Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010684

Physical Location & Seq

Genomic Coordinates Reverse (-)

66296394 .. 66303959

Gene Structure 7566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG384000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1821 bp

ATGGCTATGGCTGTGGCTCATCATCAGCACAGAGAGAGTAGCAGTGGTAGTAGTATAAACAAGCATCTTAATGATTCTGGAAAATATGTGCGCTACACTTCTGAGCAAGTGGAAGCTCTTGAACGTGTCTATGCCGAGTGTCCCAAGCCGAGTTCTTTGAGAAGGCAGCAATTGATCCGAGACTGCCCCATTCTTTCAAACATAGAGCCCAAGCAGATCAAAGTCTGGTTTCAGAACCGCAGATGTCGAGAAAAGCAGAGAAAAGAGTCTTCGAGGCTTCAGACTGTTAACAGGAAATTATCAGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGACTGCAGAAACAGGTGTCTCAGCTTGTTTGTGAGAATGGGTACATGCGCCAACAGCTGCATACTGTACCAGCTACTGATGCAAGCTGCGACTCTGTGGTTACAACTCCTCAGCATTCTCTCAGAGATGCTAATAATCCTGCTGGACTCCTCTCCATAGCGGAGGAGACCTTGGCAGAGTTCCTTTCTAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCTATTTCACAAAGTTGCAGTGGAGTGGCAGCGCGAGCCTGTGGTCTCGTTAGTTTAGAGCCTACGAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTCCGGGACTGTCGGAGCCTTGAAGTTTTTACTATGTTTCCTGCTGGAAATGGAGGGACTATAGAACTCATATATACGCAGACATATGCTCCGACTACACTGGCTCCTGCAAGGGATTTTTGGACCCTACGATACACTACTACTTTAGACAATGGCAGTTTTGTGGTATGTGAGAGATCTCTTTCTGGTTCTGGTGCTGGCCCCAATGGAGCTTCTGCTGCCCAGTTTGTTAGAGCAGAAATGCTTCCTAGTGGTTATCTGATTCGACCGTGTGAGGGTGGAGGATCAATCATTCATATTGTTGACCACCTGAACCTTGAGGCTTGGAGTGTGCCAGAAGTGCTGCGACCGCTTTATGAATCGTCCAAAGTGGTAGCACAAAAAAGGACTATTGCGGCATTGCGTTACATCAGGCAAATAGCTCAGGAGACGAGTGGTGAAGTTGTGTACAGTTTTGGCAGGCAGCCAGCTGTTCTGCGAACTTTTAGCCAAAGATTAATCAGAGGCTTCAATGATGCTGTCAATGGATTTAATGATGATGGCTGGTCTTTGATCAACTGTGATGGTGCTGAAGACATTATAATGGCCGTTAATTCAACCAAGAATTTGACTACTACGAATCCTGCTAATTCATTTGCTTTTCTTGGTGGTATTCTGTGTGCAAAGGCTTCCATGCTACTCCAAAATGTCCCCCCAGCTGTCCTGGTTCGTTTCTTGAGGGAGCATCGTTCAGAGTGGGCTGATTTCAATGTTGATGCCTATTCTGCTGCGTCTTTGAAATCTGGTTCATATGCATACCCAGGGATGAGGCCAACAAGGTTTACTGGGGGCCAAATCATCATGCCACTTGGTCACACCATTGAACACGAAGAGTTGCTAGAAGTTGTTCGTCTTGAAGGCCATTCTTTCTCTCAAGAAGAAGCATTTGCATCACGGGACATTCATCTCTTACAGATATGTAGTGGAGTTGATGAGAATGCTGTGGGAGCCTGTTCGGAGCTTGTTTTTGCTCCAATTGATGAGATGTTTCCAGACGATGCTCCGTTGCTTCCCTCTGGTTTCCGCATTATTCCTTTGGAATCAAAAACAGTTGAGTTTTTTGTGCTTCTCACGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

606

Amino Acids

66.88

Weight (kDa)

6.16

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	28 - 86	1.9e-15	Homeodomain
START	PF01852	165 - 373	1.3e-48	START domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60690
fragaria_vesca	FvH4_3g32190 FvH4_3g32190 FvH4_3g32190 FvH4_3g32190
malus_domestica	MD03G1118500.v1.1 MD11G1136800.v1.1
prunus_persica	Prupe.6G102300_v2.0.a1
pyrus_communis	pycom11g11330
rosa_chinensis	RchiOBHm_Chr5g0058801
rosa_laevigata	RLG00000035251
rosa_multiflora	Rmu_sc0005911.1_g000011 Rmu_sc0041020.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021600
rosa_rugosa	Rorug05G0319200
rosa_samantha	Rh5AG384000 Rh5BG395900 Rh5CG419800 Rh5DG411600
rosa_wichuraiana	Rw5G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1283
AccII	CGCG	1 cut(s)	634
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	5 cut(s)	238, 497, 1052, 1097, 1765
AclWI	GGATC	4 cut(s)	169, 602, 673, 994
AcoI	YGGCCR	1 cut(s)	1287
AcsI	RAATTY	1 cut(s)	1306
AcuI	CTGAAG	2 cut(s)	263, 1293
AfaI	GTAC	3 cut(s)	380, 405, 1151
AfiI	CCNNNNNNNGG	2 cut(s)	526, 977
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	9 cut(s)	122, 198, 725, 1213, 1299, 1450, 1480, 1565, 1598
AjnI	CCWGG	4 cut(s)	562, 574, 1404, 1501
Alw26I	GTCTC	5 cut(s)	174, 360, 497, 650, 1124
AlwI	GGATC	4 cut(s)	169, 602, 673, 994
AlwNI	CAGNNNCTG	2 cut(s)	413, 539
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	5 cut(s)	901, 1287, 1511, 1531, 1600
ApeKI	GCWGC	8 cut(s)	166, 394, 423, 629, 920, 1045, 1165, 1469
ApoI	RAATTY	1 cut(s)	1306
AseI	ATTAAT	1 cut(s)	1199
Asp700I	GAANNNNTTC	2 cut(s)	945, 1587
AspLEI	GCGC	3 cut(s)	93, 387, 634
AspS9I	GGNCC	5 cut(s)	553, 578, 825, 902, 1531
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	1 cut(s)	1151
AvaII	GGWCC	3 cut(s)	553, 578, 825
BanII	GRGCYC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	1813
BbsI	GAAGAC	2 cut(s)	261, 1281
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	8 cut(s)	178, 381, 410, 641, 907, 1032, 1177, 1456
BccI	CCATC	4 cut(s)	316, 703, 1235, 1259
BceAI	ACGGC	1 cut(s)	1274
BciT130I	CCWGG	4 cut(s)	564, 576, 1406, 1503
BclI	TGATCA	1 cut(s)	1254
BcnI	CCSGG	1 cut(s)	707
BcoDI	GTCTC	5 cut(s)	174, 360, 497, 650, 1124
BfaI	CTAG	2 cut(s)	951, 1580
BfmI	CTRYAG	3 cut(s)	341, 531, 762
BglII	AGATCT	1 cut(s)	878
BisI	GCNGC	9 cut(s)	167, 395, 424, 630, 921, 1046, 1098, 1166, 1470
BlsI	GCNGC	9 cut(s)	168, 396, 425, 631, 922, 1047, 1099, 1167, 1471
Bme1390I	CCNGG	5 cut(s)	564, 576, 707, 1406, 1503
Bme18I	GGWCC	3 cut(s)	553, 578, 825
BmgT120I	GGNCC	5 cut(s)	553, 578, 825, 902, 1531
BmiI	GGNNCC	8 cut(s)	554, 704, 719, 807, 827, 904, 1532, 1690
BmrFI	CCNGG	5 cut(s)	564, 576, 707, 1406, 1503
BmrI	ACTGGG	2 cut(s)	919, 1536
BmsI	GCATC	9 cut(s)	73, 406, 454, 549, 1207, 1435, 1447, 1640, 1729
BmuI	ACTGGG	2 cut(s)	919, 1536
BpiI	GAAGAC	2 cut(s)	261, 1281
Bpu10I	CCTNAGC	2 cut(s)	447, 1125
BpuEI	CTTGAG	3 cut(s)	1040, 1438, 1599
BpuMI	CCSGG	1 cut(s)	707
BsaI	GGTCTC	2 cut(s)	497, 650
BsaJI	CCNNGG	4 cut(s)	507, 563, 1501, 1502
BsaWI	WCCGGW	1 cut(s)	580
BsaXI	ACNNNNNCTCC	4 cut(s)	775, 790, 805, 820
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 977
Bse1I	ACTGG	3 cut(s)	807, 925, 1531
Bse3DI	GCAATG	2 cut(s)	312, 1100
BseAI	TCCGGA	1 cut(s)	580
BseBI	CCWGG	4 cut(s)	564, 576, 1406, 1503
BseDI	CCNNGG	4 cut(s)	507, 563, 1501, 1502
BseGI	GGATG	2 cut(s)	573, 1512
BseLI	CCNNNNNNNGG	2 cut(s)	526, 977
BseMI	GCAATG	2 cut(s)	312, 1100
BseMII	CTCAG	5 cut(s)	93, 371, 461, 472, 1139
BseNI	ACTGG	3 cut(s)	807, 925, 1531
BseRI	GAGGAG	3 cut(s)	435, 476, 515
BseXI	GCAGC	8 cut(s)	178, 381, 410, 641, 907, 1032, 1177, 1456
BseYI	CCCAGC	1 cut(s)	1396
Bsh1236I	CGCG	1 cut(s)	634
Bsh1285I	CGRYCG	2 cut(s)	971, 1052
BshFI	GGCC	5 cut(s)	903, 1289, 1513, 1533, 1602
BsiEI	CGRYCG	2 cut(s)	971, 1052
BsiSI	CCGG	2 cut(s)	581, 706
BslFI	GGGAC	5 cut(s)	126, 722, 772, 1376, 1652
BslI	CCNNNNNNNGG	2 cut(s)	526, 977
BsmAI	GTCTC	5 cut(s)	174, 360, 497, 650, 1124
BsmBI	CGTCTC	1 cut(s)	1124
BsmFI	GGGAC	5 cut(s)	126, 722, 772, 1376, 1652
BsmI	GAATGC	2 cut(s)	451, 1684
BsnI	GGCC	5 cut(s)	903, 1289, 1513, 1533, 1602
Bso31I	GGTCTC	2 cut(s)	497, 650
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp13I	TCCGGA	1 cut(s)	580
Bsp1407I	TGTACA	1 cut(s)	1149
Bsp143I	GATC	8 cut(s)	174, 216, 594, 678, 688, 878, 986, 1254
BspACI	CCGC	5 cut(s)	238, 497, 1052, 1097, 1765
BspANI	GGCC	5 cut(s)	903, 1289, 1513, 1533, 1602
BspCNI	CTCAG	5 cut(s)	94, 370, 460, 471, 1138
BspEI	TCCGGA	1 cut(s)	580
BspFNI	CGCG	1 cut(s)	634
BspLI	GGNNCC	8 cut(s)	554, 704, 719, 807, 827, 904, 1532, 1690
BspMAI	CTGCAG	1 cut(s)	345
BspPI	GGATC	4 cut(s)	169, 602, 673, 994
BspTNI	GGTCTC	2 cut(s)	497, 650
BsrDI	GCAATG	2 cut(s)	312, 1100
BsrGI	TGTACA	1 cut(s)	1149
BsrI	ACTGG	3 cut(s)	807, 925, 1531
BssECI	CCNNGG	4 cut(s)	507, 563, 1501, 1502
BssMI	GATC	8 cut(s)	174, 216, 594, 678, 688, 878, 986, 1254
BssSI	CACGAG	1 cut(s)	1813
BssT1I	CCWWGG	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	1813
Bst2UI	CCWGG	4 cut(s)	564, 576, 1406, 1503
Bst4CI	ACNGT	7 cut(s)	286, 403, 713, 972, 1154, 1262, 1792
Bst6I	CTCTTC	1 cut(s)	1566
BstAUI	TGTACA	1 cut(s)	1149
BstC8I	GCNNGC	5 cut(s)	421, 636, 901, 1163, 1170
BstDEI	CTNAG	6 cut(s)	102, 357, 447, 458, 525, 1125
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	2 cut(s)	573, 1512
BstFNI	CGCG	1 cut(s)	634
BstHHI	GCGC	3 cut(s)	93, 387, 634
BstKTI	GATC	8 cut(s)	177, 219, 597, 681, 691, 881, 989, 1257
BstMAI	GTCTC	5 cut(s)	174, 360, 497, 650, 1124
BstMBI	GATC	8 cut(s)	174, 216, 594, 678, 688, 878, 986, 1254
BstMCI	CGRYCG	2 cut(s)	971, 1052
BstMWI	GCNNNNNNNGC	8 cut(s)	391, 416, 635, 920, 1042, 1051, 1466, 1688
BstNI	CCWGG	4 cut(s)	564, 576, 1406, 1503
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	5 cut(s)	562, 574, 705, 1404, 1501
BstSFI	CTRYAG	3 cut(s)	341, 531, 762
BstUI	CGCG	1 cut(s)	634
BstV1I	GCAGC	8 cut(s)	178, 381, 410, 641, 907, 1032, 1177, 1456
BstV2I	GAAGAC	2 cut(s)	261, 1281
BstX2I	RGATCY	3 cut(s)	594, 678, 878
BstXI	CCANNNNNNTGG	1 cut(s)	563
BstYI	RGATCY	3 cut(s)	594, 678, 878
BsuRI	GGCC	5 cut(s)	903, 1289, 1513, 1533, 1602
BtsCI	GGATG	2 cut(s)	573, 1512
BtsI	GCAGTG	2 cut(s)	49, 625
BtsIMutI	CAGTG	3 cut(s)	49, 625, 800
Cac8I	GCNNGC	5 cut(s)	421, 636, 901, 1163, 1170
CaiI	CAGNNNCTG	2 cut(s)	413, 539
CfoI	GCGC	3 cut(s)	93, 387, 634
Cfr13I	GGNCC	5 cut(s)	553, 578, 825, 902, 1531
CseI	GACGC	1 cut(s)	1461
Csp6I	GTAC	3 cut(s)	379, 404, 1150
CviAII	CATG	3 cut(s)	382, 1375, 1543
CviQI	GTAC	3 cut(s)	379, 404, 1150
DdeI	CTNAG	6 cut(s)	102, 357, 447, 458, 525, 1125
DpnI	GATC	8 cut(s)	176, 218, 596, 680, 690, 880, 988, 1256
DpnII	GATC	8 cut(s)	174, 216, 594, 678, 688, 878, 986, 1254
EaeI	YGGCCR	1 cut(s)	1287
Eam1104I	CTCTTC	1 cut(s)	1566
EarI	CTCTTC	1 cut(s)	1566
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	210
Eco31I	GGTCTC	2 cut(s)	497, 650
Eco47I	GGWCC	3 cut(s)	553, 578, 825
Eco57I	CTGAAG	2 cut(s)	263, 1293
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoRII	CCWGG	4 cut(s)	562, 574, 1404, 1501
EcoT14I	CCWWGG	1 cut(s)	507
EcoT22I	ATGCAT	1 cut(s)	1498
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	507
Esp3I	CGTCTC	1 cut(s)	1124
FaeI	CATG	3 cut(s)	385, 1378, 1546
FaqI	GGGAC	5 cut(s)	126, 722, 772, 1376, 1652
FatI	CATG	3 cut(s)	381, 1374, 1542
FauNDI	CATATG	2 cut(s)	787, 1492
FbaI	TGATCA	1 cut(s)	1254
Fnu4HI	GCNGC	9 cut(s)	167, 395, 424, 630, 921, 1046, 1098, 1166, 1470
FokI	GGATG	2 cut(s)	580, 1519
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	9 cut(s)	167, 395, 424, 630, 921, 1046, 1098, 1166, 1470
FspBI	CTAG	2 cut(s)	951, 1580
GlaI	GCGC	3 cut(s)	92, 386, 633
GluI	GCNGC	9 cut(s)	167, 395, 424, 630, 921, 1046, 1098, 1166, 1470
GsaI	CCCAGC	1 cut(s)	1400
HaeIII	GGCC	5 cut(s)	903, 1289, 1513, 1533, 1602
HapII	CCGG	2 cut(s)	581, 706
HgaI	GACGC	1 cut(s)	1461
HhaI	GCGC	3 cut(s)	93, 387, 634
Hin1II	CATG	3 cut(s)	385, 1378, 1546
Hin6I	GCGC	3 cut(s)	91, 385, 632
HinP1I	GCGC	3 cut(s)	91, 385, 632
HincII	GTYRAC	2 cut(s)	289, 1006
HindII	GTYRAC	2 cut(s)	289, 1006
HinfI	GANTC	9 cut(s)	74, 266, 428, 483, 584, 964, 1061, 1321, 1781
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	581, 706
HphI	GGTGA	1 cut(s)	1151
Hpy166II	GTNNAC	4 cut(s)	289, 1006, 1150, 1524
Hpy8I	GTNNAC	4 cut(s)	289, 1006, 1150, 1524
HpyAV	CCTTC	2 cut(s)	156, 1592
HpyCH4III	ACNGT	7 cut(s)	286, 403, 713, 972, 1154, 1262, 1792
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	9 cut(s)	343, 397, 419, 618, 674, 812, 1364, 1496, 1631
HpyF10VI	GCNNNNNNNGC	8 cut(s)	391, 416, 635, 920, 1042, 1051, 1466, 1688
HpyF3I	CTNAG	6 cut(s)	102, 357, 447, 458, 525, 1125
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	3 cut(s)	385, 1378, 1546
HspAI	GCGC	3 cut(s)	91, 385, 632
Kpn2I	TCCGGA	1 cut(s)	580
Ksp22I	TGATCA	1 cut(s)	1254
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	8 cut(s)	174, 216, 594, 678, 688, 878, 986, 1254
LmnI	GCTCC	9 cut(s)	717, 796, 811, 911, 1423, 1688, 1699, 1717, 1747
Lsp1109I	GCAGC	8 cut(s)	178, 381, 410, 641, 907, 1032, 1177, 1456
LweI	GCATC	9 cut(s)	73, 406, 454, 549, 1207, 1435, 1447, 1640, 1729
MaeI	CTAG	2 cut(s)	951, 1580
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	3 cut(s)	436, 1106, 1553
MalI	GATC	8 cut(s)	176, 218, 596, 680, 690, 880, 988, 1256
MboI	GATC	8 cut(s)	174, 216, 594, 678, 688, 878, 986, 1254
MboII	GAAGA	5 cut(s)	261, 679, 1286, 1583, 1631
MfeI	CAATTG	2 cut(s)	170, 1716
MflI	RGATCY	3 cut(s)	594, 678, 878
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	6 cut(s)	170, 296, 1294, 1306, 1330, 1716
MlyI	GAGTC	3 cut(s)	275, 422, 477
MmeI	TCCRAC	2 cut(s)	695, 818
Mph1103I	ATGCAT	1 cut(s)	1498
MroI	TCCGGA	1 cut(s)	580
MroXI	GAANNNNTTC	2 cut(s)	945, 1587
MseI	TTAA	6 cut(s)	69, 288, 684, 1199, 1233, 1293
MslI	CAYNNNNRTG	2 cut(s)	69, 1283
MspA1I	CMGCKG	3 cut(s)	394, 1172, 1400
MspI	CCGG	2 cut(s)	581, 706
MspR9I	CCNGG	5 cut(s)	564, 576, 707, 1406, 1503
MunI	CAATTG	2 cut(s)	170, 1716
Mva1269I	GAATGC	2 cut(s)	451, 1684
MvaI	CCWGG	4 cut(s)	564, 576, 1406, 1503
MvnI	CGCG	1 cut(s)	634
MwoI	GCNNNNNNNGC	8 cut(s)	391, 416, 635, 920, 1042, 1051, 1466, 1688
NciI	CCSGG	1 cut(s)	707
NdeI	CATATG	2 cut(s)	787, 1492
NdeII	GATC	8 cut(s)	174, 216, 594, 678, 688, 878, 986, 1254
NlaIII	CATG	3 cut(s)	385, 1378, 1546
NlaIV	GGNNCC	8 cut(s)	554, 704, 719, 807, 827, 904, 1532, 1690
NmeAIII	GCCGAG	2 cut(s)	160, 174
NmuCI	GTSAC	1 cut(s)	1553
NsiI	ATGCAT	1 cut(s)	1498
NspI	RCATGY	1 cut(s)	385
PasI	CCCWGGG	1 cut(s)	1502
PctI	GAATGC	2 cut(s)	451, 1684
PdmI	GAANNNNTTC	2 cut(s)	945, 1587
PfeI	GAWTC	6 cut(s)	74, 584, 964, 1061, 1321, 1781
PfoI	TCCNGGA	1 cut(s)	705
PkrI	GCNGC	9 cut(s)	168, 396, 425, 631, 922, 1047, 1099, 1167, 1471
PleI	GAGTC	3 cut(s)	274, 422, 477
PpsI	GAGTC	3 cut(s)	274, 422, 477
PshBI	ATTAAT	1 cut(s)	1199
PsiI	TTATAA	1 cut(s)	1283
Psp6I	CCWGG	4 cut(s)	562, 574, 1404, 1501
PspFI	CCCAGC	1 cut(s)	1396
PspGI	CCWGG	4 cut(s)	562, 574, 1404, 1501
PspN4I	GGNNCC	8 cut(s)	554, 704, 719, 807, 827, 904, 1532, 1690
PspPI	GGNCC	5 cut(s)	553, 578, 825, 902, 1531
PstI	CTGCAG	1 cut(s)	345
PstNI	CAGNNNCTG	2 cut(s)	413, 539
PsuI	RGATCY	3 cut(s)	594, 678, 878
PvuII	CAGCTG	3 cut(s)	394, 1172, 1400
RsaI	GTAC	3 cut(s)	380, 405, 1151
RsaNI	GTAC	3 cut(s)	379, 404, 1150
RseI	CAYNNNNRTG	2 cut(s)	69, 1283
SaqAI	TTAA	6 cut(s)	69, 288, 684, 1199, 1233, 1293
SatI	GCNGC	9 cut(s)	167, 395, 424, 630, 921, 1046, 1098, 1166, 1470
Sau3AI	GATC	8 cut(s)	174, 216, 594, 678, 688, 878, 986, 1254
Sau96I	GGNCC	5 cut(s)	553, 578, 825, 902, 1531
SchI	GAGTC	3 cut(s)	275, 422, 477
ScrFI	CCNGG	5 cut(s)	564, 576, 707, 1406, 1503
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	9 cut(s)	73, 406, 454, 549, 1207, 1435, 1447, 1640, 1729
SfcI	CTRYAG	3 cut(s)	341, 531, 762
SinI	GGWCC	3 cut(s)	553, 578, 825
SmiMI	CAYNNNNRTG	2 cut(s)	69, 1283
SmlI	CTYRAG	3 cut(s)	1019, 1417, 1614
SmoI	CTYRAG	3 cut(s)	1019, 1417, 1614
Sse9I	AATT	6 cut(s)	170, 296, 1294, 1306, 1330, 1716
SsiI	CCGC	5 cut(s)	238, 497, 1052, 1097, 1765
SspMI	CTAG	2 cut(s)	951, 1580
StyD4I	CCNGG	5 cut(s)	562, 574, 705, 1404, 1501
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	7 cut(s)	286, 403, 713, 972, 1154, 1262, 1792
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	4 cut(s)	247, 272, 546, 967
TasI	AATT	6 cut(s)	170, 296, 1294, 1306, 1330, 1716
TatI	WGTACW	1 cut(s)	1149
TauI	GCSGC	1 cut(s)	1100
TfiI	GAWTC	6 cut(s)	74, 584, 964, 1061, 1321, 1781
Tru1I	TTAA	6 cut(s)	69, 288, 684, 1199, 1233, 1293
Tru9I	TTAA	6 cut(s)	69, 288, 684, 1199, 1233, 1293
TscAI	CASTG	3 cut(s)	49, 625, 807
TseFI	GTSAC	1 cut(s)	1553
TseI	GCWGC	8 cut(s)	166, 394, 423, 629, 920, 1045, 1165, 1469
Tsp45I	GTSAC	1 cut(s)	1553
TspDTI	ATGAA	7 cut(s)	323, 584, 986, 1074, 1323, 1479, 1634
TspGWI	ACGGA	1 cut(s)	1734
TspRI	CASTG	3 cut(s)	49, 625, 807
VpaK11BI	GGWCC	3 cut(s)	553, 578, 825
VspI	ATTAAT	1 cut(s)	1199
XagI	CCTNNNNNAGG	1 cut(s)	524
XapI	RAATTY	1 cut(s)	1306
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	2 cut(s)	945, 1587
XspI	CTAG	2 cut(s)	951, 1580
Zsp2I	ATGCAT	1 cut(s)	1498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.