CCCAGC	3 cut(s)	1158, 1837, 2164
GsuI	CTGGAG	4 cut(s)	1657, 1825, 2058, 2251
HaeIII	GGCC	8 cut(s)	661, 1047, 1271, 1291, 1360, 2208, 2351, 2447
HapII	CCGG	5 cut(s)	339, 464, 1998, 2407, 2592
HgaI	GACGC	2 cut(s)	1219, 1572
HhaI	GCGC	3 cut(s)	145, 1472, 2115
Hin1I	GRCGYC	2 cut(s)	1564, 1596
Hin6I	GCGC	3 cut(s)	143, 1470, 2113
HinP1I	GCGC	3 cut(s)	143, 1470, 2113
HincII	GTYRAC	3 cut(s)	47, 764, 2176
HindII	GTYRAC	3 cut(s)	47, 764, 2176
HpaI	GTTAAC	1 cut(s)	47
HpaII	CCGG	5 cut(s)	339, 464, 1998, 2407, 2592
HphI	GGTGA	4 cut(s)	909, 1941, 2483, 2606
Hpy166II	GTNNAC	8 cut(s)	47, 764, 908, 1282, 1710, 2097, 2176, 2345
Hpy8I	GTNNAC	8 cut(s)	47, 764, 908, 1282, 1710, 2097, 2176, 2345
HpyAV	CCTTC	5 cut(s)	1350, 1694, 1706, 2270, 2447
HpyCH4III	ACNGT	6 cut(s)	44, 161, 471, 730, 912, 1020
HpyCH4IV	ACGT	5 cut(s)	1596, 2099, 2309, 2341, 2493
HpyF3I	CTNAG	7 cut(s)	115, 205, 216, 283, 588, 883, 2601
HpySE526I	ACGT	5 cut(s)	1596, 2099, 2309, 2341, 2493
Hsp92I	GRCGYC	2 cut(s)	1564, 1596
HspAI	GCGC	3 cut(s)	143, 1470, 2113
Kpn2I	TCCGGA	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	1012
KspAI	GTTAAC	1 cut(s)	47
LguI	GCTCTTC	1 cut(s)	2062
LmnI	GCTCC	8 cut(s)	475, 554, 569, 669, 1181, 1446, 1457, 1505
MaeI	CTAG	2 cut(s)	709, 1338
MaeII	ACGT	5 cut(s)	1596, 2099, 2309, 2341, 2493
MaeIII	GTNAC	4 cut(s)	194, 864, 1311, 1929
MbiI	CCGCTC	1 cut(s)	2438
MboII	GAAGA	7 cut(s)	19, 437, 1044, 1341, 1389, 2049, 2247
MfeI	CAATTG	1 cut(s)	1474
MflI	RGATCY	6 cut(s)	352, 436, 636, 1589, 1867, 2606
MhlI	GDGCHC	3 cut(s)	1617, 2361, 2637
MlsI	TGGCCA	1 cut(s)	2447
MluNI	TGGCCA	1 cut(s)	2447
MlyI	GAGTC	6 cut(s)	33, 180, 235, 1814, 1926, 2526
MmeI	TCCRAC	6 cut(s)	453, 576, 1424, 2274, 2481, 2542
Mox20I	TGGCCA	1 cut(s)	2447
Mph1103I	ATGCAT	1 cut(s)	1256
MroI	TCCGGA	1 cut(s)	338
MroXI	GAANNNNTTC	2 cut(s)	703, 1345
MscI	TGGCCA	1 cut(s)	2447
MseI	TTAA	7 cut(s)	46, 442, 957, 970, 991, 1051, 1674
MslI	CAYNNNNRTG	2 cut(s)	1041, 1963
Msp20I	TGGCCA	1 cut(s)	2447
MspA1I	CMGCKG	4 cut(s)	152, 930, 1158, 2160
MspI	CCGG	5 cut(s)	339, 464, 1998, 2407, 2592
MspR9I	CCNGG	9 cut(s)	32, 322, 334, 465, 1164, 1261, 2019, 2408, 2642
MunI	CAATTG	1 cut(s)	1474
Mva1269I	GAATGC	3 cut(s)	209, 1442, 2324
MvaI	CCWGG	7 cut(s)	32, 322, 334, 1164, 1261, 2019, 2642
NciI	CCSGG	2 cut(s)	465, 2408
NcoI	CCATGG	2 cut(s)	1567, 1729
NdeI	CATATG	3 cut(s)	545, 1250, 2198
NlaIV	GGNNCC	9 cut(s)	312, 462, 477, 565, 585, 662, 1290, 1448, 1819
NmeAIII	GCCGAG	1 cut(s)	2377
NmuCI	GTSAC	2 cut(s)	1311, 1929
NsiI	ATGCAT	1 cut(s)	1256
NspI	RCATGY	4 cut(s)	143, 2036, 2174, 2570
NspV	TTCGAA	1 cut(s)	2414
PaeR7I	CTCGAG	1 cut(s)	391
PasI	CCCWGGG	1 cut(s)	1260
PciSI	GCTCTTC	1 cut(s)	2062
PctI	GAATGC	3 cut(s)	209, 1442, 2324
PdmI	GAANNNNTTC	2 cut(s)	703, 1345
PfeI	GAWTC	6 cut(s)	342, 722, 819, 1539, 1554, 1917
PflMI	CCANNNNNTGG	1 cut(s)	2215
PfoI	TCCNGGA	1 cut(s)	463
PleI	GAGTC	6 cut(s)	32, 180, 235, 1813, 1926, 2525
PpsI	GAGTC	6 cut(s)	32, 180, 235, 1813, 1926, 2525
Ppu21I	YACGTR	2 cut(s)	2310, 2494
PshBI	ATTAAT	1 cut(s)	957
PsiI	TTATAA	1 cut(s)	1041
Psp1406I	AACGTT	1 cut(s)	2341
Psp6I	CCWGG	7 cut(s)	30, 320, 332, 1162, 1259, 2017, 2640
PspFI	CCCAGC	3 cut(s)	1154, 1833, 2160
PspGI	CCWGG	7 cut(s)	30, 320, 332, 1162, 1259, 2017, 2640
PspN4I	GGNNCC	9 cut(s)	312, 462, 477, 565, 585, 662, 1290, 1448, 1819
PspPI	GGNCC	6 cut(s)	311, 336, 583, 660, 1289, 1818
PspXI	VCTCGAGB	1 cut(s)	391
PstI	CTGCAG	2 cut(s)	103, 1912
PstNI	CAGNNNCTG	2 cut(s)	171, 297
PsuI	RGATCY	6 cut(s)	352, 436, 636, 1589, 1867, 2606
PvuII	CAGCTG	4 cut(s)	152, 930, 1158, 2160
RsaI	GTAC	7 cut(s)	138, 163, 909, 1747, 2312, 2492, 2587
RsaNI	GTAC	7 cut(s)	137, 162, 908, 1746, 2311, 2491, 2586
RseI	CAYNNNNRTG	2 cut(s)	1041, 1963
SapI	GCTCTTC	1 cut(s)	2062
SaqAI	TTAA	7 cut(s)	46, 442, 957, 970, 991, 1051, 1674
Sau96I	GGNCC	6 cut(s)	311, 336, 583, 660, 1289, 1818
SchI	GAGTC	6 cut(s)	33, 180, 235, 1814, 1926, 2526
ScrFI	CCNGG	9 cut(s)	32, 322, 334, 465, 1164, 1261, 2019, 2408, 2642
SduI	GDGCHC	3 cut(s)	1617, 2361, 2637
SfcI	CTRYAG	6 cut(s)	99, 289, 520, 1710, 1880, 1908
Sfr274I	CTCGAG	1 cut(s)	391
SfuI	TTCGAA	1 cut(s)	2414
SinI	GGWCC	4 cut(s)	311, 336, 583, 1818
SlaI	CTCGAG	1 cut(s)	391
SmiMI	CAYNNNNRTG	2 cut(s)	1041, 1963
SmlI	CTYRAG	4 cut(s)	391, 777, 1175, 1372
SmoI	CTYRAG	4 cut(s)	391, 777, 1175, 1372
SnaBI	TACGTA	1 cut(s)	2310
SsiI	CCGC	8 cut(s)	255, 810, 855, 1523, 1899, 2336, 2438, 2551
SspMI	CTAG	2 cut(s)	709, 1338
StyD4I	CCNGG	9 cut(s)	30, 320, 332, 463, 1162, 1259, 2017, 2406, 2640
StyI	CCWWGG	4 cut(s)	265, 1567, 1729, 1921
TaaI	ACNGT	6 cut(s)	44, 161, 471, 730, 912, 1020
TaiI	ACGT	5 cut(s)	1599, 2102, 2312, 2344, 2496
TaqI	TCGA	9 cut(s)	5, 304, 392, 725, 1354, 1664, 1699, 1935, 2414
TatI	WGTACW	2 cut(s)	907, 2585
TauI	GCSGC	1 cut(s)	858
TfiI	GAWTC	6 cut(s)	342, 722, 819, 1539, 1554, 1917
Tru1I	TTAA	7 cut(s)	46, 442, 957, 970, 991, 1051, 1674
Tru9I	TTAA	7 cut(s)	46, 442, 957, 970, 991, 1051, 1674
TscAI	CASTG	6 cut(s)	383, 565, 1771, 1855, 1861, 2435
TseFI	GTSAC	2 cut(s)	1311, 1929
Tsp45I	GTSAC	2 cut(s)	1311, 1929
TspGWI	ACGGA	3 cut(s)	1492, 1798, 1802
TspRI	CASTG	6 cut(s)	383, 565, 1771, 1855, 1861, 2435
Van91I	CCANNNNNTGG	1 cut(s)	2215
VpaK11BI	GGWCC	4 cut(s)	311, 336, 583, 1818
VspI	ATTAAT	1 cut(s)	957
XagI	CCTNNNNNAGG	1 cut(s)	282
XapI	RAATTY	2 cut(s)	1064, 1646
XceI	RCATGY	4 cut(s)	143, 2036, 2174, 2570
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1607
XhoI	CTCGAG	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	1709
XmnI	GAANNNNTTC	2 cut(s)	703, 1345
XspI	CTAG	2 cut(s)	709, 1338
ZraI	GACGTC	1 cut(s)	1597
Zsp2I	ATGCAT	1 cut(s)	1256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.