Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011252

Physical Location & Seq

Genomic Coordinates Reverse (-)

24225429 .. 24232397

Gene Structure 6969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1176600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2553 bp

ATGGCAGACACTCCGAAGAGGGTCCTGCAGTCCCCCAAGAAATCCAAGCGTTCCAATTCCAAGCCACCGCCGCCTCTAACTCCCACAACTCCACGAACCCCTACTCCCCGCCGGTCGGCTCGCCGGGCCTCGCTGCAGGCCAGTTCCGCCACTTCCCAGAAGCTATTTGAAGATTCACCGAAGAAAGACGCGACGCCTCAACACGAATTGCGAAATGATTCGGGCAAAACACGAAGAAAAGGGGGAAATGCGGGAACTGCAAAAACCCCAAAATCTGCTGAGAAGGGCAAGATGTGGAAGGATAAAGAGGAGGCAGATGTGACCGAGGTTGAAATTTCAATATCTCCTGTGACTCCAGGGCAGTCGGAGATTAAAAAGAGGAAAAGGGAGCAGAAAAGCACGGTGGTTACGCGTTCTAGGGCCTCGAAAAATGTCAATTTTGAGGAGAGCAAGAGCGTTAAGTCAGTGCCGAAAAGACGGGTTTATTATAAGAAGGTTGTGTATGATGGGGGTGAGTTTGAAGTAGGGGATAACGTGTATGTGAGGAGGAGAGAGGATGCGAGTTCGGATGAGGATTTGGATGAAGTGGAGGAATGTAGGGTTTGCTTTAAGTCTGGGAAGGTTTTGATGATTGAGTGTGATGATTGCTTACGTGGGTTTCATTTGAAATGCTTGAAACCTCCACTGAAGGATGTTCCTGAAGGGGACTGGATTTGCGGGTTTTGTGAGGCTCGCAAGTTGGGTAAAAAGGTCCAGCTTCCGACACCTCCAGAGGGGAAGAAGCTGGTTAGAACATTGAGGGAGAAGCTTCTTTCCAGCGATTTGTGGGCTGCCCACATTGAAAGCATATGGAAAGAAGTAGATGGAAGCTATTGGTGTCGGGTACGTTGGTATATAATCCCAGAAGAGACTGCAACTGGAAGACAACCTCATAATTTGCGGAGAGAAATTTATCGCACAAATGATTTTGCTGACATTGAGATGGAATCTATTCTTCGACATTGTTTTGTGATGAATCCTAAAGAATATGCCAAAGCAAGCAATGAAGGGGATGATGTTTTTCTATGCGAATATGAATATGATATTCATTGGCACAGCTTCAAGCGTCTTGCTGAAGTTGATGACGGTGAAGGGGATGATGATGAAGTTGGAAGTGATGAAGATTGGAAAGTTGGCAAAGACTTGGACTTCGATTCAGAAGACATGGACTATGACGAGGAAAGCATCAAAAGTATACTAGCTAAACCATTTCGAGCTCATGAGTTGGCTGCAAATTCACAGAAGGGGCGGTTCTTTGGACTTCAAAAGATAGGAATGAAGAAAATCCCAGAGCACGTAAGATGCCACAAGCAGACTGATCTTGAAATAGCAAAGGCAGCACTTCTGCTGTCATCCTTGCCTAAGTCTTTGCCTTGCAGGGATAAAGAAATGTTGGAAATAACTGCATTTATCAAAGATTCTATCTCCGATGATAAGTGTTTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAAACAATGAGTGTGCTAGCAGTAATGAAGAATCTAAGGTCTGAAGTTGATGCCGGAAGTATAAGACCCTACTGTTTTGTGGAGATAAATGGTCTGAAGTTGGCATCACCAGAGAATATCTACAGGGTTATATATGAAGCGTTAAGCGGGCACAGAGTTGGTTGGAAAAAGGCTCTCCACTTGCTAAATGAGCGATTCTCTGAAGGAAAGAAAATTGGTAAAGAGGATGACAAACCTTGTATTCTTCTCATTGATGAACTCGATCTTCTCCTGACCAGAAACCAGTCGGTTCTATACAACATTCTTGACTGGCCTACTAAGCCACACTCAAAGTTAGTTGTAATAGGCATAGCAAATACCATGGATCTTCCTGAGAAGTTGCTTCCTCGTATTTCAAGTCGTATGGGAATCCAAAGGCTTTGCTTTGGCCCCTATAATTACCAACAGCTTCAAGAAATAGTTTCGAGCCGCCTTAAAGGAATTAATGCATTTAAACAACAAGCTATAGAGTTTGCTTCAAGAAAGGTGGCAGCTATTTCAGGGGATGCACGTCGTGCACTGGAGATATGCAGGCGTGCAGCAGAAATCACAGATTATCGACTAAAGAAACTAGCCTCAACCCCTAATGATGCATCTGAAGGAAAAACCCTTGTTGGTATGGCAGAGGTTGAAGCAGCCATCCAAGAAATGTTCCAGGCACCTCATATTCAAGTGATGAAAACTTGTTCCAAACTGAGTAAAGTATTTTTGACTGCTATGGTGTATGAACTGTATAAAACAGGAATGGGAGAAACTACTTTTGAAAAGTTGGCAATGACAGTCTCATGTCTCTGTACCAGCAATGGAGAAGCGTTTCCTGAACATGACACACTATTAAAGATAGGTTGTAAGCTCGGCGAATGCAGAATTATTTTGTGTGAATCAGGAGCAAAGCACAGGTTGCAGAAGTTGCAGCTCAACTTTCCAAGTGACGATGTAGCGTTTGCACTCAAAGACAACAAGGAGCTACCTTGGTTGGCCAAGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

851

Amino Acids

96.22

Weight (kDa)

8.7

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	199 - 242	9.1e-09	PHD-finger
BAH	PF01426	278 - 369	3.1e-11	BAH domain
AAA_16	PF13191	470 - 614	3.8e-07	AAA ATPase domain
AAA_22	PF13401	496 - 622	7.1e-09	AAA domain
AAA	PF00004	499 - 644	1.6e-17	ATPase family associated with various cellular activities (AAA)
Cdc6-ORC-like_ATPase_lid	PF22606	652 - 704	1e-08	Cdc6/ORC-like, ATPase lid domain
AAA_lid_10	PF17872	671 - 705	1.7e-10	AAA lid domain
WHD_Cdc6	PF09079	745 - 836	6.4e-09	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12620 AT4G14700
fragaria_vesca	FvH4_7g17041
malus_domestica	MD03G1176600.v1.1 MD11G1197200.v1.1
prunus_persica	Prupe.4G246200_v2.0.a1 Prupe.5G048200_v2.0.a1 Prupe.5G048200_v2.0.a1
pyrus_communis	pycom03g13390
rosa_chinensis	RchiOBHm_Chr3g0490671
rosa_laevigata	RLG00000022877
rosa_multiflora	Rmu_sc0006380.1_g000017 Rmu_sc0012075.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393320
rosa_rugosa	Rorug03G0245400
rosa_samantha	Rh3AG294600 Rh3BG330800 Rh3CG328300 Rh3DG327700
rosa_wichuraiana	Rw3G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AccB1I	GGYRCC	1 cut(s)	2218
AccI	GTMKAC	1 cut(s)	1234
AccII	CGCG	2 cut(s)	191, 412
AclWI	GGATC	1 cut(s)	1893
AcoI	YGGCCR	1 cut(s)	2538
AcsI	RAATTY	3 cut(s)	333, 948, 1273
AcuI	CTGAAG	7 cut(s)	707, 720, 1134, 1584, 1637, 1743, 2178
AcyI	GRCGYC	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	2075
AfaI	GTAC	3 cut(s)	885, 1496, 2356
AfiI	CCNNNNNNNGG	3 cut(s)	115, 773, 1517
AflIII	ACRYGT	2 cut(s)	410, 534
AjiI	CACGTC	1 cut(s)	2072
AjnI	CCWGG	3 cut(s)	355, 1510, 2214
AloI	GAACNNNNNNTCC	2 cut(s)	88, 120
Alw21I	GWGCWC	3 cut(s)	1258, 1335, 2080
Alw26I	GTCTC	3 cut(s)	902, 2347, 2354
Alw44I	GTGCAC	1 cut(s)	2076
AlwI	GGATC	1 cut(s)	1893
AoxI	GGCC	6 cut(s)	126, 138, 420, 1832, 1948, 2538
ApaLI	GTGCAC	1 cut(s)	2076
ApeKI	GCWGC	8 cut(s)	133, 830, 1268, 1376, 2051, 2099, 2195, 2473
ApoI	RAATTY	3 cut(s)	333, 948, 1273
ArsI	GACNNNNNNTTYG	2 cut(s)	1172, 1204
AseI	ATTAAT	1 cut(s)	2004
Asp700I	GAANNNNTTC	3 cut(s)	217, 990, 2373
AspS9I	GGNCC	5 cut(s)	22, 126, 420, 751, 1949
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	4 cut(s)	168, 524, 1139, 1620
AsuNHI	GCTAGC	1 cut(s)	1537
AvaII	GGWCC	2 cut(s)	22, 751
BaeGI	GKGCMC	2 cut(s)	1674, 2080
BaeI	ACNNNNGTAYC	2 cut(s)	875, 908
BalI	TGGCCA	1 cut(s)	2540
BanI	GGYRCC	1 cut(s)	2218
BanII	GRGCYC	1 cut(s)	1258
BbsI	GAAGAC	2 cut(s)	928, 1206
Bbv12I	GWGCWC	3 cut(s)	1258, 1335, 2080
BbvI	GCAGC	8 cut(s)	120, 817, 1255, 1388, 2063, 2111, 2207, 2485
BccI	CCATC	4 cut(s)	500, 857, 976, 2207
BciT130I	CCWGG	3 cut(s)	357, 1512, 2216
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	3 cut(s)	902, 2347, 2354
BfaI	CTAG	4 cut(s)	417, 1238, 1538, 2132
BfmI	CTRYAG	4 cut(s)	26, 134, 1642, 2025
Bme1390I	CCNGG	4 cut(s)	125, 357, 1512, 2216
Bme18I	GGWCC	2 cut(s)	22, 751
BmgBI	CACGTC	1 cut(s)	2072
BmgT120I	GGNCC	5 cut(s)	22, 126, 420, 751, 1949
BmiI	GGNNCC	3 cut(s)	23, 1951, 2220
BmrFI	CCNGG	4 cut(s)	125, 357, 1512, 2216
BmsI	GCATC	8 cut(s)	547, 1233, 1331, 1561, 1634, 2056, 2140, 2162
BmtI	GCTAGC	1 cut(s)	1541
BpiI	GAAGAC	2 cut(s)	928, 1206
BplI	GAGNNNNNCTC	2 cut(s)	1703, 1735
BpmI	CTGGAG	3 cut(s)	339, 753, 2102
BpuMI	CCSGG	1 cut(s)	125
BsaAI	YACGTR	2 cut(s)	653, 1336
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	4 cut(s)	324, 356, 1881, 2531
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 773, 1517
Bse118I	RCCGGY	1 cut(s)	111
Bse1I	ACTGG	7 cut(s)	141, 713, 922, 1522, 1804, 1835, 2085
Bse3DI	GCAATG	3 cut(s)	1048, 2340, 2368
BseBI	CCWGG	3 cut(s)	357, 1512, 2216
BseDI	CCNNGG	4 cut(s)	324, 356, 1881, 2531
BseLI	CCNNNNNNNGG	3 cut(s)	115, 773, 1517
BseMI	GCAATG	3 cut(s)	1048, 2340, 2368
BseMII	CTCAG	3 cut(s)	270, 1884, 2246
BseNI	ACTGG	7 cut(s)	141, 713, 922, 1522, 1804, 1835, 2085
BseRI	GAGGAG	4 cut(s)	323, 458, 559, 562
BseSI	GKGCMC	2 cut(s)	1674, 2080
BseXI	GCAGC	8 cut(s)	120, 817, 1255, 1388, 2063, 2111, 2207, 2485
BsgI	GTGCAG	1 cut(s)	2118
Bsh1236I	CGCG	2 cut(s)	191, 412
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	6 cut(s)	128, 140, 422, 1834, 1950, 2540
BshNI	GGYRCC	1 cut(s)	2218
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	3 cut(s)	1258, 1335, 2080
BsiSI	CCGG	3 cut(s)	112, 124, 1575
BslFI	GGGAC	3 cut(s)	16, 719, 1497
BslI	CCNNNNNNNGG	3 cut(s)	115, 773, 1517
BsmAI	GTCTC	3 cut(s)	902, 2347, 2354
BsmFI	GGGAC	3 cut(s)	16, 719, 1497
BsmI	GAATGC	1 cut(s)	2426
BsnI	GGCC	6 cut(s)	128, 140, 422, 1834, 1950, 2540
Bsp1286I	GDGCHC	4 cut(s)	1258, 1335, 1674, 2080
Bsp1407I	TGTACA	1 cut(s)	1494
Bsp143I	GATC	3 cut(s)	1357, 1783, 1885
Bsp19I	CCATGG	1 cut(s)	1881
BspANI	GGCC	6 cut(s)	128, 140, 422, 1834, 1950, 2540
BspCNI	CTCAG	3 cut(s)	271, 1885, 2247
BspFNI	CGCG	2 cut(s)	191, 412
BspHI	TCATGA	1 cut(s)	1258
BspLI	GGNNCC	3 cut(s)	23, 1951, 2220
BspMAI	CTGCAG	2 cut(s)	30, 138
BspOI	GCTAGC	1 cut(s)	1541
BspPI	GGATC	1 cut(s)	1893
BspT107I	GGYRCC	1 cut(s)	2218
BsrDI	GCAATG	3 cut(s)	1048, 2340, 2368
BsrFI	RCCGGY	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	1494
BsrI	ACTGG	7 cut(s)	141, 713, 922, 1522, 1804, 1835, 2085
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	4 cut(s)	324, 356, 1881, 2531
BssMI	GATC	3 cut(s)	1357, 1783, 1885
BssNAI	GTATAC	1 cut(s)	1235
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	2 cut(s)	1881, 2531
Bst1107I	GTATAC	1 cut(s)	1235
Bst2UI	CCWGG	3 cut(s)	357, 1512, 2216
Bst4CI	ACNGT	5 cut(s)	403, 1127, 1595, 2292, 2341
Bst6I	CTCTTC	2 cut(s)	11, 900
BstACI	GRCGYC	1 cut(s)	194
BstAPI	GCANNNNNTGC	3 cut(s)	2075, 2461, 2470
BstAUI	TGTACA	1 cut(s)	1494
BstBAI	YACGTR	2 cut(s)	653, 1336
BstC8I	GCNNGC	8 cut(s)	121, 138, 733, 1039, 1539, 1670, 2093, 2097
BstDEI	CTNAG	6 cut(s)	279, 1401, 1556, 1839, 1893, 2255
BstDSI	CCRYGG	1 cut(s)	1881
BstFNI	CGCG	2 cut(s)	191, 412
BstKTI	GATC	3 cut(s)	1360, 1786, 1888
BstMAI	GTCTC	3 cut(s)	902, 2347, 2354
BstMBI	GATC	3 cut(s)	1357, 1783, 1885
BstMCI	CGRYCG	1 cut(s)	116
BstNI	CCWGG	3 cut(s)	357, 1512, 2216
BstSCI	CCNGG	4 cut(s)	123, 355, 1510, 2214
BstSFI	CTRYAG	4 cut(s)	26, 134, 1642, 2025
BstSLI	GKGCMC	2 cut(s)	1674, 2080
BstUI	CGCG	2 cut(s)	191, 412
BstV1I	GCAGC	8 cut(s)	120, 817, 1255, 1388, 2063, 2111, 2207, 2485
BstV2I	GAAGAC	2 cut(s)	928, 1206
BstX2I	RGATCY	1 cut(s)	1885
BstYI	RGATCY	1 cut(s)	1885
BstZ17I	GTATAC	1 cut(s)	1235
BsuRI	GGCC	6 cut(s)	128, 140, 422, 1834, 1950, 2540
BtgI	CCRYGG	1 cut(s)	1881
BtrI	CACGTC	1 cut(s)	2072
BtsIMutI	CAGTG	3 cut(s)	471, 683, 2078
Cac8I	GCNNGC	8 cut(s)	121, 138, 733, 1039, 1539, 1670, 2093, 2097
CciI	TCATGA	1 cut(s)	1258
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	5 cut(s)	22, 126, 420, 751, 1949
CseI	GACGC	3 cut(s)	197, 202, 1094
Csp6I	GTAC	3 cut(s)	884, 1495, 2355
CspCI	CAANNNNNGTGG	2 cut(s)	2028, 2063
CviAII	CATG	6 cut(s)	1204, 1259, 1502, 1882, 2346, 2384
CviQI	GTAC	3 cut(s)	884, 1495, 2355
DdeI	CTNAG	6 cut(s)	279, 1401, 1556, 1839, 1893, 2255
DpnI	GATC	3 cut(s)	1359, 1785, 1887
DpnII	GATC	3 cut(s)	1357, 1783, 1885
DraI	TTTAAA	1 cut(s)	2014
DraIII	CACNNNGTG	1 cut(s)	2075
EaeI	YGGCCR	1 cut(s)	2538
Eam1104I	CTCTTC	2 cut(s)	11, 900
EarI	CTCTTC	2 cut(s)	11, 900
EciI	GGCGGA	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	1256
Eco130I	CCWWGG	2 cut(s)	1881, 2531
Eco24I	GRGCYC	1 cut(s)	1258
Eco47I	GGWCC	2 cut(s)	22, 751
Eco53kI	GAGCTC	1 cut(s)	1256
Eco57I	CTGAAG	7 cut(s)	707, 720, 1134, 1584, 1637, 1743, 2178
EcoICRI	GAGCTC	1 cut(s)	1256
EcoO109I	RGGNCCY	2 cut(s)	22, 420
EcoRII	CCWGG	3 cut(s)	355, 1510, 2214
EcoT14I	CCWWGG	2 cut(s)	1881, 2531
EcoT22I	ATGCAT	2 cut(s)	2011, 2155
EcoT38I	GRGCYC	1 cut(s)	1258
ErhI	CCWWGG	2 cut(s)	1881, 2531
FaeI	CATG	6 cut(s)	1207, 1262, 1505, 1885, 2349, 2387
FaqI	GGGAC	3 cut(s)	16, 719, 1497
FatI	CATG	6 cut(s)	1203, 1258, 1501, 1881, 2345, 2383
FauI	CCCGC	4 cut(s)	116, 244, 710, 1661
FauNDI	CATATG	1 cut(s)	848
FblI	GTMKAC	1 cut(s)	1234
FriOI	GRGCYC	1 cut(s)	1258
FspBI	CTAG	4 cut(s)	417, 1238, 1538, 2132
GsuI	CTGGAG	3 cut(s)	339, 753, 2102
HaeIII	GGCC	6 cut(s)	128, 140, 422, 1834, 1950, 2540
HapII	CCGG	3 cut(s)	112, 124, 1575
HgaI	GACGC	3 cut(s)	197, 202, 1094
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	6 cut(s)	1207, 1262, 1505, 1885, 2349, 2387
HindIII	AAGCTT	1 cut(s)	806
HpaII	CCGG	3 cut(s)	112, 124, 1575
HphI	GGTGA	4 cut(s)	168, 524, 1139, 1620
Hpy166II	GTNNAC	2 cut(s)	1235, 2078
Hpy8I	GTNNAC	2 cut(s)	1235, 2078
Hpy99I	CGWCG	2 cut(s)	196, 2076
HpyCH4III	ACNGT	5 cut(s)	403, 1127, 1595, 2292, 2341
HpyCH4IV	ACGT	6 cut(s)	534, 652, 886, 1335, 1486, 2071
HpyF3I	CTNAG	6 cut(s)	279, 1401, 1556, 1839, 1893, 2255
HpySE526I	ACGT	6 cut(s)	534, 652, 886, 1335, 1486, 2071
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	6 cut(s)	1207, 1262, 1505, 1885, 2349, 2387
Kzo9I	GATC	3 cut(s)	1357, 1783, 1885
LmnI	GCTCC	3 cut(s)	388, 2447, 2524
Lsp1109I	GCAGC	8 cut(s)	120, 817, 1255, 1388, 2063, 2111, 2207, 2485
LweI	GCATC	8 cut(s)	547, 1233, 1331, 1561, 1634, 2056, 2140, 2162
MaeI	CTAG	4 cut(s)	417, 1238, 1538, 2132
MaeII	ACGT	6 cut(s)	534, 652, 886, 1335, 1486, 2071
MaeIII	GTNAC	4 cut(s)	319, 349, 406, 2489
MalI	GATC	3 cut(s)	1359, 1785, 1887
MboI	GATC	3 cut(s)	1357, 1783, 1885
MflI	RGATCY	1 cut(s)	1885
MhlI	GDGCHC	4 cut(s)	1258, 1335, 1674, 2080
MlsI	TGGCCA	1 cut(s)	2540
MluI	ACGCGT	1 cut(s)	410
MluNI	TGGCCA	1 cut(s)	2540
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	5 cut(s)	345, 785, 1129, 1413, 1664
Mox20I	TGGCCA	1 cut(s)	2540
Mph1103I	ATGCAT	2 cut(s)	2011, 2155
MroXI	GAANNNNTTC	3 cut(s)	217, 990, 2373
MscI	TGGCCA	1 cut(s)	2540
MseI	TTAA	8 cut(s)	372, 459, 609, 1664, 1995, 2004, 2013, 2396
MslI	CAYNNNNRTG	1 cut(s)	980
Msp20I	TGGCCA	1 cut(s)	2540
MspI	CCGG	3 cut(s)	112, 124, 1575
MspR9I	CCNGG	4 cut(s)	125, 357, 1512, 2216
Mva1269I	GAATGC	1 cut(s)	2426
MvaI	CCWGG	3 cut(s)	357, 1512, 2216
MvnI	CGCG	2 cut(s)	191, 412
NciI	CCSGG	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	1881
NdeI	CATATG	1 cut(s)	848
NdeII	GATC	3 cut(s)	1357, 1783, 1885
NheI	GCTAGC	1 cut(s)	1537
NlaIII	CATG	6 cut(s)	1207, 1262, 1505, 1885, 2349, 2387
NlaIV	GGNNCC	3 cut(s)	23, 1951, 2220
NmeAIII	GCCGAG	1 cut(s)	2394
NmuCI	GTSAC	3 cut(s)	319, 349, 2489
NsiI	ATGCAT	2 cut(s)	2011, 2155
PagI	TCATGA	1 cut(s)	1258
PctI	GAATGC	1 cut(s)	2426
PdmI	GAANNNNTTC	3 cut(s)	217, 990, 2373
PfoI	TCCNGGA	1 cut(s)	1510
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Ppu21I	YACGTR	2 cut(s)	653, 1336
PpuMI	RGGWCCY	1 cut(s)	22
PshBI	ATTAAT	1 cut(s)	2004
PsiI	TTATAA	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	1258
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	3 cut(s)	355, 1510, 2214
PspGI	CCWGG	3 cut(s)	355, 1510, 2214
PspN4I	GGNNCC	3 cut(s)	23, 1951, 2220
PspPI	GGNCC	5 cut(s)	22, 126, 420, 751, 1949
PspPPI	RGGWCCY	1 cut(s)	22
PstI	CTGCAG	2 cut(s)	30, 138
PsuI	RGATCY	1 cut(s)	1885
RsaI	GTAC	3 cut(s)	885, 1496, 2356
RsaNI	GTAC	3 cut(s)	884, 1495, 2355
RseI	CAYNNNNRTG	1 cut(s)	980
SacI	GAGCTC	1 cut(s)	1258
SaqAI	TTAA	8 cut(s)	372, 459, 609, 1664, 1995, 2004, 2013, 2396
Sau3AI	GATC	3 cut(s)	1357, 1783, 1885
Sau96I	GGNCC	5 cut(s)	22, 126, 420, 751, 1949
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	4 cut(s)	125, 357, 1512, 2216
SduI	GDGCHC	4 cut(s)	1258, 1335, 1674, 2080
SfaNI	GCATC	8 cut(s)	547, 1233, 1331, 1561, 1634, 2056, 2140, 2162
SfcI	CTRYAG	4 cut(s)	26, 134, 1642, 2025
SinI	GGWCC	2 cut(s)	22, 751
SmiMI	CAYNNNNRTG	1 cut(s)	980
SspMI	CTAG	4 cut(s)	417, 1238, 1538, 2132
SstI	GAGCTC	1 cut(s)	1258
StyD4I	CCNGG	4 cut(s)	123, 355, 1510, 2214
StyI	CCWWGG	2 cut(s)	1881, 2531
TaaI	ACNGT	5 cut(s)	403, 1127, 1595, 2292, 2341
TaiI	ACGT	6 cut(s)	537, 655, 889, 1338, 1489, 2074
TaqI	TCGA	7 cut(s)	425, 997, 1191, 1252, 1782, 1985, 2119
TaqII	GACCGA	1 cut(s)	338
TatI	WGTACW	1 cut(s)	1494
TauI	GCSGC	2 cut(s)	73, 1992
Tru1I	TTAA	8 cut(s)	372, 459, 609, 1664, 1995, 2004, 2013, 2396
Tru9I	TTAA	8 cut(s)	372, 459, 609, 1664, 1995, 2004, 2013, 2396
TscAI	CASTG	3 cut(s)	471, 690, 2085
TseFI	GTSAC	3 cut(s)	319, 349, 2489
TseI	GCWGC	8 cut(s)	133, 830, 1268, 1376, 2051, 2099, 2195, 2473
Tsp45I	GTSAC	3 cut(s)	319, 349, 2489
TspRI	CASTG	3 cut(s)	471, 690, 2085
VneI	GTGCAC	1 cut(s)	2076
VpaK11BI	GGWCC	2 cut(s)	22, 751
VspI	ATTAAT	1 cut(s)	2004
XapI	RAATTY	3 cut(s)	333, 948, 1273
XmiI	GTMKAC	1 cut(s)	1234
XmnI	GAANNNNTTC	3 cut(s)	217, 990, 2373
XspI	CTAG	4 cut(s)	417, 1238, 1538, 2132
Zsp2I	ATGCAT	2 cut(s)	2011, 2155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.