Rroxscaffold_1G00026040

Amidohydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004092
Physical Location & Seq
Reverse (-)
32718925 .. 32719310
386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026040.1

Sequence Viewer

Length: 237 bp
ATGGTTGGAGCTTCACTGTCATCACCGCATTTGAAGAGCGCCGCTATCGAATCGAACAAGATGGAATCATTGTTCTTTGTCAGCCCCAATATCAAGGTTGGTGATGATGTTACCGTGCTTGATGCCGGTAGAAAGTTTGTCATGCCGGGAGGAATCGATCCTCATACTCACCTAGCCATGGAGTTCATGGGTACGAAACTATTGATGATTTCTTCGGTGGTCAAGCTGCAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko00410 ko00770 ko00983 ko01100 map00240 map00410 map00770 map00983 map01100
Pfam Domains
Protein Families
Amidohydro_1

Protein Analysis

78

Amino Acids

8.4

Weight (kDa)

6.9

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 26, 42
AclWI GGATC 1 cut(s) 152
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 34
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 2 cut(s) 11, 226
AluI AGCT 2 cut(s) 11, 226
AlwI GGATC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 226, 229
AspLEI GCGC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 3 cut(s) 15, 113, 161
BbvI GCAGC 1 cut(s) 213
BccI CCATC 1 cut(s) 55
BcnI CCSGG 1 cut(s) 147
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 227
BfoI RGCGCY 1 cut(s) 42
BisI GCNGC 3 cut(s) 42, 227, 230
BlsI GCNGC 3 cut(s) 43, 228, 231
Bme1390I CCNGG 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 112
BpuMI CCSGG 1 cut(s) 147
Bsa29I ATCGAT 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 213
BshVI ATCGAT 1 cut(s) 156
BsiSI CCGG 2 cut(s) 126, 146
BslI CCNNNNNNNGG 1 cut(s) 178
Bsp143I GATC 1 cut(s) 157
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 2 cut(s) 26, 42
BspDI ATCGAT 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 231
BspPI GGATC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 18, 115
Bst6I CTCTTC 1 cut(s) 29
BstDSI CCRYGG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 156
BsuTUI ATCGAT 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 14
CfoI GCGC 1 cut(s) 41
Cfr10I RCCGGY 1 cut(s) 125
ClaI ATCGAT 1 cut(s) 156
Csp6I GTAC 1 cut(s) 192
CviAII CATG 3 cut(s) 142, 178, 187
CviJI RGCY 4 cut(s) 11, 84, 176, 226
CviKI_1 RGCY 4 cut(s) 11, 84, 176, 226
CviQI GTAC 1 cut(s) 192
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 3 cut(s) 145, 181, 190
FaiI YATR 4 cut(s) 143, 165, 179, 188
FatI CATG 3 cut(s) 141, 177, 186
Fnu4HI GCNGC 3 cut(s) 42, 227, 230
Fsp4HI GCNGC 3 cut(s) 42, 227, 230
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 40
GluI GCNGC 3 cut(s) 42, 227, 230
HaeII RGCGCY 1 cut(s) 42
HapII CCGG 2 cut(s) 126, 146
HhaI GCGC 1 cut(s) 41
Hin1II CATG 3 cut(s) 145, 181, 190
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 3 cut(s) 50, 65, 153
HpaII CCGG 2 cut(s) 126, 146
HphI GGTGA 3 cut(s) 15, 113, 161
HpyCH4III ACNGT 2 cut(s) 18, 115
HpyCH4V TGCA 1 cut(s) 229
Hsp92II CATG 3 cut(s) 145, 181, 190
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 2 cut(s) 139, 159
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 46, 204
MnlI CCTC 2 cut(s) 143, 171
MspI CCGG 2 cut(s) 126, 146
MspR9I CCNGG 1 cut(s) 147
NciI CCSGG 1 cut(s) 147
NcoI CCATGG 1 cut(s) 177
NdeII GATC 1 cut(s) 157
NlaIII CATG 3 cut(s) 145, 181, 190
PciSI GCTCTTC 1 cut(s) 29
PfeI GAWTC 3 cut(s) 50, 65, 153
PkrI GCNGC 3 cut(s) 43, 228, 231
PstI CTGCAG 1 cut(s) 231
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 29
SatI GCNGC 3 cut(s) 42, 227, 230
Sau3AI GATC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 147
SetI ASST 4 cut(s) 13, 99, 174, 228
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 227
SsiI CCGC 2 cut(s) 26, 42
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 18, 115
TaqI TCGA 3 cut(s) 48, 53, 156
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 3 cut(s) 50, 65, 153
TscAI CASTG 1 cut(s) 21
TseI GCWGC 2 cut(s) 226, 229
TspDTI ATGAA 1 cut(s) 175
TspRI CASTG 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.