MD03G1164800.v1.1

Amidohydrolase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
21717673 .. 21724235
6563 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1164800.v1.1.491

Sequence Viewer

Length: 1626 bp
ATGGCTTCCAGCTCCAGTCCTCAACGCATCTTCCCTCTGTTGTCTTTGATCCTCCTTCTCTTCTCCTTCTCTCCAATTTCCGAATCGAGCCACCAGTTCTGTGATGCTGGAATTGGACATGGTGCGTCGACCTGTGGGGTTTCTTCATCGTCGTCATCGTCTTCTACGAAGCTGTTGATCAAAGGCGGGATTGTGGTGAACGCTCATGAGATGGAGGCTGCTGATGTTTATGTGGAGGGTGGAATCATTGTTTCTGTTAGGCCTAATATTAAGGTTGGTGATGATGTTACTGTGCTTGATGCCACTGGAAAGTTTGTCATGCCAGGAGGCATTGATCCTCATACCCACCTAGGCATGGAATTCATGGGTACAGAAACTATTGATGATTTCTTCAGTGGTCAGGCGGCAGCATTAGCAGGTGGAACAACTATGCACATCGACTTTGTTTTACCAGTGAATGGAAGTTTATTGTCAGGGTTGGAAGCTTATGAAAAAAAATCTAGGGAGTCCTGCATGGATTATGGTTTCCATATGGCAATTACAAAATGGGATGAACATACTTCAAAAGAAATGGAAATAATGGTCAAGAAGAAAGGTATAAACTCTTTCAAGTTTTTCATGGCCTACAAGGGGTCCTTCATGGTCAATGATGAGCTTCTGCTAGAAGGATTCAAAAAATGTAAGTCTCTTGGTGCGTTAGCCATGGTGCATGCAGAAAATGGAGATGCTGTATATGAAGGACAGAGAAGAATGATAGAACTTGGGATTACTGGTCCAGAGGGACATGCTCTTTCAAGGCCCCCAGTGCTGGAAGGAGAGGCAACTGCTCGAGCAATTCGACTAGCAGGTTTTGTGAATACTCCCCTCTATGTAGTTCATGTGATGAGCATTGATGCTATGGAAGAAATTTCTAAAGCTCGCAAATCAGGGCAGAAGGTGATTGGCGAGACAGTACTTTCTGGGTTAGTGCTTAATGATTCTTGGCTTTGGGATCCTGACTTTATCACTGCTGCTAAGTATGTCATGAGTCCCCCTATAAGGGTAGCTGGACATGACAAAGCCCTTCAAGCTGCTCTTTCAATGGGAGTTCTGCAGCTTGTAGGAACGGATCATTGTACCTTCAATTCAACACAGAAAGCTCTTGGAATAGATGATTTCCGGAAAATTCCAAATGGTGTCAATGGTATTGAGGAGAGGATGCATCTTGTATGGAATACAATGGTGGAATCTGGTCAAATTTCTGTTACTGACTACGTCCGGTTGACGAGTACTGAATGTGCTAGGCTTTTCAATATATATCCTAGGAAGGGAGCAATTCGCGCAGGTTCTGATGCAGATATAATTATACTAAATCCAAACTCAAGCTTTGAGATACATGCAAAGTCCCACCACTCTAGAACAGATACCAATGTCTACGAGGGATGGAAAGGGAAGGGCAAGGTTGAAGTGACCATTTCTGGTGGAAGGGTTGTTTGGGAAAATGATGAATTGAAGGTTGTTCCTAGTTCTGGAAAGTACATAGAAATGCCGCCTTTCGGATATCTTTTTAATGGAATTGACAAGGCAGATGCTAAGTACCTATCTTCTATGAAAGCCCCTGTAAAGCGTTCTAGAGCAACTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

542

Amino Acids

58.75

Weight (kDa)

6.2

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidohydro_1 PF01979 105 - 491 5.5e-24 Amidohydrolase family
Amidohydro_3 PF07969 350 - 491 8.2e-08 Amidohydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 407
Acc36I ACCTGC 3 cut(s) 407, 836, 1313
AccB7I CCANNNNNTGG 1 cut(s) 458
AccI GTMKAC 2 cut(s) 128, 1413
AccII CGCG 1 cut(s) 1320
AccIII TCCGGA 1 cut(s) 1158
AciI CCGC 3 cut(s) 186, 404, 1529
AclWI GGATC 5 cut(s) 43, 329, 986, 999, 1116
AcsI RAATTY 4 cut(s) 359, 906, 1164, 1236
AcuI CTGAAG 1 cut(s) 376
AfaI GTAC 6 cut(s) 370, 954, 1117, 1270, 1517, 1577
AfiI CCNNNNNNNGG 9 cut(s) 355, 458, 630, 808, 1038, 1039, 1307, 1508, 1535
AjnI CCWGG 1 cut(s) 322
AjuI GAANNNNNNNTTGG 2 cut(s) 1456, 1488
Alw26I GTCTC 2 cut(s) 690, 941
AlwI GGATC 5 cut(s) 43, 329, 986, 999, 1116
AlwNI CAGNNNCTG 1 cut(s) 1328
Ama87I CYCGRG 1 cut(s) 828
Aor13HI TCCGGA 1 cut(s) 1158
AoxI GGCC 3 cut(s) 260, 621, 797
ApeKI GCWGC 5 cut(s) 218, 407, 1010, 1070, 1093
ApoI RAATTY 4 cut(s) 359, 906, 1164, 1236
AspA2I CCTAGG 2 cut(s) 349, 1301
AspLEI GCGC 1 cut(s) 1322
AspS9I GGNCC 3 cut(s) 633, 773, 798
AsuHPI GGTGA 3 cut(s) 208, 290, 949
AvaI CYCGRG 1 cut(s) 828
AvaII GGWCC 2 cut(s) 633, 773
AvrII CCTAGG 2 cut(s) 349, 1301
BaeI ACNNNNGTAYC 2 cut(s) 1395, 1428
BamHI GGATCC 1 cut(s) 991
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 5 cut(s) 205, 419, 997, 1057, 1105
BccI CCATC 2 cut(s) 205, 1416
BciT130I CCWGG 1 cut(s) 324
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 2 cut(s) 690, 941
BfaI CTAG 9 cut(s) 350, 501, 662, 842, 1281, 1302, 1395, 1503, 1611
BfmI CTRYAG 1 cut(s) 1091
BfuAI ACCTGC 3 cut(s) 407, 836, 1313
BisI GCNGC 7 cut(s) 219, 405, 408, 1011, 1071, 1094, 1529
BlnI CCTAGG 2 cut(s) 349, 1301
BlsI GCNGC 7 cut(s) 220, 406, 409, 1012, 1072, 1095, 1530
BmcAI AGTACT 2 cut(s) 954, 1270
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 2 cut(s) 633, 773
BmeT110I CYCGRG 1 cut(s) 828
BmgT120I GGNCC 3 cut(s) 633, 773, 798
BmiI GGNNCC 3 cut(s) 634, 800, 993
BmrFI CCNGG 1 cut(s) 324
BmrI ACTGGG 1 cut(s) 797
BmsI GCATC 9 cut(s) 36, 94, 289, 715, 883, 1188, 1210, 1321, 1558
BmuI ACTGGG 1 cut(s) 797
BpiI GAAGAC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 1345
BsaJI CCNNGG 3 cut(s) 349, 702, 1301
BsaWI WCCGGW 2 cut(s) 1158, 1257
BsaXI ACNNNNNCTCC 2 cut(s) 714, 744
Bsc4I CCNNNNNNNGG 9 cut(s) 355, 458, 630, 808, 1038, 1039, 1307, 1508, 1535
Bse1I ACTGG 6 cut(s) 15, 94, 310, 452, 775, 803
BseAI TCCGGA 1 cut(s) 1158
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 349, 702, 1301
BseGI GGATG 3 cut(s) 556, 1203, 1427
BseLI CCNNNNNNNGG 9 cut(s) 355, 458, 630, 808, 1038, 1039, 1307, 1508, 1535
BseNI ACTGG 6 cut(s) 15, 94, 310, 452, 775, 803
BseRI GAGGAG 1 cut(s) 1205
BseXI GCAGC 5 cut(s) 205, 419, 997, 1057, 1105
Bsh1236I CGCG 1 cut(s) 1320
BshFI GGCC 3 cut(s) 262, 623, 799
BsiHKCI CYCGRG 1 cut(s) 828
BsiSI CCGG 2 cut(s) 1159, 1258
BslFI GGGAC 3 cut(s) 795, 1014, 1369
BslI CCNNNNNNNGG 9 cut(s) 355, 458, 630, 808, 1038, 1039, 1307, 1508, 1535
BsmAI GTCTC 2 cut(s) 690, 941
BsmFI GGGAC 3 cut(s) 795, 1014, 1369
BsnI GGCC 3 cut(s) 262, 623, 799
BsoBI CYCGRG 1 cut(s) 828
Bsp13I TCCGGA 1 cut(s) 1158
Bsp143I GATC 5 cut(s) 48, 177, 334, 991, 1108
Bsp19I CCATGG 1 cut(s) 702
BspACI CCGC 3 cut(s) 186, 404, 1529
BspANI GGCC 3 cut(s) 262, 623, 799
BspEI TCCGGA 1 cut(s) 1158
BspFNI CGCG 1 cut(s) 1320
BspHI TCATGA 2 cut(s) 205, 1023
BspLI GGNNCC 3 cut(s) 634, 800, 993
BspMAI CTGCAG 1 cut(s) 1095
BspMI ACCTGC 3 cut(s) 407, 836, 1313
BspPI GGATC 5 cut(s) 43, 329, 986, 999, 1116
BsrI ACTGG 6 cut(s) 15, 94, 310, 452, 775, 803
BssECI CCNNGG 3 cut(s) 349, 702, 1301
BssMI GATC 5 cut(s) 48, 177, 334, 991, 1108
BssT1I CCWWGG 3 cut(s) 349, 702, 1301
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 3 cut(s) 292, 952, 1621
Bst6I CTCTTC 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 711, 919
BstDEI CTNAG 2 cut(s) 1014, 1572
BstDSI CCRYGG 1 cut(s) 702
BstF5I GGATG 3 cut(s) 556, 1203, 1427
BstFNI CGCG 1 cut(s) 1320
BstHHI GCGC 1 cut(s) 1322
BstKTI GATC 5 cut(s) 51, 180, 337, 994, 1111
BstMAI GTCTC 2 cut(s) 690, 941
BstMBI GATC 5 cut(s) 48, 177, 334, 991, 1108
BstMWI GCNNNNNNNGC 4 cut(s) 413, 805, 1067, 1319
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 3 cut(s) 713, 788, 1379
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 1091
BstUI CGCG 1 cut(s) 1320
BstV1I GCAGC 5 cut(s) 205, 419, 997, 1057, 1105
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 991
BstYI RGATCY 1 cut(s) 991
BsuRI GGCC 3 cut(s) 262, 623, 799
BtgI CCRYGG 1 cut(s) 702
BtsCI GGATG 3 cut(s) 556, 1203, 1427
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 5 cut(s) 303, 400, 459, 810, 1005
BveI ACCTGC 3 cut(s) 407, 836, 1313
Cac8I GCNNGC 2 cut(s) 711, 919
CaiI CAGNNNCTG 1 cut(s) 1328
CciI TCATGA 2 cut(s) 205, 1023
CfoI GCGC 1 cut(s) 1322
Cfr13I GGNCC 3 cut(s) 633, 773, 798
CseI GACGC 1 cut(s) 114
Csp6I GTAC 6 cut(s) 369, 953, 1116, 1269, 1516, 1576
CviQI GTAC 6 cut(s) 369, 953, 1116, 1269, 1516, 1576
DdeI CTNAG 2 cut(s) 1014, 1572
DpnI GATC 5 cut(s) 50, 179, 336, 993, 1110
DpnII GATC 5 cut(s) 48, 177, 334, 991, 1108
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 3 cut(s) 349, 702, 1301
Eco147I AGGCCT 1 cut(s) 262
Eco32I GATATC 1 cut(s) 1541
Eco47I GGWCC 2 cut(s) 633, 773
Eco57I CTGAAG 1 cut(s) 376
Eco88I CYCGRG 1 cut(s) 828
EcoO109I RGGNCCY 2 cut(s) 633, 798
EcoRI GAATTC 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 322
EcoRV GATATC 1 cut(s) 1541
EcoT14I CCWWGG 3 cut(s) 349, 702, 1301
EcoT22I ATGCAT 1 cut(s) 1203
ErhI CCWWGG 3 cut(s) 349, 702, 1301
FalI AAGNNNNNCTT 4 cut(s) 620, 652, 1059, 1091
FaqI GGGAC 3 cut(s) 795, 1014, 1369
FauI CCCGC 1 cut(s) 179
FauNDI CATATG 1 cut(s) 531
FbaI TGATCA 1 cut(s) 177
FblI GTMKAC 2 cut(s) 128, 1413
Fnu4HI GCNGC 7 cut(s) 219, 405, 408, 1011, 1071, 1094, 1529
FokI GGATG 3 cut(s) 563, 1210, 1434
Fsp4HI GCNGC 7 cut(s) 219, 405, 408, 1011, 1071, 1094, 1529
FspBI CTAG 9 cut(s) 350, 501, 662, 842, 1281, 1302, 1395, 1503, 1611
GlaI GCGC 1 cut(s) 1321
GluI GCNGC 7 cut(s) 219, 405, 408, 1011, 1071, 1094, 1529
HaeIII GGCC 3 cut(s) 262, 623, 799
HapII CCGG 2 cut(s) 1159, 1258
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 1322
Hin6I GCGC 1 cut(s) 1320
HinP1I GCGC 1 cut(s) 1320
HincII GTYRAC 2 cut(s) 129, 1263
HindII GTYRAC 2 cut(s) 129, 1263
HindIII AAGCTT 2 cut(s) 483, 1363
HinfI GANTC 7 cut(s) 83, 243, 506, 669, 977, 1027, 1226
HpaII CCGG 2 cut(s) 1159, 1258
HphI GGTGA 3 cut(s) 208, 290, 949
Hpy166II GTNNAC 4 cut(s) 129, 199, 1263, 1414
Hpy188I TCNGA 3 cut(s) 82, 1330, 1538
Hpy188III TCNNGA 9 cut(s) 206, 586, 776, 995, 1024, 1159, 1395, 1509, 1611
Hpy8I GTNNAC 4 cut(s) 129, 199, 1263, 1414
Hpy99I CGWCG 2 cut(s) 130, 154
HpyCH4III ACNGT 3 cut(s) 292, 952, 1621
HpyCH4IV ACGT 1 cut(s) 1254
HpyCH4V TGCA 8 cut(s) 433, 513, 709, 713, 1093, 1201, 1334, 1379
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 805, 1067, 1319
HpyF3I CTNAG 2 cut(s) 1014, 1572
HpySE526I ACGT 1 cut(s) 1254
HspAI GCGC 1 cut(s) 1320
Kpn2I TCCGGA 1 cut(s) 1158
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 5 cut(s) 48, 177, 334, 991, 1108
LmnI GCTCC 2 cut(s) 17, 1310
Lsp1109I GCAGC 5 cut(s) 205, 419, 997, 1057, 1105
LweI GCATC 9 cut(s) 36, 94, 289, 715, 883, 1188, 1210, 1321, 1558
MaeI CTAG 9 cut(s) 350, 501, 662, 842, 1281, 1302, 1395, 1503, 1611
MaeII ACGT 1 cut(s) 1254
MaeIII GTNAC 3 cut(s) 286, 1243, 1447
MalI GATC 5 cut(s) 50, 179, 336, 993, 1110
MboI GATC 5 cut(s) 48, 177, 334, 991, 1108
MboII GAAGA 9 cut(s) 22, 52, 135, 153, 382, 601, 759, 914, 1575
MflI RGATCY 1 cut(s) 991
MlyI GAGTC 2 cut(s) 515, 1036
MmeI TCCRAC 1 cut(s) 459
Mph1103I ATGCAT 1 cut(s) 1203
MroI TCCGGA 1 cut(s) 1158
MseI TTAA 4 cut(s) 270, 972, 1548, 1624
MslI CAYNNNNRTG 1 cut(s) 1523
MspI CCGG 2 cut(s) 1159, 1258
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 1 cut(s) 1320
MwoI GCNNNNNNNGC 4 cut(s) 413, 805, 1067, 1319
NcoI CCATGG 1 cut(s) 702
NdeI CATATG 1 cut(s) 531
NdeII GATC 5 cut(s) 48, 177, 334, 991, 1108
NlaIV GGNNCC 3 cut(s) 634, 800, 993
NmuCI GTSAC 1 cut(s) 1447
NsiI ATGCAT 1 cut(s) 1203
NspI RCATGY 3 cut(s) 713, 788, 1379
PaeI GCATGC 1 cut(s) 713
PaeR7I CTCGAG 1 cut(s) 828
PagI TCATGA 2 cut(s) 205, 1023
PaqCI CACCTGC 1 cut(s) 407
PceI AGGCCT 1 cut(s) 262
PcsI WCGNNNNNNNCGW 3 cut(s) 155, 164, 835
PfeI GAWTC 5 cut(s) 83, 243, 669, 977, 1226
PflFI GACNNNGTC 1 cut(s) 1253
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 7 cut(s) 220, 406, 409, 1012, 1072, 1095, 1530
PleI GAGTC 2 cut(s) 514, 1035
PpsI GAGTC 2 cut(s) 514, 1035
PpuMI RGGWCCY 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 3 cut(s) 634, 800, 993
PspPI GGNCC 3 cut(s) 633, 773, 798
PspPPI RGGWCCY 1 cut(s) 633
PspXI VCTCGAGB 1 cut(s) 828
PstI CTGCAG 1 cut(s) 1095
PstNI CAGNNNCTG 1 cut(s) 1328
PsuI RGATCY 1 cut(s) 991
PsyI GACNNNGTC 1 cut(s) 1253
RsaI GTAC 6 cut(s) 370, 954, 1117, 1270, 1517, 1577
RsaNI GTAC 6 cut(s) 369, 953, 1116, 1269, 1516, 1576
RseI CAYNNNNRTG 1 cut(s) 1523
SalI GTCGAC 1 cut(s) 127
SaqAI TTAA 4 cut(s) 270, 972, 1548, 1624
SatI GCNGC 7 cut(s) 219, 405, 408, 1011, 1071, 1094, 1529
Sau3AI GATC 5 cut(s) 48, 177, 334, 991, 1108
Sau96I GGNCC 3 cut(s) 633, 773, 798
ScaI AGTACT 2 cut(s) 954, 1270
SchI GAGTC 2 cut(s) 515, 1036
ScrFI CCNGG 1 cut(s) 324
SfaNI GCATC 9 cut(s) 36, 94, 289, 715, 883, 1188, 1210, 1321, 1558
SfcI CTRYAG 1 cut(s) 1091
Sfr274I CTCGAG 1 cut(s) 828
SinI GGWCC 2 cut(s) 633, 773
SlaI CTCGAG 1 cut(s) 828
SmiMI CAYNNNNRTG 1 cut(s) 1523
SmlI CTYRAG 2 cut(s) 828, 1360
SmoI CTYRAG 2 cut(s) 828, 1360
SphI GCATGC 1 cut(s) 713
SseBI AGGCCT 1 cut(s) 262
SsiI CCGC 3 cut(s) 186, 404, 1529
SspI AATATT 1 cut(s) 268
SspMI CTAG 9 cut(s) 350, 501, 662, 842, 1281, 1302, 1395, 1503, 1611
StuI AGGCCT 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 3 cut(s) 349, 702, 1301
TaaI ACNGT 3 cut(s) 292, 952, 1621
TaiI ACGT 1 cut(s) 1257
TaqI TCGA 5 cut(s) 86, 128, 438, 829, 838
TatI WGTACW 3 cut(s) 952, 1268, 1515
TauI GCSGC 2 cut(s) 407, 1531
TfiI GAWTC 5 cut(s) 83, 243, 669, 977, 1226
Tru1I TTAA 4 cut(s) 270, 972, 1548, 1624
Tru9I TTAA 4 cut(s) 270, 972, 1548, 1624
TscAI CASTG 5 cut(s) 310, 400, 459, 810, 1012
TseFI GTSAC 1 cut(s) 1447
TseI GCWGC 5 cut(s) 218, 407, 1010, 1070, 1093
Tsp45I GTSAC 1 cut(s) 1447
TspGWI ACGGA 1 cut(s) 1121
TspRI CASTG 5 cut(s) 310, 400, 459, 810, 1012
Tth111I GACNNNGTC 1 cut(s) 1253
Van91I CCANNNNNTGG 1 cut(s) 458
VpaK11BI GGWCC 2 cut(s) 633, 773
XapI RAATTY 4 cut(s) 359, 906, 1164, 1236
XbaI TCTAGA 2 cut(s) 1394, 1610
XceI RCATGY 3 cut(s) 713, 788, 1379
XhoI CTCGAG 1 cut(s) 828
XmaJI CCTAGG 2 cut(s) 349, 1301
XmiI GTMKAC 2 cut(s) 128, 1413
XspI CTAG 9 cut(s) 350, 501, 662, 842, 1281, 1302, 1395, 1503, 1611
ZrmI AGTACT 2 cut(s) 954, 1270
Zsp2I ATGCAT 1 cut(s) 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.