Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004092

Physical Location & Seq

Genomic Coordinates Forward (+)

29406616 .. 29410399

Gene Structure 3784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0260500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTCTCCCCGGAAAACACGAACTGGCTCTACGATTACGGTCTCATGGACGACGCCAACTTCCCCGTCTCCTCCTCCGCCTTCAACTGGCCCGTTCAGCCCAACATCCCCGGCTCCTCTAGCGTCAGTGTTGAACTTGATGGCTCATTGGGGGATGTAGAGGGACTCAAGGAATCTGGCTCAAAAAAGAGGGTTAGATCTGAATCATCCAGTGCATGTAGCTCCAAGGCATGTAGGGAGAAGTTGCGGAGGGATAGGCTGAACGACAAGTTTCTGGAATTGGGCTCTATATTGGAGCCTGGAAGGCCACCCAAGACGGACAAGGCTGCTATTTTGATTGATGCTGTCCGAATGGTGAATCAGTTACGTGGTGAAGCCCAGAAGTTGAAGGACTCAAATTCAAGCCTCCAGGAGAAGATCAAGGAATTGAAGACAGAGAAGACTGAACTTCGTGATGAGAAGCAGAGGCTGAAATCAGAGAAAGAGAAGTTGGAGCAGCAACTGAAGGCAATGACTGCACAGCCGAGCTTCATGCCAGCCCCTCCTGCAATTCCTGCTGCATTTGCTGCTCAAGGCCAAGCCCATGGCAACAAGATGGTGCCTTTCATTGGTTACCCTGGGGTTGCCATGTGGCAGTTCATGCCACCTGCTGCAGTGGATACATCCCAGGATCATGTACTCCGCCCACCAGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko00410 ko00770 ko00983 ko01100 map00240 map00410 map00770 map00983 map01100

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

232

Amino Acids

25.54

Weight (kDa)

8.44

Isoelectric Point (pI)

61.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	75 - 123	1.2e-09	Helix-loop-helix DNA-binding domain
bHLH_IRO3	PF23177	76 - 140	3.4e-10	Iron-related transcription factor 3 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12200
fragaria_vesca	FvH4_3g27770 FvH4_3g27770 FvH4_3g27770 FvH4_3g27770 FvH4_3g27770 FvH4_3g27770 FvH4_3g27770 FvH4_3g27770 FvH4_3g27770 FvH4_3g27770 FvH4_3g27770
malus_domestica	MD03G1164800.v1.1
prunus_persica	Prupe.4G264000_v2.0.a1 Prupe.4G264000_v2.0.a1 Prupe.4G264000_v2.0.a1 Prupe.4G264000_v2.0.a1 Prupe.4G264000_v2.0.a1 Prupe.4G264000_v2.0.a1 Prupe.4G264100_v2.0.a1 Prupe.4G264100_v2.0.a1
pyrus_communis	pycom12g08940
rosa_chinensis	RchiOBHm_Chr5g0050371
rosa_laevigata	RLG00000034700
rosa_multiflora	Rmu_sc0005060.1_g000018
rosa_roxburghii	Rroxscaffold_1G00026040 Rroxscaffold_1G00030540
rosa_rugosa	Rorug05G0260500
rosa_samantha	Rh5AG332200 Rh5BG342500 Rh5CG369700 Rh5DG355300
rosa_wichuraiana	Rw5G031400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	655
Acc36I	ACCTGC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	598
AciI	CCGC	3 cut(s)	78, 247, 682
AclWI	GGATC	1 cut(s)	678
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	678
AfiI	CCNNNNNNNGG	2 cut(s)	87, 608
AgsI	TTSAA	5 cut(s)	85, 134, 388, 402, 430
AjnI	CCWGG	4 cut(s)	298, 408, 616, 666
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	2 cut(s)	222, 528
AluI	AGCT	2 cut(s)	222, 528
Alw26I	GTCTC	3 cut(s)	10, 47, 73
AlwI	GGATC	1 cut(s)	678
AlwNI	CAGNNNCTG	2 cut(s)	469, 502
AoxI	GGCC	3 cut(s)	89, 305, 574
ApeKI	GCWGC	5 cut(s)	326, 496, 557, 566, 650
ApoI	RAATTY	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	90
AsuC2I	CCSGG	2 cut(s)	11, 111
AsuHPI	GGTGA	2 cut(s)	367, 383
BanI	GGYRCC	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	437, 446
BbvI	GCAGC	5 cut(s)	313, 508, 544, 553, 637
BccI	CCATC	2 cut(s)	134, 589
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BciT130I	CCWGG	4 cut(s)	300, 410, 618, 668
BciVI	GTATCC	1 cut(s)	652
BcnI	CCSGG	2 cut(s)	11, 111
BcoDI	GTCTC	3 cut(s)	10, 47, 73
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	655
BfuI	GTATCC	1 cut(s)	652
BglI	GCCNNNNNGGC	1 cut(s)	304
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	5 cut(s)	327, 497, 558, 567, 651
BlsI	GCNGC	5 cut(s)	328, 498, 559, 568, 652
Bme1390I	CCNGG	6 cut(s)	11, 111, 300, 410, 618, 668
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	3 cut(s)	115, 297, 600
BmrFI	CCNGG	6 cut(s)	11, 111, 300, 410, 618, 668
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	2 cut(s)	437, 446
BpmI	CTGGAG	1 cut(s)	392
BpuEI	CTTGAG	2 cut(s)	152, 555
BpuMI	CCSGG	2 cut(s)	11, 111
BsaAI	YACGTR	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	2 cut(s)	10, 47
BsaJI	CCNNGG	7 cut(s)	9, 109, 225, 583, 616, 617, 666
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 608
Bse1I	ACTGG	4 cut(s)	29, 92, 210, 689
Bse3DI	GCAATG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	202
BseBI	CCWGG	4 cut(s)	300, 410, 618, 668
BseDI	CCNNGG	7 cut(s)	9, 109, 225, 583, 616, 617, 666
BseGI	GGATG	4 cut(s)	105, 160, 206, 662
BseJI	GATNNNNATC	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	87, 608
BseMI	GCAATG	1 cut(s)	516
BseNI	ACTGG	4 cut(s)	29, 92, 210, 689
BseRI	GAGGAG	3 cut(s)	61, 64, 106
BseXI	GCAGC	5 cut(s)	313, 508, 544, 553, 637
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	3 cut(s)	91, 307, 576
BshNI	GGYRCC	1 cut(s)	598
BsiSI	CCGG	2 cut(s)	11, 111
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	87, 608
BsmAI	GTCTC	3 cut(s)	10, 47, 73
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	91, 307, 576
Bso31I	GGTCTC	2 cut(s)	10, 47
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	197, 417, 670
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	3 cut(s)	78, 247, 682
BspANI	GGCC	3 cut(s)	91, 307, 576
BspLI	GGNNCC	3 cut(s)	115, 297, 600
BspMAI	CTGCAG	1 cut(s)	655
BspMI	ACCTGC	1 cut(s)	655
BspPI	GGATC	1 cut(s)	678
BspT107I	GGYRCC	1 cut(s)	598
BspTNI	GGTCTC	2 cut(s)	10, 47
BsrDI	GCAATG	1 cut(s)	516
BsrI	ACTGG	4 cut(s)	29, 92, 210, 689
BssECI	CCNNGG	7 cut(s)	9, 109, 225, 583, 616, 617, 666
BssMI	GATC	3 cut(s)	197, 417, 670
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	2 cut(s)	225, 583
Bst2UI	CCWGG	4 cut(s)	300, 410, 618, 668
Bst4CI	ACNGT	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	4 cut(s)	515, 554, 566, 640
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	537
BstDSI	CCRYGG	1 cut(s)	583
BstEII	GGTNACC	1 cut(s)	611
BstF5I	GGATG	4 cut(s)	105, 160, 206, 662
BstKTI	GATC	3 cut(s)	200, 420, 673
BstMAI	GTCTC	3 cut(s)	10, 47, 73
BstMBI	GATC	3 cut(s)	197, 417, 670
BstMWI	GCNNNNNNNGC	9 cut(s)	97, 120, 304, 515, 545, 554, 563, 566, 640
BstNI	CCWGG	4 cut(s)	300, 410, 618, 668
BstNSI	RCATGY	2 cut(s)	219, 234
BstPI	GGTNACC	1 cut(s)	611
BstSCI	CCNGG	6 cut(s)	9, 109, 298, 408, 616, 666
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	5 cut(s)	313, 508, 544, 553, 637
BstV2I	GAAGAC	2 cut(s)	437, 446
BstX2I	RGATCY	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	3 cut(s)	91, 307, 576
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	4 cut(s)	105, 160, 206, 662
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	3 cut(s)	133, 217, 660
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	1 cut(s)	537
CaiI	CAGNNNCTG	2 cut(s)	469, 502
Cfr13I	GGNCC	1 cut(s)	90
CseI	GACGC	2 cut(s)	62, 112
Csp6I	GTAC	1 cut(s)	677
CviAII	CATG	8 cut(s)	46, 216, 231, 532, 584, 628, 640, 674
CviQI	GTAC	1 cut(s)	677
DpnI	GATC	3 cut(s)	199, 419, 672
DpnII	GATC	3 cut(s)	197, 417, 670
EciI	GGCGGA	2 cut(s)	67, 671
Eco130I	CCWWGG	2 cut(s)	225, 583
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	2 cut(s)	10, 47
Eco57I	CTGAAG	1 cut(s)	524
Eco91I	GGTNACC	1 cut(s)	611
EcoO65I	GGTNACC	1 cut(s)	611
EcoRII	CCWGG	4 cut(s)	298, 408, 616, 666
EcoT14I	CCWWGG	2 cut(s)	225, 583
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	2 cut(s)	225, 583
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	8 cut(s)	49, 219, 234, 535, 587, 631, 643, 677
FaiI	YATR	9 cut(s)	47, 217, 232, 290, 533, 585, 629, 641, 675
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	8 cut(s)	45, 215, 230, 531, 583, 627, 639, 673
Fnu4HI	GCNGC	5 cut(s)	327, 497, 558, 567, 651
FokI	GGATG	4 cut(s)	92, 167, 193, 649
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	5 cut(s)	327, 497, 558, 567, 651
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	5 cut(s)	327, 497, 558, 567, 651
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	91, 307, 576
HapII	CCGG	2 cut(s)	11, 111
HgaI	GACGC	2 cut(s)	62, 112
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	8 cut(s)	49, 219, 234, 535, 587, 631, 643, 677
HinfI	GANTC	5 cut(s)	165, 173, 203, 358, 392
HpaII	CCGG	2 cut(s)	11, 111
HphI	GGTGA	2 cut(s)	367, 383
Hpy188I	TCNGA	3 cut(s)	202, 350, 478
Hpy188III	TCNNGA	2 cut(s)	275, 452
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	91, 297, 382, 499
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	5 cut(s)	215, 518, 548, 560, 653
HpyF10VI	GCNNNNNNNGC	9 cut(s)	97, 120, 304, 515, 545, 554, 563, 566, 640
HpySE526I	ACGT	1 cut(s)	367
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	8 cut(s)	49, 219, 234, 535, 587, 631, 643, 677
Kzo9I	GATC	3 cut(s)	197, 417, 670
LmnI	GCTCC	4 cut(s)	119, 227, 295, 493
Lsp1109I	GCAGC	5 cut(s)	313, 508, 544, 553, 637
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	363, 611
MalI	GATC	3 cut(s)	199, 419, 672
MboI	GATC	3 cut(s)	197, 417, 670
MboII	GAAGA	3 cut(s)	427, 442, 451
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	4 cut(s)	278, 397, 425, 549
MlyI	GAGTC	2 cut(s)	159, 386
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	9 cut(s)	82, 85, 127, 154, 183, 243, 416, 459, 552
MseI	TTAA	1 cut(s)	697
MspI	CCGG	2 cut(s)	11, 111
MspR9I	CCNGG	6 cut(s)	11, 111, 300, 410, 618, 668
MvaI	CCWGG	4 cut(s)	300, 410, 618, 668
MwoI	GCNNNNNNNGC	9 cut(s)	97, 120, 304, 515, 545, 554, 563, 566, 640
NciI	CCSGG	2 cut(s)	11, 111
NcoI	CCATGG	1 cut(s)	583
NdeII	GATC	3 cut(s)	197, 417, 670
NlaIII	CATG	8 cut(s)	49, 219, 234, 535, 587, 631, 643, 677
NlaIV	GGNNCC	3 cut(s)	115, 297, 600
NmeAIII	GCCGAG	1 cut(s)	549
NspI	RCATGY	2 cut(s)	219, 234
PaqCI	CACCTGC	1 cut(s)	655
PasI	CCCWGGG	1 cut(s)	617
PfeI	GAWTC	3 cut(s)	173, 203, 358
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	5 cut(s)	328, 498, 559, 568, 652
PleI	GAGTC	2 cut(s)	159, 386
PpsI	GAGTC	2 cut(s)	159, 386
Ppu21I	YACGTR	1 cut(s)	368
Psp6I	CCWGG	4 cut(s)	298, 408, 616, 666
PspEI	GGTNACC	1 cut(s)	611
PspGI	CCWGG	4 cut(s)	298, 408, 616, 666
PspN4I	GGNNCC	3 cut(s)	115, 297, 600
PspPI	GGNCC	1 cut(s)	90
PsrI	GAACNNNNNNTAC	2 cut(s)	14, 46
PstI	CTGCAG	1 cut(s)	655
PstNI	CAGNNNCTG	2 cut(s)	469, 502
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	697
SatI	GCNGC	5 cut(s)	327, 497, 558, 567, 651
Sau3AI	GATC	3 cut(s)	197, 417, 670
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	2 cut(s)	159, 386
ScrFI	CCNGG	6 cut(s)	11, 111, 300, 410, 618, 668
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	4 cut(s)	224, 370, 530, 649
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	651
SmlI	CTYRAG	2 cut(s)	167, 570
SmoI	CTYRAG	2 cut(s)	167, 570
Sse9I	AATT	4 cut(s)	278, 397, 425, 549
SsiI	CCGC	3 cut(s)	78, 247, 682
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	6 cut(s)	9, 109, 298, 408, 616, 666
StyI	CCWWGG	2 cut(s)	225, 583
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	1 cut(s)	370
TasI	AATT	4 cut(s)	278, 397, 425, 549
TatI	WGTACW	1 cut(s)	676
TfiI	GAWTC	3 cut(s)	173, 203, 358
Tru1I	TTAA	1 cut(s)	697
Tru9I	TTAA	1 cut(s)	697
TscAI	CASTG	3 cut(s)	133, 217, 660
TseI	GCWGC	5 cut(s)	326, 496, 557, 566, 650
TspDTI	ATGAA	3 cut(s)	520, 595, 628
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	3 cut(s)	133, 217, 660
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	2 cut(s)	219, 234
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.