Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010684

Physical Location & Seq

Genomic Coordinates Forward (+)

26520556 .. 26528764

Gene Structure 8209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00021600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2679 bp

ATGGCTATGGCTGTGGCTCATCATCAGCACAGAGAGAGTAGCAGTGGTAGTAGTATAAACAAGCATCTTAATGATTCTGGAAAATATGTGCGCTACACTTCTGAGCAAGTGGAAGCTCTTGAACGTGTCTATGCCGAGTGTCCCAAGCCGAGTTCTTTGAGAAGGCAGCAATTGATCCGAGACTGCCCCATTCTTTCAAACATAGAGCCCAAGCAGATCAAAGTCTGGTTTCAGAACCGCAGATGTCGAGAAAAGCAGAGAAAAGAGTCTTCGAGGCTTCAGACTGTTAACAGGAAATTATCAGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGACTGCAGAAACAGGTGTCTCAGCTTGTTTGTGAGAATGGGTACATGCGCCAACAGCTGCATACTTCTTACTATACTTACACTATGGCCATGTTAAGACATAGTGTACCAGCTACTGATGCAAGCTGCGACTCTGTGGTTACAACTCCTCAGCATTCTCTCAGAGATGCTAGTAATCCTGCTGGACTCCTCTCCATAGCGGAGGAGACCTTGGCAGAGTTCCTTTCTAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCTATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTCGTAAGTTTAGAGCCTACGAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTCCGGGACTGTCGGAGCCTTGAAGTTTTTACTATGTTTCCTGCTGGAAATGGAGGGACTATAGAACTCATATATACGCAGACATATGCTCCGACTACACTGGCTCCTGCAAGGGATTTTTGGACCCTAAGATACACTACTACTTTAGACAATGGCAGTTTTGTGGTATGTGAGAGATCTCTTTCTGGTTCTGGTGCTGGCCCCAATGGAGCTTCTGCTGCCCAGTTTGTTAGAGCAGAAATGCTTCCTAGTGGTTATCTGATTCGACCGTGTGAGGGTGGAGGATCAATCATTCATATTGTTGACCACCTGAACCTTGAGGCTTGGAGTGTGCCAGAAGTGCTGCGACCGCTTTATGAATCATCCAAAGTGGTAGCACAAAAAAGGACTATTGCGGCATTGCGTTACATCAGGCAAATAGCTCAGGAAACGAGTGGTGAAGTTGTGTACAGTTTTGGCAGGCAGCCAGCTGTTCTGCGAACTTTTAGCCAAAGATTAATCAGAGGCTTTAATGATGCTGTCAATGGATTTAATGATGATGGCTGGTCATTGATCAACTGTGATGGTGCTGAAGACATTATAATGGCTGTTAATTCAACCAAGAATTTGACTACTACGAATCCTGCTAATTCCTTTGCTTTTCTTGGTGGTATTCTGTGTGCAAAGGCTTCCATGCTACTCCAAAATGTCCCCCCAGCTGTCCTGGTTCGTTTCTTGAGGGAGCATCGTTCAGAGTGGGCTGATTTCAATGTTGATGCCTATTCTGCTGCGTCTTTGAAATCTGGTTCATATGCATACCCAGGGATGAGGCCAACAAGGTTTACTGGGGGCCAAATCATCATGCCACTTGGTCACACCATTGAACACGAAGAGTTGCTAGAAGTTGTTCGTCTTGAAGGCCATTCTTTCTCTCAAGAAGAAGCATTTGCATCACGGGACATTCATCTCTTACAGATATGTAGTGGAGTTGATGAGAATGCTGTTGGAGCCTGTTCGGAGCTTGTTTTTGCTCCAATTGATGAGATGTTTCCAGACGATGCTCCGTTGCTTCCCTCTGGTTTCCGCATTATTCCTTTGGAATCAAAAACAAGTGATTCAAAAGACGCCATGGCTACTCATCGGACATTAGATTTGACGTCCAGTCTTGAAGTGGGCTCAACAACAAACCATAATGCTGGAGATTTGAATTCATTTCATAACGCTCGATCAGTATTAACGATTGCCTTCCAGTTTCCCTTCGAGAGTAGTCTACAGGATAATGTTGCATCCATGGCACGCCAATATGTACGAAATGTCATCTCATCAGTGCAGAGAGTTGCAATGGCTATATCTCCATCAGGATTGAGTCCTTATCATATAGGGGCAGAACTGCTGCAGCCTGATTCCTTGGGTGGTGACTCGATGTTGAAACATCTATGGCATCATCAAGATGCGATTTTGTGCTGTTCATTGAAGTCGCTGCCGGTTTTCATCTTTGCTAACCAGGCAGGGCTTGACATGCTGGAGACAACTCTTGTTGCTCTTCAGGACATCTCATTAGATAAGATTTTTGATGAGTGTGGACGTAAGACATTGTGCGCCGACTTTGCCAAACTAATGCAGCAGGGATTTGCTTACTTGCCAGCTGGGATTTGCATGTCAACAATGGGGCGCCATATCTCATATGAACAGGCCATTGGATGGAAAGTTCTTTCTGGAGAAGATAACTCTATCTTTTCAAGAATTTATGAGAGTCAGACTGCAAATATACGTACATGGAATGCTAAAGCCCTGTGGGTATTCCGGCAAGAAAATGTGGCAGCTGAGTTTTGCAGCGGAACGTTCACAGGCCGATTCCGGGGCACATCAAGAGAGTTTGGTGTGAGGGATGTTGTTGCAGATGAGAAAGTCAGGCTTCGAAATCGGAATTGTTGGCTCATCCGAAACTGTCCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

892

Amino Acids

98.81

Weight (kDa)

6.64

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	28 - 86	3.1e-15	Homeodomain
START	PF01852	178 - 386	2.6e-48	START domain
MEKHLA	PF08670	699 - 816	1.7e-33	MEKHLA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60690
fragaria_vesca	FvH4_3g32190 FvH4_3g32190 FvH4_3g32190 FvH4_3g32190
malus_domestica	MD03G1118500.v1.1 MD11G1136800.v1.1
prunus_persica	Prupe.6G102300_v2.0.a1
pyrus_communis	pycom11g11330
rosa_chinensis	RchiOBHm_Chr5g0058801
rosa_laevigata	RLG00000035251
rosa_multiflora	Rmu_sc0005911.1_g000011 Rmu_sc0041020.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021600
rosa_rugosa	Rorug05G0319200
rosa_samantha	Rh5AG384000 Rh5BG395900 Rh5CG419800 Rh5DG411600
rosa_wichuraiana	Rw5G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1322
AatII	GACGTC	1 cut(s)	1880
AccB1I	GGYRCC	1 cut(s)	2391
AccB7I	CCANNNNNTGG	1 cut(s)	2421
AccI	GTMKAC	1 cut(s)	1990
AccIII	TCCGGA	1 cut(s)	619
AciI	CCGC	6 cut(s)	238, 536, 1091, 1136, 1804, 2556
AclI	AACGTT	1 cut(s)	2561
AclWI	GGATC	4 cut(s)	169, 641, 712, 1033
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	3 cut(s)	1345, 1927, 2463
AcuI	CTGAAG	3 cut(s)	263, 1332, 2249
AcyI	GRCGYC	3 cut(s)	1845, 1877, 2392
AfaI	GTAC	5 cut(s)	380, 444, 1190, 2028, 2494
AfiI	CCNNNNNNNGG	4 cut(s)	565, 1016, 2421, 2578
AflIII	ACRYGT	1 cut(s)	124
AhdI	GACNNNNNGTC	1 cut(s)	1881
AjnI	CCWGG	5 cut(s)	601, 613, 1443, 1540, 2223
AjuI	GAANNNNNNNTTGG	2 cut(s)	2400, 2432
AloI	GAACNNNNNNTCC	2 cut(s)	2412, 2444
Alw26I	GTCTC	5 cut(s)	174, 360, 536, 689, 2240
AlwI	GGATC	4 cut(s)	169, 641, 712, 1033
AlwNI	CAGNNNCTG	2 cut(s)	452, 578
Ama87I	CYCGRG	1 cut(s)	672
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	7 cut(s)	423, 940, 1550, 1570, 1639, 2412, 2569
ApoI	RAATTY	3 cut(s)	1345, 1927, 2463
ArsI	GACNNNNNNTTYG	2 cut(s)	1855, 1887
AseI	ATTAAT	1 cut(s)	1238
Asp700I	GAANNNNTTC	2 cut(s)	984, 1626
AspLEI	GCGC	4 cut(s)	93, 387, 2321, 2394
AspS9I	GGNCC	5 cut(s)	592, 617, 864, 941, 1570
AsuC2I	CCSGG	2 cut(s)	746, 2579
AsuHPI	GGTGA	2 cut(s)	1190, 2147
AsuII	TTCGAA	1 cut(s)	2638
AvaI	CYCGRG	1 cut(s)	672
AvaII	GGWCC	3 cut(s)	592, 617, 864
BaeGI	GKGCMC	1 cut(s)	2585
BalI	TGGCCA	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	2391
BanII	GRGCYC	2 cut(s)	210, 1898
BbsI	GAAGAC	2 cut(s)	261, 1320
BbvCI	CCTCAGC	1 cut(s)	486
BccI	CCATC	6 cut(s)	316, 742, 1274, 1298, 2083, 2415
BciT130I	CCWGG	5 cut(s)	603, 615, 1445, 1542, 2225
BclI	TGATCA	1 cut(s)	1293
BcnI	CCSGG	2 cut(s)	746, 2579
BcoDI	GTCTC	5 cut(s)	174, 360, 536, 689, 2240
BfaI	CTAG	3 cut(s)	507, 990, 1619
BfmI	CTRYAG	5 cut(s)	341, 570, 801, 1991, 2114
BfoI	RGCGCY	1 cut(s)	2395
BglII	AGATCT	1 cut(s)	917
Bme1390I	CCNGG	7 cut(s)	603, 615, 746, 1445, 1542, 2225, 2579
Bme18I	GGWCC	3 cut(s)	592, 617, 864
BmeRI	GACNNNNNGTC	1 cut(s)	1881
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	5 cut(s)	592, 617, 864, 941, 1570
BmiI	GGNNCC	9 cut(s)	593, 743, 758, 846, 866, 943, 1571, 1729, 2393
BmrFI	CCNGG	7 cut(s)	603, 615, 746, 1445, 1542, 2225, 2579
BmrI	ACTGGG	2 cut(s)	958, 1575
BmuI	ACTGGG	2 cut(s)	958, 1575
BpiI	GAAGAC	2 cut(s)	261, 1320
BpmI	CTGGAG	3 cut(s)	1938, 2264, 2457
Bpu10I	CCTNAGC	2 cut(s)	486, 1164
Bpu14I	TTCGAA	1 cut(s)	2638
BpuEI	CTTGAG	3 cut(s)	1079, 1477, 1638
BpuMI	CCSGG	2 cut(s)	746, 2579
BsaAI	YACGTR	1 cut(s)	2492
BsaHI	GRCGYC	3 cut(s)	1845, 1877, 2392
BsaI	GGTCTC	2 cut(s)	536, 689
BsaJI	CCNNGG	8 cut(s)	546, 602, 1540, 1541, 1848, 2010, 2127, 2578
BsaWI	WCCGGW	1 cut(s)	619
BsaXI	ACNNNNNCTCC	4 cut(s)	814, 829, 844, 859
Bsc4I	CCNNNNNNNGG	4 cut(s)	565, 1016, 2421, 2578
Bse118I	RCCGGY	1 cut(s)	2203
Bse1I	ACTGG	5 cut(s)	846, 964, 1570, 1881, 1969
Bse3DI	GCAATG	3 cut(s)	312, 1139, 2067
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	5 cut(s)	603, 615, 1445, 1542, 2225
BseDI	CCNNGG	8 cut(s)	546, 602, 1540, 1541, 1848, 2010, 2127, 2578
BseGI	GGATG	7 cut(s)	612, 1103, 1551, 2006, 2426, 2614, 2658
BseLI	CCNNNNNNNGG	4 cut(s)	565, 1016, 2421, 2578
BseMI	GCAATG	3 cut(s)	312, 1139, 2067
BseMII	CTCAG	6 cut(s)	93, 371, 500, 511, 1178, 2535
BseNI	ACTGG	5 cut(s)	846, 964, 1570, 1881, 1969
BseRI	GAGGAG	3 cut(s)	474, 515, 554
BseSI	GKGCMC	1 cut(s)	2585
BseYI	CCCAGC	2 cut(s)	1435, 2366
BsgI	GTGCAG	1 cut(s)	2069
Bsh1285I	CGRYCG	2 cut(s)	1010, 1091
BshFI	GGCC	7 cut(s)	425, 942, 1552, 1572, 1641, 2414, 2571
BshNI	GGYRCC	1 cut(s)	2391
BsiEI	CGRYCG	2 cut(s)	1010, 1091
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	5 cut(s)	620, 745, 2204, 2524, 2578
BslFI	GGGAC	6 cut(s)	126, 761, 811, 1415, 1691, 2655
BslI	CCNNNNNNNGG	4 cut(s)	565, 1016, 2421, 2578
BsmAI	GTCTC	5 cut(s)	174, 360, 536, 689, 2240
BsmFI	GGGAC	6 cut(s)	126, 761, 811, 1415, 1691, 2655
BsmI	GAATGC	3 cut(s)	490, 1723, 2506
BsnI	GGCC	7 cut(s)	425, 942, 1552, 1572, 1641, 2414, 2571
Bso31I	GGTCTC	2 cut(s)	536, 689
BsoBI	CYCGRG	1 cut(s)	672
Bsp119I	TTCGAA	1 cut(s)	2638
Bsp1286I	GDGCHC	3 cut(s)	210, 1898, 2585
Bsp13I	TCCGGA	1 cut(s)	619
Bsp1407I	TGTACA	1 cut(s)	1188
Bsp143I	GATC	9 cut(s)	174, 216, 633, 717, 727, 917, 1025, 1293, 1946
Bsp19I	CCATGG	2 cut(s)	1848, 2010
BspACI	CCGC	6 cut(s)	238, 536, 1091, 1136, 1804, 2556
BspANI	GGCC	7 cut(s)	425, 942, 1552, 1572, 1641, 2414, 2571
BspCNI	CTCAG	6 cut(s)	94, 370, 499, 510, 1177, 2536
BspEI	TCCGGA	1 cut(s)	619
BspLI	GGNNCC	9 cut(s)	593, 743, 758, 846, 866, 943, 1571, 1729, 2393
BspMAI	CTGCAG	2 cut(s)	345, 2118
BspPI	GGATC	4 cut(s)	169, 641, 712, 1033
BspQI	GCTCTTC	1 cut(s)	2268
BspT104I	TTCGAA	1 cut(s)	2638
BspT107I	GGYRCC	1 cut(s)	2391
BspTNI	GGTCTC	2 cut(s)	536, 689
BsrDI	GCAATG	3 cut(s)	312, 1139, 2067
BsrFI	RCCGGY	1 cut(s)	2203
BsrGI	TGTACA	1 cut(s)	1188
BsrI	ACTGG	5 cut(s)	846, 964, 1570, 1881, 1969
BssAI	RCCGGY	1 cut(s)	2203
BssECI	CCNNGG	8 cut(s)	546, 602, 1540, 1541, 1848, 2010, 2127, 2578
BssMI	GATC	9 cut(s)	174, 216, 633, 717, 727, 917, 1025, 1293, 1946
BssNI	GRCGYC	3 cut(s)	1845, 1877, 2392
BssT1I	CCWWGG	4 cut(s)	546, 1848, 2010, 2127
Bst2UI	CCWGG	5 cut(s)	603, 615, 1445, 1542, 2225
Bst4CI	ACNGT	6 cut(s)	286, 752, 1011, 1193, 1301, 2669
Bst6I	CTCTTC	2 cut(s)	1605, 2268
BstACI	GRCGYC	3 cut(s)	1845, 1877, 2392
BstAUI	TGTACA	1 cut(s)	1188
BstBAI	YACGTR	1 cut(s)	2492
BstBI	TTCGAA	1 cut(s)	2638
BstC8I	GCNNGC	6 cut(s)	460, 940, 1202, 1209, 2017, 2364
BstDEI	CTNAG	8 cut(s)	102, 357, 486, 497, 564, 869, 1164, 2544
BstDSI	CCRYGG	2 cut(s)	1848, 2010
BstENI	CCTNNNNNAGG	1 cut(s)	563
BstF5I	GGATG	7 cut(s)	612, 1103, 1551, 2006, 2426, 2614, 2658
BstH2I	RGCGCY	1 cut(s)	2395
BstHHI	GCGC	4 cut(s)	93, 387, 2321, 2394
BstKTI	GATC	9 cut(s)	177, 219, 636, 720, 730, 920, 1028, 1296, 1949
BstMAI	GTCTC	5 cut(s)	174, 360, 536, 689, 2240
BstMBI	GATC	9 cut(s)	174, 216, 633, 717, 727, 917, 1025, 1293, 1946
BstMCI	CGRYCG	2 cut(s)	1010, 1091
BstNI	CCWGG	5 cut(s)	603, 615, 1445, 1542, 2225
BstNSI	RCATGY	3 cut(s)	385, 2242, 2380
BstSCI	CCNGG	7 cut(s)	601, 613, 744, 1443, 1540, 2223, 2577
BstSFI	CTRYAG	5 cut(s)	341, 570, 801, 1991, 2114
BstSLI	GKGCMC	1 cut(s)	2585
BstSNI	TACGTA	1 cut(s)	2492
BstV2I	GAAGAC	2 cut(s)	261, 1320
BstX2I	RGATCY	3 cut(s)	633, 717, 917
BstXI	CCANNNNNNTGG	2 cut(s)	602, 1916
BstYI	RGATCY	3 cut(s)	633, 717, 917
BsuRI	GGCC	7 cut(s)	425, 942, 1552, 1572, 1641, 2414, 2571
BtgI	CCRYGG	2 cut(s)	1848, 2010
BtsCI	GGATG	7 cut(s)	612, 1103, 1551, 2006, 2426, 2614, 2658
BtsI	GCAGTG	2 cut(s)	49, 664
BtsIMutI	CAGTG	4 cut(s)	49, 664, 839, 2052
Cac8I	GCNNGC	6 cut(s)	460, 940, 1202, 1209, 2017, 2364
CaiI	CAGNNNCTG	2 cut(s)	452, 578
CfoI	GCGC	4 cut(s)	93, 387, 2321, 2394
Cfr10I	RCCGGY	1 cut(s)	2203
Cfr13I	GGNCC	5 cut(s)	592, 617, 864, 941, 1570
CseI	GACGC	2 cut(s)	1500, 1853
Csp6I	GTAC	5 cut(s)	379, 443, 1189, 2027, 2493
CviAII	CATG	9 cut(s)	382, 427, 1414, 1582, 1849, 2011, 2239, 2377, 2496
CviQI	GTAC	5 cut(s)	379, 443, 1189, 2027, 2493
DdeI	CTNAG	8 cut(s)	102, 357, 486, 497, 564, 869, 1164, 2544
DinI	GGCGCC	1 cut(s)	2393
DpnI	GATC	9 cut(s)	176, 218, 635, 719, 729, 919, 1027, 1295, 1948
DpnII	GATC	9 cut(s)	174, 216, 633, 717, 727, 917, 1025, 1293, 1946
DriI	GACNNNNNGTC	1 cut(s)	1881
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	2 cut(s)	1605, 2268
Eam1105I	GACNNNNNGTC	1 cut(s)	1881
EarI	CTCTTC	2 cut(s)	1605, 2268
Eco105I	TACGTA	1 cut(s)	2492
Eco130I	CCWWGG	4 cut(s)	546, 1848, 2010, 2127
Eco24I	GRGCYC	2 cut(s)	210, 1898
Eco31I	GGTCTC	2 cut(s)	536, 689
Eco47I	GGWCC	3 cut(s)	592, 617, 864
Eco57I	CTGAAG	3 cut(s)	263, 1332, 2249
Eco88I	CYCGRG	1 cut(s)	672
EcoNI	CCTNNNNNAGG	1 cut(s)	563
EcoRI	GAATTC	1 cut(s)	1927
EcoRII	CCWGG	5 cut(s)	601, 613, 1443, 1540, 2223
EcoT14I	CCWWGG	4 cut(s)	546, 1848, 2010, 2127
EcoT22I	ATGCAT	1 cut(s)	1537
EcoT38I	GRGCYC	2 cut(s)	210, 1898
EgeI	GGCGCC	1 cut(s)	2393
EheI	GGCGCC	1 cut(s)	2393
ErhI	CCWWGG	4 cut(s)	546, 1848, 2010, 2127
FaeI	CATG	9 cut(s)	385, 430, 1417, 1585, 1852, 2014, 2242, 2380, 2499
FalI	AAGNNNNNCTT	2 cut(s)	2619, 2651
FaqI	GGGAC	6 cut(s)	126, 761, 811, 1415, 1691, 2655
FatI	CATG	9 cut(s)	381, 426, 1413, 1581, 1848, 2010, 2238, 2376, 2495
FauNDI	CATATG	3 cut(s)	826, 1531, 2404
FbaI	TGATCA	1 cut(s)	1293
FblI	GTMKAC	1 cut(s)	1990
FokI	GGATG	7 cut(s)	619, 1090, 1558, 1993, 2433, 2621, 2645
FriOI	GRGCYC	2 cut(s)	210, 1898
FspBI	CTAG	3 cut(s)	507, 990, 1619
GlaI	GCGC	4 cut(s)	92, 386, 2320, 2393
GsaI	CCCAGC	2 cut(s)	1439, 2370
GsuI	CTGGAG	3 cut(s)	1938, 2264, 2457
HaeII	RGCGCY	1 cut(s)	2395
HaeIII	GGCC	7 cut(s)	425, 942, 1552, 1572, 1641, 2414, 2571
HapII	CCGG	5 cut(s)	620, 745, 2204, 2524, 2578
HgaI	GACGC	2 cut(s)	1500, 1853
HhaI	GCGC	4 cut(s)	93, 387, 2321, 2394
Hin1I	GRCGYC	3 cut(s)	1845, 1877, 2392
Hin1II	CATG	9 cut(s)	385, 430, 1417, 1585, 1852, 2014, 2242, 2380, 2499
Hin6I	GCGC	4 cut(s)	91, 385, 2319, 2392
HinP1I	GCGC	4 cut(s)	91, 385, 2319, 2392
HincII	GTYRAC	3 cut(s)	289, 1045, 2382
HindII	GTYRAC	3 cut(s)	289, 1045, 2382
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	5 cut(s)	620, 745, 2204, 2524, 2578
HphI	GGTGA	2 cut(s)	1190, 2147
Hpy166II	GTNNAC	9 cut(s)	289, 443, 1045, 1189, 1563, 1991, 2303, 2382, 2565
Hpy8I	GTNNAC	9 cut(s)	289, 443, 1045, 1189, 1563, 1991, 2303, 2382, 2565
HpyAV	CCTTC	4 cut(s)	156, 1631, 1975, 1987
HpyCH4III	ACNGT	6 cut(s)	286, 752, 1011, 1193, 1301, 2669
HpyCH4IV	ACGT	5 cut(s)	124, 1877, 2305, 2491, 2561
HpyF3I	CTNAG	8 cut(s)	102, 357, 486, 497, 564, 869, 1164, 2544
HpySE526I	ACGT	5 cut(s)	124, 1877, 2305, 2491, 2561
Hsp92I	GRCGYC	3 cut(s)	1845, 1877, 2392
Hsp92II	CATG	9 cut(s)	385, 430, 1417, 1585, 1852, 2014, 2242, 2380, 2499
HspAI	GCGC	4 cut(s)	91, 385, 2319, 2392
KasI	GGCGCC	1 cut(s)	2391
Kpn2I	TCCGGA	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	1293
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	9 cut(s)	174, 216, 633, 717, 727, 917, 1025, 1293, 1946
LguI	GCTCTTC	1 cut(s)	2268
LmnI	GCTCC	9 cut(s)	756, 835, 850, 950, 1462, 1727, 1738, 1756, 1786
MaeI	CTAG	3 cut(s)	507, 990, 1619
MaeII	ACGT	5 cut(s)	124, 1877, 2305, 2491, 2561
MaeIII	GTNAC	4 cut(s)	475, 1145, 1592, 2135
MalI	GATC	9 cut(s)	176, 218, 635, 719, 729, 919, 1027, 1295, 1948
MboI	GATC	9 cut(s)	174, 216, 633, 717, 727, 917, 1025, 1293, 1946
MboII	GAAGA	7 cut(s)	261, 718, 1325, 1622, 1670, 2255, 2453
MfeI	CAATTG	2 cut(s)	170, 1755
MflI	RGATCY	3 cut(s)	633, 717, 917
MhlI	GDGCHC	3 cut(s)	210, 1898, 2585
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	9 cut(s)	170, 296, 1333, 1345, 1369, 1755, 1927, 2463, 2647
MluNI	TGGCCA	1 cut(s)	425
Mly113I	GGCGCC	1 cut(s)	2392
MlyI	GAGTC	6 cut(s)	275, 461, 516, 2095, 2132, 2482
MmeI	TCCRAC	3 cut(s)	734, 857, 1705
Mox20I	TGGCCA	1 cut(s)	425
Mph1103I	ATGCAT	1 cut(s)	1537
MroI	TCCGGA	1 cut(s)	619
MroXI	GAANNNNTTC	2 cut(s)	984, 1626
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	9 cut(s)	69, 288, 431, 723, 1238, 1251, 1272, 1332, 1955
MslI	CAYNNNNRTG	3 cut(s)	69, 1322, 2169
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	6 cut(s)	394, 1211, 1439, 2366, 2543, 2556
MspI	CCGG	5 cut(s)	620, 745, 2204, 2524, 2578
MspR9I	CCNGG	7 cut(s)	603, 615, 746, 1445, 1542, 2225, 2579
MunI	CAATTG	2 cut(s)	170, 1755
Mva1269I	GAATGC	3 cut(s)	490, 1723, 2506
MvaI	CCWGG	5 cut(s)	603, 615, 1445, 1542, 2225
NarI	GGCGCC	1 cut(s)	2392
NciI	CCSGG	2 cut(s)	746, 2579
NcoI	CCATGG	2 cut(s)	1848, 2010
NdeI	CATATG	3 cut(s)	826, 1531, 2404
NdeII	GATC	9 cut(s)	174, 216, 633, 717, 727, 917, 1025, 1293, 1946
NlaIII	CATG	9 cut(s)	385, 430, 1417, 1585, 1852, 2014, 2242, 2380, 2499
NlaIV	GGNNCC	9 cut(s)	593, 743, 758, 846, 866, 943, 1571, 1729, 2393
NmeAIII	GCCGAG	2 cut(s)	160, 174
NmuCI	GTSAC	2 cut(s)	1592, 2135
NsiI	ATGCAT	1 cut(s)	1537
NspI	RCATGY	3 cut(s)	385, 2242, 2380
NspV	TTCGAA	1 cut(s)	2638
PaeR7I	CTCGAG	1 cut(s)	672
PasI	CCCWGGG	1 cut(s)	1541
PciSI	GCTCTTC	1 cut(s)	2268
PctI	GAATGC	3 cut(s)	490, 1723, 2506
PdmI	GAANNNNTTC	2 cut(s)	984, 1626
PfeI	GAWTC	9 cut(s)	74, 623, 1003, 1100, 1360, 1820, 1835, 2123, 2574
PflMI	CCANNNNNTGG	1 cut(s)	2421
PfoI	TCCNGGA	1 cut(s)	744
PleI	GAGTC	6 cut(s)	274, 461, 516, 2094, 2132, 2481
PluTI	GGCGCC	1 cut(s)	2395
PpsI	GAGTC	6 cut(s)	274, 461, 516, 2094, 2132, 2481
Ppu21I	YACGTR	1 cut(s)	2492
PshBI	ATTAAT	1 cut(s)	1238
PsiI	TTATAA	1 cut(s)	1322
Psp1406I	AACGTT	1 cut(s)	2561
Psp6I	CCWGG	5 cut(s)	601, 613, 1443, 1540, 2223
PspFI	CCCAGC	2 cut(s)	1435, 2366
PspGI	CCWGG	5 cut(s)	601, 613, 1443, 1540, 2223
PspN4I	GGNNCC	9 cut(s)	593, 743, 758, 846, 866, 943, 1571, 1729, 2393
PspPI	GGNCC	5 cut(s)	592, 617, 864, 941, 1570
PspXI	VCTCGAGB	1 cut(s)	672
PstI	CTGCAG	2 cut(s)	345, 2118
PstNI	CAGNNNCTG	2 cut(s)	452, 578
PsuI	RGATCY	3 cut(s)	633, 717, 917
PvuII	CAGCTG	5 cut(s)	394, 1211, 1439, 2366, 2543
RsaI	GTAC	5 cut(s)	380, 444, 1190, 2028, 2494
RsaNI	GTAC	5 cut(s)	379, 443, 1189, 2027, 2493
RseI	CAYNNNNRTG	3 cut(s)	69, 1322, 2169
SapI	GCTCTTC	1 cut(s)	2268
SaqAI	TTAA	9 cut(s)	69, 288, 431, 723, 1238, 1251, 1272, 1332, 1955
Sau3AI	GATC	9 cut(s)	174, 216, 633, 717, 727, 917, 1025, 1293, 1946
Sau96I	GGNCC	5 cut(s)	592, 617, 864, 941, 1570
SchI	GAGTC	6 cut(s)	275, 461, 516, 2095, 2132, 2482
ScrFI	CCNGG	7 cut(s)	603, 615, 746, 1445, 1542, 2225, 2579
SduI	GDGCHC	3 cut(s)	210, 1898, 2585
SfcI	CTRYAG	5 cut(s)	341, 570, 801, 1991, 2114
SfoI	GGCGCC	1 cut(s)	2393
Sfr274I	CTCGAG	1 cut(s)	672
SfuI	TTCGAA	1 cut(s)	2638
SinI	GGWCC	3 cut(s)	592, 617, 864
SlaI	CTCGAG	1 cut(s)	672
SmiMI	CAYNNNNRTG	3 cut(s)	69, 1322, 2169
SmlI	CTYRAG	4 cut(s)	672, 1058, 1456, 1653
SmoI	CTYRAG	4 cut(s)	672, 1058, 1456, 1653
SnaBI	TACGTA	1 cut(s)	2492
Sse9I	AATT	9 cut(s)	170, 296, 1333, 1345, 1369, 1755, 1927, 2463, 2647
SsiI	CCGC	6 cut(s)	238, 536, 1091, 1136, 1804, 2556
SspDI	GGCGCC	1 cut(s)	2391
SspMI	CTAG	3 cut(s)	507, 990, 1619
StyD4I	CCNGG	7 cut(s)	601, 613, 744, 1443, 1540, 2223, 2577
StyI	CCWWGG	4 cut(s)	546, 1848, 2010, 2127
TaaI	ACNGT	6 cut(s)	286, 752, 1011, 1193, 1301, 2669
TaiI	ACGT	5 cut(s)	127, 1880, 2308, 2494, 2564
TaqI	TCGA	9 cut(s)	247, 272, 585, 673, 1006, 1945, 1980, 2141, 2638
TasI	AATT	9 cut(s)	170, 296, 1333, 1345, 1369, 1755, 1927, 2463, 2647
TatI	WGTACW	1 cut(s)	1188
TauI	GCSGC	1 cut(s)	1139
TfiI	GAWTC	9 cut(s)	74, 623, 1003, 1100, 1360, 1820, 1835, 2123, 2574
Tru1I	TTAA	9 cut(s)	69, 288, 431, 723, 1238, 1251, 1272, 1332, 1955
Tru9I	TTAA	9 cut(s)	69, 288, 431, 723, 1238, 1251, 1272, 1332, 1955
TscAI	CASTG	4 cut(s)	49, 664, 846, 2052
TseFI	GTSAC	2 cut(s)	1592, 2135
Tsp45I	GTSAC	2 cut(s)	1592, 2135
TspGWI	ACGGA	1 cut(s)	1773
TspRI	CASTG	4 cut(s)	49, 664, 846, 2052
Van91I	CCANNNNNTGG	1 cut(s)	2421
VpaK11BI	GGWCC	3 cut(s)	592, 617, 864
VspI	ATTAAT	1 cut(s)	1238
XagI	CCTNNNNNAGG	1 cut(s)	563
XapI	RAATTY	3 cut(s)	1345, 1927, 2463
XceI	RCATGY	3 cut(s)	385, 2242, 2380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1888
XhoI	CTCGAG	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	1990
XmnI	GAANNNNTTC	2 cut(s)	984, 1626
XspI	CTAG	3 cut(s)	507, 990, 1619
ZraI	GACGTC	1 cut(s)	1878
Zsp2I	ATGCAT	1 cut(s)	1537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.