Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010684

Physical Location & Seq

Genomic Coordinates Reverse (-)

57630728 .. 57636824

Gene Structure 6097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG419800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2532 bp

ATGGCTATGGCTGTGGCTCATCATCAGCACAGAGAGAGTAGCAGTGGTAGTAGTATAAACAAGCATCTTAATGATGCTGGAAAATATGTGCGCTACACTTCTGAGCAAGTGGAAGCTCTTGAACGTGTCTATGCCGAGTGTCCCAAGCCGAGTTCTTTGAGAAGGCAGCAATTGATCCGAGACTGCCCCATTCTTTCAAACATAGAGCCCAAGCAGATCAAAGTCTGGTTTCAGAACCGCAGATGTCGAGAAAAGCAGAGAAAAGAGTCTTCGAGGCTTCAGACTGTTAACAGGAAATTATCAGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGACTGCAGAAACAGGTGTCTCAGCTTGTTTGTGAGAATGGGTACATGCGCCAACAGCTGCATACTGTACCAGCTACTGATGCAAGCTGCGACTCTGTGGTTACAACTCCGCAGCATTCTCTCAGAGATGCTAATAATCCTGCTGGACTCCTCTCCATAGCGGAGGAGACATTGGCAGAGTTCCTTTCTAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCTATTTCACAAAGTTGCGGTGGAGTGGCAGCTCGAGCCTGTGGTCTCGTAAGTTTAGAGCCTACGAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTCCGGGACTGTCGGAGCCTTGAAGTTTTTACTATGTTTCCTGCTGGAAATGGAGGGACTATAGAACTCATATATACGCAGACATATGCTCCGACTACACTGGCTCCTGCAAGGGATTTTTGGACCCTACGATACACTACTACTTTAGACAATGGCAGTTTTGTGGTATGTGAGAGATCTCTTTCTGGTTCTGGTGCTGGCCCCAATGGAGCTTCTGCTGCCCAGTTTGTCAGAGCAGAAATGCTTCCTAGTGGTTATCTGATTCGACCGTGTGAGGGTGGAGGATCAATCATTCATATTGTTGACCACCTGAACCTTGAGGCTTGGAGTGTGCCAGAAGTGCTGCGACCGCTTTATGAATCGTCCAAAGTGGTAGCGCAAAAAAGGACTATTGCGGCATTGCGTTACATCAGGCAAATAGCTCAGGAGACCAGTGGTGAAGTTGTGTACAGTTTTGGCAGGCAGCCAGCTGTTCTGCGAACTTTTAGCCAAAGATTAATCAGAGGCTTTAATGATGCTGTCAATGGATTTAATGATGATGGCTGGTCTTTGATCAACTGTGATGGTGCTGAAGACATTATAATGGCCGTTAATTCAACCAAGAATTTGACTACTACGAATCCTGCTAATTCATTTGCTTTTCTCGGTGGTATTCTGTGTGCAAAGGCTTCCATGCTACTCCAAAATGTCCCCCCAGCTGTCCTGGTTCGTTTCTTGAGGGAGCATCGTTCAGAGTGGGCTGATTTCAATGTTGATGCCTATTCTGCTGCGTCTTTGAAATCTGGTTCATATGCATACCCAGGGATGAGGCCAACAAGGTTTACTGGGGGCCAAATCATCATGCCACTTGGTCACACCATTGAACATGAAGAGTTGCTAGAAGTTGTTCGTCTTGAAGGCCATTCTTTCTCTCAAGAAGAAGCATTTGCATCACGGGACATTCATCTCTTACAGATATGTAGTGGAGTTGATGAAAATGCTGTGGGAGCCTGTTCAGAGCTTGTTTTTGCTCCAATTGATGAGATGTTTCCAGACGATGCTCCGTTGCTTCCCTCTGGTTTCCGCATTATTCCTTTGGAATCAAAAACAAGTGATTCAAAAGACGCCATGGCTACTCATCGGACATTAGATTTGACGTCCAGTCTTGAAGTGGGCTCAACAACAAACCATAATGCTGGAGATTTGAATTCATTTCATAACGCTCGATCAGTATTAACGATTGCCTTCCAGTTTCCCTTCGAGAGTAGTCTACAGGATAATGTTGCATCCATGGCACGCCAATATGTACGAAATGTCATCTCATCAGTGCAGAGAGTTGCAATGGCTATATCTCCATCAGGATTGAGTCCGTCCGTGGGACCAAAATTATCTCCCAGCTCTCCAGAAGCACTAACACTGGCTAACTGGATCTGCCAGAGCTATAGTTATCATATAGGGGCGGAACTGCTGCAGCCTGATTCCTTGGGCGGTGACTCGATGTTGAAACATCTATGGCATCATCAAGATGCGATTTTGTGCTGTTCATTGAAGTCACTGCCGGTTTTCATCTTTGCTAACCAGGCAGGGCTTGACATGCTGGAGACAACTCTTGTTGCTCTTCAGGACATCTCATTAGATAAGATTTTTGATGAGTGTGGACGTAAGACATTGTGCGCCGACTTTGCTAAACTAATGCAGCAGGGATTTGCTTACTTGCCGGCTGGGATTTGCATGTCAACAATGGGGCGCCATATCTCATATGAACAGGCCATTGGATGGAAAGTTCTTTCTGGAGAAGATAACTCTGTCCATTGCCTTGCCTTCTCGTTTGTAAACTGGTCTTTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

843

Amino Acids

92.62

Weight (kDa)

6.02

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	28 - 86	3.4e-15	Homeodomain
START	PF01852	165 - 373	4.4e-48	START domain
MEKHLA	PF08670	699 - 842	1.7e-44	MEKHLA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60690
fragaria_vesca	FvH4_3g32190 FvH4_3g32190 FvH4_3g32190 FvH4_3g32190
malus_domestica	MD03G1118500.v1.1 MD11G1136800.v1.1
prunus_persica	Prupe.6G102300_v2.0.a1
pyrus_communis	pycom11g11330
rosa_chinensis	RchiOBHm_Chr5g0058801
rosa_laevigata	RLG00000035251
rosa_multiflora	Rmu_sc0005911.1_g000011 Rmu_sc0041020.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021600
rosa_rugosa	Rorug05G0319200
rosa_samantha	Rh5AG384000 Rh5BG395900 Rh5CG419800 Rh5DG411600
rosa_wichuraiana	Rw5G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1283
AatII	GACGTC	1 cut(s)	1841
AccB1I	GGYRCC	1 cut(s)	2427
AccB7I	CCANNNNNTGG	1 cut(s)	2457
AccI	GTMKAC	1 cut(s)	1951
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	9 cut(s)	238, 446, 497, 618, 1052, 1097, 1765, 2141, 2169
AclWI	GGATC	5 cut(s)	169, 602, 673, 994, 2117
AcoI	YGGCCR	1 cut(s)	1287
AcsI	RAATTY	2 cut(s)	1306, 1888
AcuI	CTGAAG	3 cut(s)	263, 1293, 2285
AcyI	GRCGYC	3 cut(s)	1806, 1838, 2428
AfaI	GTAC	4 cut(s)	380, 405, 1151, 1989
AfiI	CCNNNNNNNGG	4 cut(s)	526, 977, 2057, 2457
AflIII	ACRYGT	1 cut(s)	124
AhdI	GACNNNNNGTC	1 cut(s)	1842
AjnI	CCWGG	5 cut(s)	562, 574, 1404, 1501, 2259
AjuI	GAANNNNNNNTTGG	2 cut(s)	2436, 2468
AloI	GAACNNNNNNTCC	2 cut(s)	2448, 2480
Alw26I	GTCTC	6 cut(s)	174, 360, 497, 650, 1124, 2276
AlwI	GGATC	5 cut(s)	169, 602, 673, 994, 2117
AlwNI	CAGNNNCTG	2 cut(s)	413, 539
Ama87I	CYCGRG	1 cut(s)	633
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	6 cut(s)	901, 1287, 1511, 1531, 1600, 2448
ApoI	RAATTY	2 cut(s)	1306, 1888
ArsI	GACNNNNNNTTYG	2 cut(s)	1816, 1848
AseI	ATTAAT	1 cut(s)	1199
Asp700I	GAANNNNTTC	2 cut(s)	945, 1587
AspLEI	GCGC	5 cut(s)	93, 387, 1081, 2357, 2430
AspS9I	GGNCC	6 cut(s)	553, 578, 825, 902, 1531, 2060
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	2 cut(s)	1151, 2183
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	4 cut(s)	553, 578, 825, 2060
BanI	GGYRCC	1 cut(s)	2427
BanII	GRGCYC	2 cut(s)	210, 1859
BbsI	GAAGAC	2 cut(s)	261, 1281
BccI	CCATC	6 cut(s)	316, 703, 1235, 1259, 2044, 2451
BceAI	ACGGC	1 cut(s)	1274
BciT130I	CCWGG	5 cut(s)	564, 576, 1406, 1503, 2261
BclI	TGATCA	1 cut(s)	1254
BcnI	CCSGG	1 cut(s)	707
BcoDI	GTCTC	6 cut(s)	174, 360, 497, 650, 1124, 2276
BfaI	CTAG	2 cut(s)	951, 1580
BfmI	CTRYAG	6 cut(s)	341, 531, 762, 1952, 2122, 2150
BfoI	RGCGCY	1 cut(s)	2431
BglII	AGATCT	1 cut(s)	878
Bme1390I	CCNGG	6 cut(s)	564, 576, 707, 1406, 1503, 2261
Bme18I	GGWCC	4 cut(s)	553, 578, 825, 2060
BmeRI	GACNNNNNGTC	1 cut(s)	1842
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	6 cut(s)	553, 578, 825, 902, 1531, 2060
BmrFI	CCNGG	6 cut(s)	564, 576, 707, 1406, 1503, 2261
BmrI	ACTGGG	2 cut(s)	919, 1536
BmuI	ACTGGG	2 cut(s)	919, 1536
BpiI	GAAGAC	2 cut(s)	261, 1281
BpmI	CTGGAG	4 cut(s)	1899, 2067, 2300, 2493
Bpu10I	CCTNAGC	1 cut(s)	1125
BpuEI	CTTGAG	3 cut(s)	1040, 1438, 1599
BpuMI	CCSGG	1 cut(s)	707
BsaHI	GRCGYC	3 cut(s)	1806, 1838, 2428
BsaI	GGTCTC	2 cut(s)	650, 1124
BsaJI	CCNNGG	7 cut(s)	563, 1501, 1502, 1809, 1971, 2055, 2163
BsaWI	WCCGGW	1 cut(s)	580
BsaXI	ACNNNNNCTCC	4 cut(s)	775, 790, 805, 820
Bsc4I	CCNNNNNNNGG	4 cut(s)	526, 977, 2057, 2457
Bse118I	RCCGGY	2 cut(s)	2239, 2398
Bse1I	ACTGG	9 cut(s)	807, 925, 1134, 1531, 1842, 1930, 2103, 2111, 2522
Bse3DI	GCAATG	4 cut(s)	312, 1100, 2028, 2491
BseAI	TCCGGA	1 cut(s)	580
BseBI	CCWGG	5 cut(s)	564, 576, 1406, 1503, 2261
BseDI	CCNNGG	7 cut(s)	563, 1501, 1502, 1809, 1971, 2055, 2163
BseGI	GGATG	4 cut(s)	573, 1512, 1967, 2462
BseLI	CCNNNNNNNGG	4 cut(s)	526, 977, 2057, 2457
BseMI	GCAATG	4 cut(s)	312, 1100, 2028, 2491
BseMII	CTCAG	4 cut(s)	93, 371, 472, 1139
BseNI	ACTGG	9 cut(s)	807, 925, 1134, 1531, 1842, 1930, 2103, 2111, 2522
BseRI	GAGGAG	2 cut(s)	476, 515
BseYI	CCCAGC	3 cut(s)	1396, 2075, 2402
BsgI	GTGCAG	1 cut(s)	2030
Bsh1285I	CGRYCG	2 cut(s)	971, 1052
BshFI	GGCC	6 cut(s)	903, 1289, 1513, 1533, 1602, 2450
BshNI	GGYRCC	1 cut(s)	2427
BsiEI	CGRYCG	2 cut(s)	971, 1052
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	4 cut(s)	581, 706, 2240, 2399
BslFI	GGGAC	6 cut(s)	126, 722, 772, 1376, 1652, 2073
BslI	CCNNNNNNNGG	4 cut(s)	526, 977, 2057, 2457
BsmAI	GTCTC	6 cut(s)	174, 360, 497, 650, 1124, 2276
BsmFI	GGGAC	6 cut(s)	126, 722, 772, 1376, 1652, 2073
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	6 cut(s)	903, 1289, 1513, 1533, 1602, 2450
Bso31I	GGTCTC	2 cut(s)	650, 1124
BsoBI	CYCGRG	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	210, 1859
Bsp13I	TCCGGA	1 cut(s)	580
Bsp1407I	TGTACA	1 cut(s)	1149
Bsp19I	CCATGG	2 cut(s)	1809, 1971
BspACI	CCGC	9 cut(s)	238, 446, 497, 618, 1052, 1097, 1765, 2141, 2169
BspANI	GGCC	6 cut(s)	903, 1289, 1513, 1533, 1602, 2450
BspCNI	CTCAG	4 cut(s)	94, 370, 471, 1138
BspEI	TCCGGA	1 cut(s)	580
BspMAI	CTGCAG	2 cut(s)	345, 2154
BspPI	GGATC	5 cut(s)	169, 602, 673, 994, 2117
BspQI	GCTCTTC	1 cut(s)	2304
BspT107I	GGYRCC	1 cut(s)	2427
BspTNI	GGTCTC	2 cut(s)	650, 1124
BsrDI	GCAATG	4 cut(s)	312, 1100, 2028, 2491
BsrFI	RCCGGY	2 cut(s)	2239, 2398
BsrGI	TGTACA	1 cut(s)	1149
BsrI	ACTGG	9 cut(s)	807, 925, 1134, 1531, 1842, 1930, 2103, 2111, 2522
BssAI	RCCGGY	2 cut(s)	2239, 2398
BssECI	CCNNGG	7 cut(s)	563, 1501, 1502, 1809, 1971, 2055, 2163
BssNI	GRCGYC	3 cut(s)	1806, 1838, 2428
BssT1I	CCWWGG	3 cut(s)	1809, 1971, 2163
Bst2UI	CCWGG	5 cut(s)	564, 576, 1406, 1503, 2261
Bst4CI	ACNGT	6 cut(s)	286, 403, 713, 972, 1154, 1262
Bst6I	CTCTTC	2 cut(s)	1566, 2304
BstACI	GRCGYC	3 cut(s)	1806, 1838, 2428
BstAUI	TGTACA	1 cut(s)	1149
BstC8I	GCNNGC	6 cut(s)	421, 901, 1163, 1170, 1978, 2400
BstDEI	CTNAG	5 cut(s)	102, 357, 458, 525, 1125
BstDSI	CCRYGG	3 cut(s)	1809, 1971, 2055
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	4 cut(s)	573, 1512, 1967, 2462
BstH2I	RGCGCY	1 cut(s)	2431
BstHHI	GCGC	5 cut(s)	93, 387, 1081, 2357, 2430
BstMAI	GTCTC	6 cut(s)	174, 360, 497, 650, 1124, 2276
BstMCI	CGRYCG	2 cut(s)	971, 1052
BstNI	CCWGG	5 cut(s)	564, 576, 1406, 1503, 2261
BstNSI	RCATGY	3 cut(s)	385, 2278, 2416
BstSCI	CCNGG	6 cut(s)	562, 574, 705, 1404, 1501, 2259
BstSFI	CTRYAG	6 cut(s)	341, 531, 762, 1952, 2122, 2150
BstV2I	GAAGAC	2 cut(s)	261, 1281
BstX2I	RGATCY	4 cut(s)	594, 678, 878, 2109
BstXI	CCANNNNNNTGG	2 cut(s)	563, 1877
BstYI	RGATCY	4 cut(s)	594, 678, 878, 2109
BsuRI	GGCC	6 cut(s)	903, 1289, 1513, 1533, 1602, 2450
BtgI	CCRYGG	3 cut(s)	1809, 1971, 2055
BtsCI	GGATG	4 cut(s)	573, 1512, 1967, 2462
BtsI	GCAGTG	2 cut(s)	49, 2234
BtsIMutI	CAGTG	6 cut(s)	49, 800, 1141, 2013, 2096, 2234
Cac8I	GCNNGC	6 cut(s)	421, 901, 1163, 1170, 1978, 2400
CaiI	CAGNNNCTG	2 cut(s)	413, 539
CfoI	GCGC	5 cut(s)	93, 387, 1081, 2357, 2430
Cfr10I	RCCGGY	2 cut(s)	2239, 2398
Cfr13I	GGNCC	6 cut(s)	553, 578, 825, 902, 1531, 2060
CseI	GACGC	2 cut(s)	1461, 1814
Csp6I	GTAC	4 cut(s)	379, 404, 1150, 1988
CviAII	CATG	8 cut(s)	382, 1375, 1543, 1568, 1810, 1972, 2275, 2413
CviQI	GTAC	4 cut(s)	379, 404, 1150, 1988
DdeI	CTNAG	5 cut(s)	102, 357, 458, 525, 1125
DinI	GGCGCC	1 cut(s)	2429
DriI	GACNNNNNGTC	1 cut(s)	1842
EaeI	YGGCCR	1 cut(s)	1287
Eam1104I	CTCTTC	2 cut(s)	1566, 2304
Eam1105I	GACNNNNNGTC	1 cut(s)	1842
EarI	CTCTTC	2 cut(s)	1566, 2304
EciI	GGCGGA	1 cut(s)	2156
Eco130I	CCWWGG	3 cut(s)	1809, 1971, 2163
Eco24I	GRGCYC	2 cut(s)	210, 1859
Eco31I	GGTCTC	2 cut(s)	650, 1124
Eco47I	GGWCC	4 cut(s)	553, 578, 825, 2060
Eco57I	CTGAAG	3 cut(s)	263, 1293, 2285
Eco88I	CYCGRG	1 cut(s)	633
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	1888
EcoRII	CCWGG	5 cut(s)	562, 574, 1404, 1501, 2259
EcoT14I	CCWWGG	3 cut(s)	1809, 1971, 2163
EcoT22I	ATGCAT	1 cut(s)	1498
EcoT38I	GRGCYC	2 cut(s)	210, 1859
EgeI	GGCGCC	1 cut(s)	2429
EheI	GGCGCC	1 cut(s)	2429
ErhI	CCWWGG	3 cut(s)	1809, 1971, 2163
FaeI	CATG	8 cut(s)	385, 1378, 1546, 1571, 1813, 1975, 2278, 2416
FaqI	GGGAC	6 cut(s)	126, 722, 772, 1376, 1652, 2073
FatI	CATG	8 cut(s)	381, 1374, 1542, 1567, 1809, 1971, 2274, 2412
FauNDI	CATATG	3 cut(s)	787, 1492, 2440
FbaI	TGATCA	1 cut(s)	1254
FblI	GTMKAC	1 cut(s)	1951
FokI	GGATG	4 cut(s)	580, 1519, 1954, 2469
FriOI	GRGCYC	2 cut(s)	210, 1859
FspBI	CTAG	2 cut(s)	951, 1580
GlaI	GCGC	5 cut(s)	92, 386, 1080, 2356, 2429
GsaI	CCCAGC	3 cut(s)	1400, 2079, 2406
GsuI	CTGGAG	4 cut(s)	1899, 2067, 2300, 2493
HaeII	RGCGCY	1 cut(s)	2431
HaeIII	GGCC	6 cut(s)	903, 1289, 1513, 1533, 1602, 2450
HapII	CCGG	4 cut(s)	581, 706, 2240, 2399
HgaI	GACGC	2 cut(s)	1461, 1814
HhaI	GCGC	5 cut(s)	93, 387, 1081, 2357, 2430
Hin1I	GRCGYC	3 cut(s)	1806, 1838, 2428
Hin1II	CATG	8 cut(s)	385, 1378, 1546, 1571, 1813, 1975, 2278, 2416
Hin6I	GCGC	5 cut(s)	91, 385, 1079, 2355, 2428
HinP1I	GCGC	5 cut(s)	91, 385, 1079, 2355, 2428
HincII	GTYRAC	3 cut(s)	289, 1006, 2418
HindII	GTYRAC	3 cut(s)	289, 1006, 2418
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	4 cut(s)	581, 706, 2240, 2399
HphI	GGTGA	2 cut(s)	1151, 2183
Hpy166II	GTNNAC	8 cut(s)	289, 1006, 1150, 1524, 1952, 2339, 2418, 2515
Hpy8I	GTNNAC	8 cut(s)	289, 1006, 1150, 1524, 1952, 2339, 2418, 2515
HpyAV	CCTTC	5 cut(s)	156, 1592, 1936, 1948, 2512
HpyCH4III	ACNGT	6 cut(s)	286, 403, 713, 972, 1154, 1262
HpyCH4IV	ACGT	3 cut(s)	124, 1838, 2341
HpyF3I	CTNAG	5 cut(s)	102, 357, 458, 525, 1125
HpySE526I	ACGT	3 cut(s)	124, 1838, 2341
Hsp92I	GRCGYC	3 cut(s)	1806, 1838, 2428
Hsp92II	CATG	8 cut(s)	385, 1378, 1546, 1571, 1813, 1975, 2278, 2416
HspAI	GCGC	5 cut(s)	91, 385, 1079, 2355, 2428
KasI	GGCGCC	1 cut(s)	2427
Kpn2I	TCCGGA	1 cut(s)	580
KroI	GCCGGC	1 cut(s)	2398
KroNI	GCCGGC	1 cut(s)	2400
Ksp22I	TGATCA	1 cut(s)	1254
KspAI	GTTAAC	1 cut(s)	289
LguI	GCTCTTC	1 cut(s)	2304
LmnI	GCTCC	8 cut(s)	717, 796, 811, 911, 1423, 1688, 1717, 1747
MaeI	CTAG	2 cut(s)	951, 1580
MaeII	ACGT	3 cut(s)	124, 1838, 2341
MaeIII	GTNAC	5 cut(s)	436, 1106, 1553, 2171, 2232
MboII	GAAGA	7 cut(s)	261, 679, 1286, 1583, 1631, 2291, 2489
MfeI	CAATTG	2 cut(s)	170, 1716
MflI	RGATCY	4 cut(s)	594, 678, 878, 2109
MhlI	GDGCHC	2 cut(s)	210, 1859
MluCI	AATT	8 cut(s)	170, 296, 1294, 1306, 1330, 1716, 1888, 2066
Mly113I	GGCGCC	1 cut(s)	2428
MlyI	GAGTC	5 cut(s)	275, 422, 477, 2056, 2168
MmeI	TCCRAC	2 cut(s)	695, 818
Mph1103I	ATGCAT	1 cut(s)	1498
MroI	TCCGGA	1 cut(s)	580
MroNI	GCCGGC	1 cut(s)	2398
MroXI	GAANNNNTTC	2 cut(s)	945, 1587
MseI	TTAA	8 cut(s)	69, 288, 684, 1199, 1212, 1233, 1293, 1916
MslI	CAYNNNNRTG	3 cut(s)	69, 1283, 2205
MspA1I	CMGCKG	3 cut(s)	394, 1172, 1400
MspI	CCGG	4 cut(s)	581, 706, 2240, 2399
MspR9I	CCNGG	6 cut(s)	564, 576, 707, 1406, 1503, 2261
MunI	CAATTG	2 cut(s)	170, 1716
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	5 cut(s)	564, 576, 1406, 1503, 2261
NaeI	GCCGGC	1 cut(s)	2400
NarI	GGCGCC	1 cut(s)	2428
NciI	CCSGG	1 cut(s)	707
NcoI	CCATGG	2 cut(s)	1809, 1971
NdeI	CATATG	3 cut(s)	787, 1492, 2440
NgoMIV	GCCGGC	1 cut(s)	2398
NlaIII	CATG	8 cut(s)	385, 1378, 1546, 1571, 1813, 1975, 2278, 2416
NmeAIII	GCCGAG	2 cut(s)	160, 174
NmuCI	GTSAC	3 cut(s)	1553, 2171, 2232
NsiI	ATGCAT	1 cut(s)	1498
NspI	RCATGY	3 cut(s)	385, 2278, 2416
PaeR7I	CTCGAG	1 cut(s)	633
PasI	CCCWGGG	1 cut(s)	1502
PciSI	GCTCTTC	1 cut(s)	2304
PctI	GAATGC	1 cut(s)	451
PdiI	GCCGGC	1 cut(s)	2400
PdmI	GAANNNNTTC	2 cut(s)	945, 1587
PfeI	GAWTC	7 cut(s)	584, 964, 1061, 1321, 1781, 1796, 2159
PflMI	CCANNNNNTGG	1 cut(s)	2457
PfoI	TCCNGGA	1 cut(s)	705
PleI	GAGTC	5 cut(s)	274, 422, 477, 2055, 2168
PluTI	GGCGCC	1 cut(s)	2431
PpsI	GAGTC	5 cut(s)	274, 422, 477, 2055, 2168
PshBI	ATTAAT	1 cut(s)	1199
PsiI	TTATAA	1 cut(s)	1283
Psp6I	CCWGG	5 cut(s)	562, 574, 1404, 1501, 2259
PspFI	CCCAGC	3 cut(s)	1396, 2075, 2402
PspGI	CCWGG	5 cut(s)	562, 574, 1404, 1501, 2259
PspPI	GGNCC	6 cut(s)	553, 578, 825, 902, 1531, 2060
PspXI	VCTCGAGB	1 cut(s)	633
PstI	CTGCAG	2 cut(s)	345, 2154
PstNI	CAGNNNCTG	2 cut(s)	413, 539
PsuI	RGATCY	4 cut(s)	594, 678, 878, 2109
PvuII	CAGCTG	3 cut(s)	394, 1172, 1400
RsaI	GTAC	4 cut(s)	380, 405, 1151, 1989
RsaNI	GTAC	4 cut(s)	379, 404, 1150, 1988
RseI	CAYNNNNRTG	3 cut(s)	69, 1283, 2205
SapI	GCTCTTC	1 cut(s)	2304
SaqAI	TTAA	8 cut(s)	69, 288, 684, 1199, 1212, 1233, 1293, 1916
Sau96I	GGNCC	6 cut(s)	553, 578, 825, 902, 1531, 2060
SchI	GAGTC	5 cut(s)	275, 422, 477, 2056, 2168
ScrFI	CCNGG	6 cut(s)	564, 576, 707, 1406, 1503, 2261
SduI	GDGCHC	2 cut(s)	210, 1859
SfcI	CTRYAG	6 cut(s)	341, 531, 762, 1952, 2122, 2150
SfoI	GGCGCC	1 cut(s)	2429
Sfr274I	CTCGAG	1 cut(s)	633
SinI	GGWCC	4 cut(s)	553, 578, 825, 2060
SlaI	CTCGAG	1 cut(s)	633
SmiMI	CAYNNNNRTG	3 cut(s)	69, 1283, 2205
SmlI	CTYRAG	4 cut(s)	633, 1019, 1417, 1614
SmoI	CTYRAG	4 cut(s)	633, 1019, 1417, 1614
Sse9I	AATT	8 cut(s)	170, 296, 1294, 1306, 1330, 1716, 1888, 2066
SsiI	CCGC	9 cut(s)	238, 446, 497, 618, 1052, 1097, 1765, 2141, 2169
SspDI	GGCGCC	1 cut(s)	2427
SspMI	CTAG	2 cut(s)	951, 1580
StyD4I	CCNGG	6 cut(s)	562, 574, 705, 1404, 1501, 2259
StyI	CCWWGG	3 cut(s)	1809, 1971, 2163
TaaI	ACNGT	6 cut(s)	286, 403, 713, 972, 1154, 1262
TaiI	ACGT	3 cut(s)	127, 1841, 2344
TaqI	TCGA	8 cut(s)	247, 272, 546, 634, 967, 1906, 1941, 2177
TasI	AATT	8 cut(s)	170, 296, 1294, 1306, 1330, 1716, 1888, 2066
TatI	WGTACW	1 cut(s)	1149
TauI	GCSGC	1 cut(s)	1100
TfiI	GAWTC	7 cut(s)	584, 964, 1061, 1321, 1781, 1796, 2159
Tru1I	TTAA	8 cut(s)	69, 288, 684, 1199, 1212, 1233, 1293, 1916
Tru9I	TTAA	8 cut(s)	69, 288, 684, 1199, 1212, 1233, 1293, 1916
TscAI	CASTG	6 cut(s)	49, 807, 1141, 2013, 2103, 2241
TseFI	GTSAC	3 cut(s)	1553, 2171, 2232
Tsp45I	GTSAC	3 cut(s)	1553, 2171, 2232
TspGWI	ACGGA	3 cut(s)	1734, 2040, 2044
TspRI	CASTG	6 cut(s)	49, 807, 1141, 2013, 2103, 2241
Van91I	CCANNNNNTGG	1 cut(s)	2457
VpaK11BI	GGWCC	4 cut(s)	553, 578, 825, 2060
VspI	ATTAAT	1 cut(s)	1199
XagI	CCTNNNNNAGG	1 cut(s)	524
XapI	RAATTY	2 cut(s)	1306, 1888
XceI	RCATGY	3 cut(s)	385, 2278, 2416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1849
XhoI	CTCGAG	1 cut(s)	633
XmiI	GTMKAC	1 cut(s)	1951
XmnI	GAANNNNTTC	2 cut(s)	945, 1587
XspI	CTAG	2 cut(s)	951, 1580
ZraI	GACGTC	1 cut(s)	1839
Zsp2I	ATGCAT	1 cut(s)	1498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.