Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010684

Physical Location & Seq

Genomic Coordinates Reverse (-)

65356955 .. 65364117

Gene Structure 7163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG411600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2250 bp

ATGGCTATGGCTGTGGCTCATCATCAGCACAGAGAGAGTAGCAGTGGTAGTAGTATAAACAAGCATCTTAATGATTCTGGAAAATATGTGCGCTACACTTCTGAGCAAGTGGAAGCTCTTGAACGTGTCTATGCCGAGTGTCCCAAGCCGAGTTCTTTGAGAAGGCAGCAATTGATCCGAGACTGCCCCATTCTTTCAAACATAGAGCCCAAGCAGATCAAAGTCTGGTTTCAGAACCGCAGATGTCGAGAAAAGCAGAGAAAAGAGTCTTCGAGGCTTCAGACTGTTAACAGGAAATTATCAGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGATTGCAGAAACAGGTGTCTCAGCTTGTTTGTGAGAATGGGTACATGCGCCAACAGCTGCATACTGTACCAGCTACTGATGCAAGCTGCGACTCTGTGGTTACAACTCCTCAGCATTCTCTCAGAGATGCTAATAATCCTGCTGGACTCCTCTCCATAGCGGAGGAGACCTTGGCAGAGTTCCTTTCTAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCTATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTAAGTTTAGAGCCTACGAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTCCGGGACTGTCGGAGCCTTGAAGTTTTTACTATGTTTCCTGCTGGAAATGGAGGGACTATAGAACTCATATATACGCAGACATATGCTCCGACTACACTGGCTCCTGCAAGGGATTTTTGGACCCTACGATACACTACTACTTTAGACAATGGCAGTTTTGTGGTATGTGAGAGATCTCTTTCTGGTTCTGGTGCTGGCCCCAATGGAGCTTCTGCTGCCCAGTTTGTTAGAGCAGAAATGCTTCCTAGTGGTTATCTGATTCGACCGTGTGAGGGTGGAGGATCAATCATTCATATTGTTGACCACCTGAACCTTGAGGCTTGGAGTGTGCCAGAAGTGCTGCGACCGCTTTATGAATCGTCCAAAGTGGTAGCACAAAAAAGGACTATTGCGGCATTGCGTTACATCAGGCAAATAGCTCAGGAGACGAGTGGTGAAGTTGTGTACAGTTTTGGCAGGCAGCCAGCTGTTCTGCGAACTTTTAGCCAAAGATTAATCAGAGGCTTCAATGATGCTGTCAATGGATTTAATGATGATGGCTGGTCTTTGATCAACTGTGATGGTGCTGAAGACATTATAATGGCCGTTAATTCAACCAAGAATTTGACTACTACGAATCCTGCTAATTCATTTGCTTTTCTTGGTGGTATTCTGTGTGCAAAGGCTTCCATGCTACTCCAAAATGTCCCCCCAGCTGTCCTGGTTCGTTTCTTGAGGGAGCATCGTTCAGAGTGGGCTGATTTCAATGTTGATGCCTATTCTGCTGCGTCTTTGAAATCTGGTTCATATGCATACCCAGGGATGAGGCCAACAAGGTTTACTGGGGGCCAAATCATCATGCCACTTGGTCACACCATTGAACACGAAGAGTTGCTAGAAGTTGTTCGTCTTGAAGGCCATTCTTTCTCTCAAGAAGAAGCATTTGCATCACGGGACATTCATCTCTTACAGATATGTAGTGGAGTTGATGAGAATGCTGTGGGAGCCTGTTCGGAGCTTGTTTTTGCTCCAATTGATGAGATGTTTCCAGACGATGCTCCGTTGCTTCCCTCTGGTTTCCGCATTATTCCTTTGGAATCAAAAACAAGTGATTCAAATGACGCCATGGCTACTCATCGGACTTTAGATCTGACGTCCAGTCTTGAAGTGGGCTCAACAACAAACCATAATGCTGGAGATTTGAATTCATTTCATAACGCTCGATCGGTATTAACGATTGCCTTCCAGTTTCCCTTCGAGAATAGTCTACAGGATAATGTTGCATCCATGGCACGCCAATATGTACGAAATGTCATCTCATCAGTGCAGAGAGTTGCAATGGCTATATCTCCATCAGGATTGAGTCCGTCGGTGGGACCAAAATTATCTCCCAGCTCACCAGAAGCACTAACACTGGCTAACTGGATCTGCCAGAGCTATAGTTATCATATAGGGGCGGAACTGCTGCAGCCTGATTCCTTGGTTGGTGACTCAATGTTGAAACATCTATGGCATCATCAAGATGCGATTTTGTGCTGTTCATTGAAGGTACTAGTGCAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

749

Amino Acids

82.32

Weight (kDa)

6.15

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	28 - 86	2.5e-15	Homeodomain
START	PF01852	165 - 373	1.9e-48	START domain
MEKHLA	PF08670	699 - 744	2.6e-08	MEKHLA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60690
fragaria_vesca	FvH4_3g32190 FvH4_3g32190 FvH4_3g32190 FvH4_3g32190
malus_domestica	MD03G1118500.v1.1 MD11G1136800.v1.1
prunus_persica	Prupe.6G102300_v2.0.a1
pyrus_communis	pycom11g11330
rosa_chinensis	RchiOBHm_Chr5g0058801
rosa_laevigata	RLG00000035251
rosa_multiflora	Rmu_sc0005911.1_g000011 Rmu_sc0041020.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021600
rosa_rugosa	Rorug05G0319200
rosa_samantha	Rh5AG384000 Rh5BG395900 Rh5CG419800 Rh5DG411600
rosa_wichuraiana	Rw5G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1283
AatII	GACGTC	1 cut(s)	1841
AccI	GTMKAC	1 cut(s)	1951
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	6 cut(s)	238, 497, 1052, 1097, 1765, 2141
AclWI	GGATC	5 cut(s)	169, 602, 673, 994, 2117
AcoI	YGGCCR	1 cut(s)	1287
AcsI	RAATTY	2 cut(s)	1306, 1888
AcuI	CTGAAG	2 cut(s)	263, 1293
AcyI	GRCGYC	2 cut(s)	1806, 1838
AfaI	GTAC	5 cut(s)	380, 405, 1151, 1989, 2235
AfiI	CCNNNNNNNGG	3 cut(s)	526, 977, 2057
AflIII	ACRYGT	1 cut(s)	124
AhdI	GACNNNNNGTC	1 cut(s)	1842
AhlI	ACTAGT	1 cut(s)	2236
AjnI	CCWGG	4 cut(s)	562, 574, 1404, 1501
Alw26I	GTCTC	4 cut(s)	174, 360, 497, 1124
AlwI	GGATC	5 cut(s)	169, 602, 673, 994, 2117
AlwNI	CAGNNNCTG	2 cut(s)	413, 539
Ama87I	CYCGRG	1 cut(s)	633
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	5 cut(s)	901, 1287, 1511, 1531, 1600
ApoI	RAATTY	2 cut(s)	1306, 1888
AseI	ATTAAT	1 cut(s)	1199
Asp700I	GAANNNNTTC	2 cut(s)	945, 1587
AspLEI	GCGC	2 cut(s)	93, 387
AspS9I	GGNCC	6 cut(s)	553, 578, 825, 902, 1531, 2060
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	3 cut(s)	1151, 2073, 2183
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	4 cut(s)	553, 578, 825, 2060
BanII	GRGCYC	2 cut(s)	210, 1859
BbsI	GAAGAC	2 cut(s)	261, 1281
BbvCI	CCTCAGC	1 cut(s)	447
BccI	CCATC	5 cut(s)	316, 703, 1235, 1259, 2044
BceAI	ACGGC	1 cut(s)	1274
BciT130I	CCWGG	4 cut(s)	564, 576, 1406, 1503
BclI	TGATCA	1 cut(s)	1254
BcnI	CCSGG	1 cut(s)	707
BcoDI	GTCTC	4 cut(s)	174, 360, 497, 1124
BcuI	ACTAGT	1 cut(s)	2236
BfaI	CTAG	3 cut(s)	951, 1580, 2237
BfmI	CTRYAG	5 cut(s)	531, 762, 1952, 2122, 2150
BglII	AGATCT	2 cut(s)	878, 1831
Bme1390I	CCNGG	5 cut(s)	564, 576, 707, 1406, 1503
Bme18I	GGWCC	4 cut(s)	553, 578, 825, 2060
BmeRI	GACNNNNNGTC	1 cut(s)	1842
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	6 cut(s)	553, 578, 825, 902, 1531, 2060
BmiI	GGNNCC	9 cut(s)	554, 704, 719, 807, 827, 904, 1532, 1690, 2061
BmrFI	CCNGG	5 cut(s)	564, 576, 707, 1406, 1503
BmrI	ACTGGG	2 cut(s)	919, 1536
BmuI	ACTGGG	2 cut(s)	919, 1536
BpiI	GAAGAC	2 cut(s)	261, 1281
BpmI	CTGGAG	1 cut(s)	1899
Bpu10I	CCTNAGC	2 cut(s)	447, 1125
BpuEI	CTTGAG	3 cut(s)	1040, 1438, 1599
BpuMI	CCSGG	1 cut(s)	707
BsaHI	GRCGYC	2 cut(s)	1806, 1838
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	7 cut(s)	507, 563, 1501, 1502, 1809, 1971, 2163
BsaWI	WCCGGW	1 cut(s)	580
BsaXI	ACNNNNNCTCC	4 cut(s)	775, 790, 805, 820
Bsc4I	CCNNNNNNNGG	3 cut(s)	526, 977, 2057
Bse1I	ACTGG	7 cut(s)	807, 925, 1531, 1842, 1930, 2103, 2111
Bse3DI	GCAATG	3 cut(s)	312, 1100, 2028
BseAI	TCCGGA	1 cut(s)	580
BseBI	CCWGG	4 cut(s)	564, 576, 1406, 1503
BseDI	CCNNGG	7 cut(s)	507, 563, 1501, 1502, 1809, 1971, 2163
BseGI	GGATG	3 cut(s)	573, 1512, 1967
BseLI	CCNNNNNNNGG	3 cut(s)	526, 977, 2057
BseMI	GCAATG	3 cut(s)	312, 1100, 2028
BseMII	CTCAG	5 cut(s)	93, 371, 461, 472, 1139
BseNI	ACTGG	7 cut(s)	807, 925, 1531, 1842, 1930, 2103, 2111
BseRI	GAGGAG	3 cut(s)	435, 476, 515
BseYI	CCCAGC	2 cut(s)	1396, 2075
BsgI	GTGCAG	1 cut(s)	2030
Bsh1285I	CGRYCG	3 cut(s)	971, 1052, 1910
BshFI	GGCC	5 cut(s)	903, 1289, 1513, 1533, 1602
BsiEI	CGRYCG	3 cut(s)	971, 1052, 1910
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	2 cut(s)	581, 706
BslFI	GGGAC	6 cut(s)	126, 722, 772, 1376, 1652, 2073
BslI	CCNNNNNNNGG	3 cut(s)	526, 977, 2057
BsmAI	GTCTC	4 cut(s)	174, 360, 497, 1124
BsmBI	CGTCTC	1 cut(s)	1124
BsmFI	GGGAC	6 cut(s)	126, 722, 772, 1376, 1652, 2073
BsmI	GAATGC	2 cut(s)	451, 1684
BsnI	GGCC	5 cut(s)	903, 1289, 1513, 1533, 1602
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	210, 1859
Bsp13I	TCCGGA	1 cut(s)	580
Bsp1407I	TGTACA	1 cut(s)	1149
Bsp19I	CCATGG	2 cut(s)	1809, 1971
BspACI	CCGC	6 cut(s)	238, 497, 1052, 1097, 1765, 2141
BspANI	GGCC	5 cut(s)	903, 1289, 1513, 1533, 1602
BspCNI	CTCAG	5 cut(s)	94, 370, 460, 471, 1138
BspEI	TCCGGA	1 cut(s)	580
BspLI	GGNNCC	9 cut(s)	554, 704, 719, 807, 827, 904, 1532, 1690, 2061
BspMAI	CTGCAG	1 cut(s)	2154
BspPI	GGATC	5 cut(s)	169, 602, 673, 994, 2117
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	3 cut(s)	312, 1100, 2028
BsrGI	TGTACA	1 cut(s)	1149
BsrI	ACTGG	7 cut(s)	807, 925, 1531, 1842, 1930, 2103, 2111
BssECI	CCNNGG	7 cut(s)	507, 563, 1501, 1502, 1809, 1971, 2163
BssNI	GRCGYC	2 cut(s)	1806, 1838
BssT1I	CCWWGG	4 cut(s)	507, 1809, 1971, 2163
Bst2UI	CCWGG	4 cut(s)	564, 576, 1406, 1503
Bst4CI	ACNGT	7 cut(s)	286, 403, 713, 972, 1154, 1262, 2247
Bst6I	CTCTTC	1 cut(s)	1566
BstACI	GRCGYC	2 cut(s)	1806, 1838
BstAUI	TGTACA	1 cut(s)	1149
BstC8I	GCNNGC	5 cut(s)	421, 901, 1163, 1170, 1978
BstDEI	CTNAG	6 cut(s)	102, 357, 447, 458, 525, 1125
BstDSI	CCRYGG	2 cut(s)	1809, 1971
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	3 cut(s)	573, 1512, 1967
BstHHI	GCGC	2 cut(s)	93, 387
BstMAI	GTCTC	4 cut(s)	174, 360, 497, 1124
BstMCI	CGRYCG	3 cut(s)	971, 1052, 1910
BstMWI	GCNNNNNNNGC	9 cut(s)	391, 416, 635, 920, 1042, 1051, 1466, 1688, 1973
BstNI	CCWGG	4 cut(s)	564, 576, 1406, 1503
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	5 cut(s)	562, 574, 705, 1404, 1501
BstSFI	CTRYAG	5 cut(s)	531, 762, 1952, 2122, 2150
BstV2I	GAAGAC	2 cut(s)	261, 1281
BstX2I	RGATCY	5 cut(s)	594, 678, 878, 1831, 2109
BstXI	CCANNNNNNTGG	2 cut(s)	563, 1877
BstYI	RGATCY	5 cut(s)	594, 678, 878, 1831, 2109
BsuRI	GGCC	5 cut(s)	903, 1289, 1513, 1533, 1602
BtgI	CCRYGG	2 cut(s)	1809, 1971
BtsCI	GGATG	3 cut(s)	573, 1512, 1967
BtsI	GCAGTG	2 cut(s)	49, 625
BtsIMutI	CAGTG	5 cut(s)	49, 625, 800, 2013, 2096
Cac8I	GCNNGC	5 cut(s)	421, 901, 1163, 1170, 1978
CaiI	CAGNNNCTG	2 cut(s)	413, 539
CfoI	GCGC	2 cut(s)	93, 387
Cfr13I	GGNCC	6 cut(s)	553, 578, 825, 902, 1531, 2060
CseI	GACGC	2 cut(s)	1461, 1814
Csp6I	GTAC	5 cut(s)	379, 404, 1150, 1988, 2234
CviAII	CATG	5 cut(s)	382, 1375, 1543, 1810, 1972
CviQI	GTAC	5 cut(s)	379, 404, 1150, 1988, 2234
DdeI	CTNAG	6 cut(s)	102, 357, 447, 458, 525, 1125
DriI	GACNNNNNGTC	1 cut(s)	1842
EaeI	YGGCCR	1 cut(s)	1287
Eam1104I	CTCTTC	1 cut(s)	1566
Eam1105I	GACNNNNNGTC	1 cut(s)	1842
EarI	CTCTTC	1 cut(s)	1566
EciI	GGCGGA	1 cut(s)	2156
Eco130I	CCWWGG	4 cut(s)	507, 1809, 1971, 2163
Eco24I	GRGCYC	2 cut(s)	210, 1859
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	4 cut(s)	553, 578, 825, 2060
Eco57I	CTGAAG	2 cut(s)	263, 1293
Eco88I	CYCGRG	1 cut(s)	633
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	1888
EcoRII	CCWGG	4 cut(s)	562, 574, 1404, 1501
EcoT14I	CCWWGG	4 cut(s)	507, 1809, 1971, 2163
EcoT22I	ATGCAT	1 cut(s)	1498
EcoT38I	GRGCYC	2 cut(s)	210, 1859
ErhI	CCWWGG	4 cut(s)	507, 1809, 1971, 2163
Esp3I	CGTCTC	1 cut(s)	1124
FaeI	CATG	5 cut(s)	385, 1378, 1546, 1813, 1975
FaqI	GGGAC	6 cut(s)	126, 722, 772, 1376, 1652, 2073
FatI	CATG	5 cut(s)	381, 1374, 1542, 1809, 1971
FauNDI	CATATG	2 cut(s)	787, 1492
FbaI	TGATCA	1 cut(s)	1254
FblI	GTMKAC	1 cut(s)	1951
FokI	GGATG	3 cut(s)	580, 1519, 1954
FriOI	GRGCYC	2 cut(s)	210, 1859
FspBI	CTAG	3 cut(s)	951, 1580, 2237
GlaI	GCGC	2 cut(s)	92, 386
GsaI	CCCAGC	2 cut(s)	1400, 2079
GsuI	CTGGAG	1 cut(s)	1899
HaeIII	GGCC	5 cut(s)	903, 1289, 1513, 1533, 1602
HapII	CCGG	2 cut(s)	581, 706
HgaI	GACGC	2 cut(s)	1461, 1814
HhaI	GCGC	2 cut(s)	93, 387
Hin1I	GRCGYC	2 cut(s)	1806, 1838
Hin1II	CATG	5 cut(s)	385, 1378, 1546, 1813, 1975
Hin6I	GCGC	2 cut(s)	91, 385
HinP1I	GCGC	2 cut(s)	91, 385
HincII	GTYRAC	2 cut(s)	289, 1006
HindII	GTYRAC	2 cut(s)	289, 1006
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	581, 706
HphI	GGTGA	3 cut(s)	1151, 2073, 2183
Hpy166II	GTNNAC	5 cut(s)	289, 1006, 1150, 1524, 1952
Hpy8I	GTNNAC	5 cut(s)	289, 1006, 1150, 1524, 1952
Hpy99I	CGWCG	1 cut(s)	2056
HpyAV	CCTTC	5 cut(s)	156, 1592, 1936, 1948, 2224
HpyCH4III	ACNGT	7 cut(s)	286, 403, 713, 972, 1154, 1262, 2247
HpyCH4IV	ACGT	2 cut(s)	124, 1838
HpyF10VI	GCNNNNNNNGC	9 cut(s)	391, 416, 635, 920, 1042, 1051, 1466, 1688, 1973
HpyF3I	CTNAG	6 cut(s)	102, 357, 447, 458, 525, 1125
HpySE526I	ACGT	2 cut(s)	124, 1838
Hsp92I	GRCGYC	2 cut(s)	1806, 1838
Hsp92II	CATG	5 cut(s)	385, 1378, 1546, 1813, 1975
HspAI	GCGC	2 cut(s)	91, 385
Kpn2I	TCCGGA	1 cut(s)	580
Ksp22I	TGATCA	1 cut(s)	1254
KspAI	GTTAAC	1 cut(s)	289
LmnI	GCTCC	9 cut(s)	717, 796, 811, 911, 1423, 1688, 1699, 1717, 1747
MaeI	CTAG	3 cut(s)	951, 1580, 2237
MaeII	ACGT	2 cut(s)	124, 1838
MaeIII	GTNAC	4 cut(s)	436, 1106, 1553, 2171
MboII	GAAGA	5 cut(s)	261, 679, 1286, 1583, 1631
MfeI	CAATTG	2 cut(s)	170, 1716
MflI	RGATCY	5 cut(s)	594, 678, 878, 1831, 2109
MhlI	GDGCHC	2 cut(s)	210, 1859
MluCI	AATT	8 cut(s)	170, 296, 1294, 1306, 1330, 1716, 1888, 2066
MlyI	GAGTC	5 cut(s)	275, 422, 477, 2056, 2168
MmeI	TCCRAC	2 cut(s)	695, 818
Mph1103I	ATGCAT	1 cut(s)	1498
MroI	TCCGGA	1 cut(s)	580
MroXI	GAANNNNTTC	2 cut(s)	945, 1587
MseI	TTAA	7 cut(s)	69, 288, 684, 1199, 1233, 1293, 1916
MslI	CAYNNNNRTG	3 cut(s)	69, 1283, 2205
MspA1I	CMGCKG	3 cut(s)	394, 1172, 1400
MspI	CCGG	2 cut(s)	581, 706
MspR9I	CCNGG	5 cut(s)	564, 576, 707, 1406, 1503
MunI	CAATTG	2 cut(s)	170, 1716
Mva1269I	GAATGC	2 cut(s)	451, 1684
MvaI	CCWGG	4 cut(s)	564, 576, 1406, 1503
MwoI	GCNNNNNNNGC	9 cut(s)	391, 416, 635, 920, 1042, 1051, 1466, 1688, 1973
NciI	CCSGG	1 cut(s)	707
NcoI	CCATGG	2 cut(s)	1809, 1971
NdeI	CATATG	2 cut(s)	787, 1492
NlaIII	CATG	5 cut(s)	385, 1378, 1546, 1813, 1975
NlaIV	GGNNCC	9 cut(s)	554, 704, 719, 807, 827, 904, 1532, 1690, 2061
NmeAIII	GCCGAG	2 cut(s)	160, 174
NmuCI	GTSAC	2 cut(s)	1553, 2171
NsiI	ATGCAT	1 cut(s)	1498
NspI	RCATGY	1 cut(s)	385
PaeR7I	CTCGAG	1 cut(s)	633
PasI	CCCWGGG	1 cut(s)	1502
PcsI	WCGNNNNNNNCGW	1 cut(s)	1916
PctI	GAATGC	2 cut(s)	451, 1684
PdmI	GAANNNNTTC	2 cut(s)	945, 1587
PfeI	GAWTC	8 cut(s)	74, 584, 964, 1061, 1321, 1781, 1796, 2159
PfoI	TCCNGGA	1 cut(s)	705
Ple19I	CGATCG	1 cut(s)	1910
PleI	GAGTC	5 cut(s)	274, 422, 477, 2055, 2168
PpsI	GAGTC	5 cut(s)	274, 422, 477, 2055, 2168
PshBI	ATTAAT	1 cut(s)	1199
PsiI	TTATAA	1 cut(s)	1283
Psp6I	CCWGG	4 cut(s)	562, 574, 1404, 1501
PspFI	CCCAGC	2 cut(s)	1396, 2075
PspGI	CCWGG	4 cut(s)	562, 574, 1404, 1501
PspN4I	GGNNCC	9 cut(s)	554, 704, 719, 807, 827, 904, 1532, 1690, 2061
PspPI	GGNCC	6 cut(s)	553, 578, 825, 902, 1531, 2060
PspXI	VCTCGAGB	1 cut(s)	633
PstI	CTGCAG	1 cut(s)	2154
PstNI	CAGNNNCTG	2 cut(s)	413, 539
PsuI	RGATCY	5 cut(s)	594, 678, 878, 1831, 2109
PvuI	CGATCG	1 cut(s)	1910
PvuII	CAGCTG	3 cut(s)	394, 1172, 1400
RsaI	GTAC	5 cut(s)	380, 405, 1151, 1989, 2235
RsaNI	GTAC	5 cut(s)	379, 404, 1150, 1988, 2234
RseI	CAYNNNNRTG	3 cut(s)	69, 1283, 2205
SaqAI	TTAA	7 cut(s)	69, 288, 684, 1199, 1233, 1293, 1916
Sau96I	GGNCC	6 cut(s)	553, 578, 825, 902, 1531, 2060
SchI	GAGTC	5 cut(s)	275, 422, 477, 2056, 2168
ScrFI	CCNGG	5 cut(s)	564, 576, 707, 1406, 1503
SduI	GDGCHC	2 cut(s)	210, 1859
SfcI	CTRYAG	5 cut(s)	531, 762, 1952, 2122, 2150
Sfr274I	CTCGAG	1 cut(s)	633
SinI	GGWCC	4 cut(s)	553, 578, 825, 2060
SlaI	CTCGAG	1 cut(s)	633
SmiMI	CAYNNNNRTG	3 cut(s)	69, 1283, 2205
SmlI	CTYRAG	4 cut(s)	633, 1019, 1417, 1614
SmoI	CTYRAG	4 cut(s)	633, 1019, 1417, 1614
SpeI	ACTAGT	1 cut(s)	2236
Sse9I	AATT	8 cut(s)	170, 296, 1294, 1306, 1330, 1716, 1888, 2066
SsiI	CCGC	6 cut(s)	238, 497, 1052, 1097, 1765, 2141
SspMI	CTAG	3 cut(s)	951, 1580, 2237
StyD4I	CCNGG	5 cut(s)	562, 574, 705, 1404, 1501
StyI	CCWWGG	4 cut(s)	507, 1809, 1971, 2163
TaaI	ACNGT	7 cut(s)	286, 403, 713, 972, 1154, 1262, 2247
TaiI	ACGT	2 cut(s)	127, 1841
TaqI	TCGA	7 cut(s)	247, 272, 546, 634, 967, 1906, 1941
TasI	AATT	8 cut(s)	170, 296, 1294, 1306, 1330, 1716, 1888, 2066
TatI	WGTACW	1 cut(s)	1149
TauI	GCSGC	1 cut(s)	1100
TfiI	GAWTC	8 cut(s)	74, 584, 964, 1061, 1321, 1781, 1796, 2159
Tru1I	TTAA	7 cut(s)	69, 288, 684, 1199, 1233, 1293, 1916
Tru9I	TTAA	7 cut(s)	69, 288, 684, 1199, 1233, 1293, 1916
TscAI	CASTG	5 cut(s)	49, 625, 807, 2013, 2103
TseFI	GTSAC	2 cut(s)	1553, 2171
Tsp45I	GTSAC	2 cut(s)	1553, 2171
TspGWI	ACGGA	2 cut(s)	1734, 2040
TspRI	CASTG	5 cut(s)	49, 625, 807, 2013, 2103
VpaK11BI	GGWCC	4 cut(s)	553, 578, 825, 2060
VspI	ATTAAT	1 cut(s)	1199
XagI	CCTNNNNNAGG	1 cut(s)	524
XapI	RAATTY	2 cut(s)	1306, 1888
XceI	RCATGY	1 cut(s)	385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1849
XhoI	CTCGAG	1 cut(s)	633
XmiI	GTMKAC	1 cut(s)	1951
XmnI	GAANNNNTTC	2 cut(s)	945, 1587
XspI	CTAG	3 cut(s)	951, 1580, 2237
ZraI	GACGTC	1 cut(s)	1839
Zsp2I	ATGCAT	1 cut(s)	1498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.