Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0011252

Physical Location & Seq

Genomic Coordinates Reverse (-)

34577167 .. 34583891

Gene Structure 6725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2544 bp

ATGGCGGAGGCTGCAAAGAGAGACCTCCAAACACCCAAGAGATCCTCAAAGTCCCGATCCGATCCCAAATCCTCATCGCCTTCTCTCCCTCCTCCTCCTACTCCGCTCTCCGCCACTCCTCGCCGATCCACGCGCCGCACCTCCCTACACTTCGATGCCCTCCCTCCCCCTCCTCCGACGACTACACTAGTCGAAGATCCGGCAAAGAAACCAAAGAGGAAGAGGAAAACCCCCAAATCTGGAGCCGACAATTCGACGATTGACCATGTCAACACCCCCAAATCTGCTGCCCAAGGCAAGAAATCGAAGCAAGAGGAGGAGGAAAAGTTGACTACAGTTGAAGCCGAGTTCGCGCCGGTGTCGCCGGAGCGGTCCGAGAAGAAGAAAAGGAAGAGAGGCCATGAGAGGAAGGTGGTTACAACGCGCGGTGGTGTGGCTAGCAAGAAGAGGCAGGTGTTTTACAAGAAGGTTGTGTATGACGGGGGTGAGTTTGAGGTTGGTGATGATGTGTATGTGAAGAGGAGAGAGGATGCGAGCTCCGACGAGGAAGCGGTTCAGGTGGAGCAATGTAGGGTTTGCTTCAAGTCTGGGAAGGCTGTGATGATTGAGTGCGATGATTGTTTGGGTGGGTTCCATTTGAAATGCTTGAAGCCTCCCTTGAAGGAGGTTCCTGAAGGAGACTGGGTGTGCGGTTTTTGTGAGGCTCGCAAATTGGGGAAAGAGGTCCAGCTTCCTACTCCCCCTCAAGGGAAGAAATTACGTAGGACATTTCGAGAGAAGCTTCTCTCAAGCGATTTGTGGGCTGCCCGCATTGAAAGTATATGGAAAGAAGTTGACGGTAGCTATTGGTGTCGTGTGCGTTGGTATGTTATCCCGGAAGAGACTGCTGCCGGAAGACAAGCTCATAATCTGAGGAGGGAGATTTATCGCACAAATGATTTTGCCAACATTGAGATGGAATCTATTCTTCAACATTGTTTTGTGATGAACCCTAAAGAATATGCCAAAGCCAATGAAGGGGATGATGTCTTCTTATGCGAATATGAATATGATATTCACTGGTACAGTTTCAAGCGTCTTGCAGAAATTGACGATGATGAAAAGGATGATGATGATGATGCTGAGAGTGATGAAGATTGGAAATGTGGCAAAGACTCAGACTCTGATACAGAAGAAGATGTTGAGTTTGAAGAAGAGAGCACAAAGAATATACTGGCTAAACCATCTCGAGCTCATGAGTTGGCTGCAAATTCACATAAGGGGCGGTTCTTTGGACTTCAAAAGATTGGAATGAAGAAAATCCCCGAGCATGTTAGATGCCATAAGCAGACTGCTCTTGAAAGAGCAAAATCAACACTTCTGTTGGCATCATTGCCTAAGTCTTTACCTTGCAGGGATAAAGAAATGTTGGAGATAAGTGCATTCATCAAGGGTGCCATCTCTGATGATAAATGTCTTGGACGTTGCCTCTATATTCACGGTGTTCCTGGAACTGGAAAGACTATGAGTGTACTGGCAGTAATGAGGAATTTGAGGTCTGAAGTTGATGCTGGAAGTTTAAGACCTTACTCTTTTGTGGAGATAAATGGTCTAAAGTTGGCAGCACCTGAGAATATCTACAGGCTTATGTTTGCACAGGTTATATATGAAGCGTTAAGTGGGCATCGAGTTGGTTGGAAAAAGGCTCTCCACTTGCTAAATGAGCGATTTTCTGATGGAAAGAAATTCGGCAAAGAGGATGACAAACCTTGTATTCTTCTTATTGATGAACTTGATCTTCTTGTGACCAGAAACCAATCGGTTCTCTATAACATTCTTGACTGGCCTACTAAGCCACACTCAAAATTAGTTGTAATAGGCATAGCAAATACCATGGATCTTCCGGAAAAGTTGCTTCCGCGTATTTCAAGTCGAATGGGAATCCAAAGGCTTTGCTTTGGCCCCTATAATTACCAGCAGCTTCAAGAGATCATTTCGAGTCGGCTTAGAGGAATTGATGCATTTGAAAAACAAGCTATAGAGTTCGCTTCAAGAAAGGTAGCAGCTATTTCAGGAGATGCTCGTCGTGCATTGGAAATATGCAGGCGTGCAGCTGAAATCAAAGATTACCGCATAAAGAAGCTAATTTCAACTCCCAACAATGCTTCCAAAGAAAAAGCACTTGTTGGTATGGCAGAGGTTGAAGCAGCCATACAAGAAATGTTCCAGGCACCTCATATCCAGGTGATGAAAACTTGTTCCAAACTGGGTAAAATCTATTTGACTGCTATGGTGTATGAACTCTATAAAACAGGAATGGGTGAAACTACTTTCGAAAAGTTGGCAATGACTGTTTATAATCTGTGTACAAGCAATGGAGAAGCATTTCCTGGACATGATACGCTGTTAAAAGTCGGTTGTAAGCTTGGTGAATGCAGAATTATTCTATGTGAATCAGGAGCAAAGCACAGATTGCAGAAGTTACAGCTCAACTTTCCAAGTGACGATGTAGCATTTGCACTGAAGGAAAGCAAGGAACTACCTTGGTTGGCCAAGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

847

Amino Acids

95.79

Weight (kDa)

8.75

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	190 - 233	3.2e-08	PHD-finger
BAH	PF01426	269 - 358	2.6e-11	BAH domain
AAA_16	PF13191	462 - 611	1.6e-07	AAA ATPase domain
AAA_22	PF13401	488 - 619	9.3e-07	AAA domain
AAA	PF00004	491 - 641	5.2e-17	ATPase family associated with various cellular activities (AAA)
Cdc6-ORC-like_ATPase_lid	PF22606	649 - 701	3.4e-08	Cdc6/ORC-like, ATPase lid domain
AAA_lid_10	PF17872	669 - 703	3.3e-10	AAA lid domain
WHD_Cdc6	PF09079	742 - 833	5.6e-08	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12620 AT4G14700
fragaria_vesca	FvH4_7g17041
malus_domestica	MD03G1176600.v1.1 MD11G1197200.v1.1
prunus_persica	Prupe.4G246200_v2.0.a1 Prupe.5G048200_v2.0.a1 Prupe.5G048200_v2.0.a1
pyrus_communis	pycom03g13390
rosa_chinensis	RchiOBHm_Chr3g0490671
rosa_laevigata	RLG00000022877
rosa_multiflora	Rmu_sc0006380.1_g000017 Rmu_sc0012075.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393320
rosa_rugosa	Rorug03G0245400
rosa_samantha	Rh3AG294600 Rh3BG330800 Rh3CG328300 Rh3DG327700
rosa_wichuraiana	Rw3G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2337
AarI	CACCTGC	1 cut(s)	442
Acc36I	ACCTGC	1 cut(s)	442
AccB1I	GGYRCC	2 cut(s)	1433, 2209
AccBSI	CCGCTC	2 cut(s)	106, 370
AccII	CGCG	5 cut(s)	133, 353, 424, 426, 1900
AccIII	TCCGGA	1 cut(s)	1882
AclWI	GGATC	6 cut(s)	36, 51, 56, 120, 191, 1884
AcoI	YGGCCR	1 cut(s)	2529
AcsI	RAATTY	3 cut(s)	1249, 1528, 1724
AcuI	CTGAAG	3 cut(s)	693, 1560, 2522
AfaI	GTAC	3 cut(s)	1064, 1512, 2347
AfiI	CCNNNNNNNGG	5 cut(s)	239, 746, 747, 1017, 1493
AhlI	ACTAGT	1 cut(s)	187
AjnI	CCWGG	4 cut(s)	1486, 2205, 2220, 2368
Alw21I	GWGCWC	3 cut(s)	539, 1202, 1234
Alw26I	GTCTC	3 cut(s)	15, 672, 875
AlwI	GGATC	6 cut(s)	36, 51, 56, 120, 191, 1884
AlwNI	CAGNNNCTG	2 cut(s)	1163, 1607
Ama87I	CYCGRG	2 cut(s)	1227, 1304
Aor13HI	TCCGGA	1 cut(s)	1882
AoxI	GGCC	4 cut(s)	397, 1823, 1939, 2529
ApoI	RAATTY	3 cut(s)	1249, 1528, 1724
Asp700I	GAANNNNTTC	3 cut(s)	552, 963, 2364
AspLEI	GCGC	3 cut(s)	135, 355, 426
AspS9I	GGNCC	3 cut(s)	372, 724, 1940
AsuC2I	CCSGG	1 cut(s)	875
AsuHPI	GGTGA	5 cut(s)	497, 512, 2236, 2312, 2420
AsuII	TTCGAA	1 cut(s)	2313
AsuNHI	GCTAGC	1 cut(s)	437
AvaI	CYCGRG	2 cut(s)	1227, 1304
AvaII	GGWCC	2 cut(s)	372, 724
BalI	TGGCCA	1 cut(s)	2531
BanI	GGYRCC	2 cut(s)	1433, 2209
BanII	GRGCYC	2 cut(s)	539, 1234
BarI	GAAGNNNNNNTAC	2 cut(s)	2175, 2207
BbsI	GAAGAC	2 cut(s)	901, 1021
Bbv12I	GWGCWC	3 cut(s)	539, 1202, 1234
BbvI	GCAGC	9 cut(s)	274, 790, 874, 1231, 1613, 1969, 2054, 2102, 2198
BccI	CCATC	4 cut(s)	949, 1231, 1445, 1709
BciT130I	CCWGG	4 cut(s)	1488, 2207, 2222, 2370
BcnI	CCSGG	1 cut(s)	875
BcoDI	GTCTC	3 cut(s)	15, 672, 875
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	2 cut(s)	188, 438
BfmI	CTRYAG	3 cut(s)	333, 1618, 2016
BfuAI	ACCTGC	1 cut(s)	442
Bme1390I	CCNGG	5 cut(s)	875, 1488, 2207, 2222, 2370
Bme18I	GGWCC	2 cut(s)	372, 724
BmeT110I	CYCGRG	2 cut(s)	1227, 1304
BmgT120I	GGNCC	3 cut(s)	372, 724, 1940
BmiI	GGNNCC	6 cut(s)	244, 632, 669, 1435, 1942, 2211
BmrFI	CCNGG	5 cut(s)	875, 1488, 2207, 2222, 2370
BmrI	ACTGGG	2 cut(s)	691, 2255
BmsI	GCATC	9 cut(s)	145, 520, 1108, 1307, 1376, 1537, 1672, 1987, 2047
BmtI	GCTAGC	1 cut(s)	441
BmuI	ACTGGG	2 cut(s)	691, 2255
BpiI	GAAGAC	2 cut(s)	901, 1021
BpmI	CTGGAG	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	2313
BpuEI	CTTGAG	2 cut(s)	729, 772
BpuMI	CCSGG	1 cut(s)	875
BsaAI	YACGTR	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	292, 1872, 2522
BsaWI	WCCGGW	1 cut(s)	1882
BsaXI	ACNNNNNCTCC	4 cut(s)	311, 341, 669, 699
Bsc4I	CCNNNNNNNGG	5 cut(s)	239, 746, 747, 1017, 1493
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	7 cut(s)	686, 1064, 1218, 1498, 1518, 1826, 2250
Bse3DI	GCAATG	4 cut(s)	572, 1370, 2331, 2359
BseAI	TCCGGA	1 cut(s)	1882
BseBI	CCWGG	4 cut(s)	1488, 2207, 2222, 2370
BseDI	CCNNGG	3 cut(s)	292, 1872, 2522
BseGI	GGATG	4 cut(s)	535, 1027, 1111, 1744
BseLI	CCNNNNNNNGG	5 cut(s)	239, 746, 747, 1017, 1493
BseMI	GCAATG	4 cut(s)	572, 1370, 2331, 2359
BseMII	CTCAG	4 cut(s)	902, 1113, 1170, 1599
BseNI	ACTGG	7 cut(s)	686, 1064, 1218, 1498, 1518, 1826, 2250
BseRI	GAGGAG	8 cut(s)	81, 84, 108, 162, 329, 332, 535, 928
BseXI	GCAGC	9 cut(s)	274, 790, 874, 1231, 1613, 1969, 2054, 2102, 2198
BsgI	GTGCAG	1 cut(s)	2109
Bsh1236I	CGCG	5 cut(s)	133, 353, 424, 426, 1900
BshFI	GGCC	4 cut(s)	399, 1825, 1941, 2531
BshNI	GGYRCC	2 cut(s)	1433, 2209
BsiHKAI	GWGCWC	3 cut(s)	539, 1202, 1234
BsiHKCI	CYCGRG	2 cut(s)	1227, 1304
BsiSI	CCGG	6 cut(s)	200, 356, 365, 875, 891, 1883
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	5 cut(s)	239, 746, 747, 1017, 1493
BsmAI	GTCTC	3 cut(s)	15, 672, 875
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	2 cut(s)	1421, 2417
BsnI	GGCC	4 cut(s)	399, 1825, 1941, 2531
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	2 cut(s)	1227, 1304
Bsp119I	TTCGAA	1 cut(s)	2313
Bsp1286I	GDGCHC	3 cut(s)	539, 1202, 1234
Bsp13I	TCCGGA	1 cut(s)	1882
Bsp1407I	TGTACA	1 cut(s)	2345
Bsp143I	GATC	8 cut(s)	41, 56, 61, 125, 196, 1774, 1876, 1968
Bsp19I	CCATGG	1 cut(s)	1872
BspANI	GGCC	4 cut(s)	399, 1825, 1941, 2531
BspCNI	CTCAG	4 cut(s)	903, 1114, 1169, 1600
BspEI	TCCGGA	1 cut(s)	1882
BspFNI	CGCG	5 cut(s)	133, 353, 424, 426, 1900
BspHI	TCATGA	1 cut(s)	1234
BspLI	GGNNCC	6 cut(s)	244, 632, 669, 1435, 1942, 2211
BspMI	ACCTGC	1 cut(s)	442
BspOI	GCTAGC	1 cut(s)	441
BspPI	GGATC	6 cut(s)	36, 51, 56, 120, 191, 1884
BspT104I	TTCGAA	1 cut(s)	2313
BspT107I	GGYRCC	2 cut(s)	1433, 2209
BspTNI	GGTCTC	1 cut(s)	15
BsrBI	CCGCTC	2 cut(s)	106, 370
BsrDI	GCAATG	4 cut(s)	572, 1370, 2331, 2359
BsrFI	RCCGGY	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	2345
BsrI	ACTGG	7 cut(s)	686, 1064, 1218, 1498, 1518, 1826, 2250
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	3 cut(s)	292, 1872, 2522
BssMI	GATC	8 cut(s)	41, 56, 61, 125, 196, 1774, 1876, 1968
BssT1I	CCWWGG	3 cut(s)	292, 1872, 2522
Bst2UI	CCWGG	4 cut(s)	1488, 2207, 2222, 2370
Bst4CI	ACNGT	5 cut(s)	337, 839, 1067, 1481, 2332
Bst6I	CTCTTC	6 cut(s)	215, 386, 440, 512, 873, 1188
BstAPI	GCANNNNNTGC	1 cut(s)	2452
BstAUI	TGTACA	1 cut(s)	2345
BstBAI	YACGTR	1 cut(s)	761
BstBI	TTCGAA	1 cut(s)	2313
BstC8I	GCNNGC	6 cut(s)	439, 535, 706, 808, 2084, 2088
BstDEI	CTNAG	7 cut(s)	911, 1122, 1156, 1377, 1608, 1830, 1985
BstDSI	CCRYGG	1 cut(s)	1872
BstF5I	GGATG	4 cut(s)	535, 1027, 1111, 1744
BstFNI	CGCG	5 cut(s)	133, 353, 424, 426, 1900
BstHHI	GCGC	3 cut(s)	135, 355, 426
BstKTI	GATC	8 cut(s)	44, 59, 64, 128, 199, 1777, 1879, 1971
BstMAI	GTCTC	3 cut(s)	15, 672, 875
BstMBI	GATC	8 cut(s)	41, 56, 61, 125, 196, 1774, 1876, 1968
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 350, 361, 1702, 1831, 2066, 2452
BstNI	CCWGG	4 cut(s)	1488, 2207, 2222, 2370
BstNSI	RCATGY	1 cut(s)	1313
BstSCI	CCNGG	5 cut(s)	873, 1486, 2205, 2220, 2368
BstSFI	CTRYAG	3 cut(s)	333, 1618, 2016
BstSNI	TACGTA	1 cut(s)	761
BstUI	CGCG	5 cut(s)	133, 353, 424, 426, 1900
BstV1I	GCAGC	9 cut(s)	274, 790, 874, 1231, 1613, 1969, 2054, 2102, 2198
BstV2I	GAAGAC	2 cut(s)	901, 1021
BstX2I	RGATCY	3 cut(s)	41, 196, 1876
BstYI	RGATCY	3 cut(s)	41, 196, 1876
BsuRI	GGCC	4 cut(s)	399, 1825, 1941, 2531
BtgI	CCRYGG	1 cut(s)	1872
BtgZI	GCGATG	2 cut(s)	60, 627
BtsCI	GGATG	4 cut(s)	535, 1027, 1111, 1744
BtsIMutI	CAGTG	2 cut(s)	1057, 2498
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	6 cut(s)	439, 535, 706, 808, 2084, 2088
CaiI	CAGNNNCTG	2 cut(s)	1163, 1607
CciI	TCATGA	1 cut(s)	1234
CfoI	GCGC	3 cut(s)	135, 355, 426
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	3 cut(s)	372, 724, 1940
CpoI	CGGWCCG	1 cut(s)	372
CseI	GACGC	1 cut(s)	1064
Csp6I	GTAC	3 cut(s)	1063, 1511, 2346
CspI	CGGWCCG	1 cut(s)	372
CviAII	CATG	6 cut(s)	266, 401, 1235, 1310, 1873, 2375
CviQI	GTAC	3 cut(s)	1063, 1511, 2346
DdeI	CTNAG	7 cut(s)	911, 1122, 1156, 1377, 1608, 1830, 1985
DpnI	GATC	8 cut(s)	43, 58, 63, 127, 198, 1776, 1878, 1970
DpnII	GATC	8 cut(s)	41, 56, 61, 125, 196, 1774, 1876, 1968
EaeI	YGGCCR	1 cut(s)	2529
Eam1104I	CTCTTC	6 cut(s)	215, 386, 440, 512, 873, 1188
EarI	CTCTTC	6 cut(s)	215, 386, 440, 512, 873, 1188
EciI	GGCGGA	2 cut(s)	20, 100
Ecl136II	GAGCTC	2 cut(s)	537, 1232
Eco105I	TACGTA	1 cut(s)	761
Eco130I	CCWWGG	3 cut(s)	292, 1872, 2522
Eco24I	GRGCYC	2 cut(s)	539, 1234
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	372, 724
Eco53kI	GAGCTC	2 cut(s)	537, 1232
Eco57I	CTGAAG	3 cut(s)	693, 1560, 2522
Eco88I	CYCGRG	2 cut(s)	1227, 1304
EcoICRI	GAGCTC	2 cut(s)	537, 1232
EcoRII	CCWGG	4 cut(s)	1486, 2205, 2220, 2368
EcoT14I	CCWWGG	3 cut(s)	292, 1872, 2522
EcoT22I	ATGCAT	1 cut(s)	2002
EcoT38I	GRGCYC	2 cut(s)	539, 1234
ErhI	CCWWGG	3 cut(s)	292, 1872, 2522
FaeI	CATG	6 cut(s)	269, 404, 1238, 1313, 1876, 2378
FalI	AAGNNNNNCTT	2 cut(s)	641, 673
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	6 cut(s)	265, 400, 1234, 1309, 1872, 2374
FauI	CCCGC	1 cut(s)	815
FokI	GGATG	4 cut(s)	542, 1034, 1118, 1751
FriOI	GRGCYC	2 cut(s)	539, 1234
FspBI	CTAG	2 cut(s)	188, 438
GlaI	GCGC	3 cut(s)	134, 354, 425
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	4 cut(s)	399, 1825, 1941, 2531
HapII	CCGG	6 cut(s)	200, 356, 365, 875, 891, 1883
HgaI	GACGC	1 cut(s)	1064
HhaI	GCGC	3 cut(s)	135, 355, 426
Hin1II	CATG	6 cut(s)	269, 404, 1238, 1313, 1876, 2378
Hin6I	GCGC	3 cut(s)	133, 353, 424
HinP1I	GCGC	3 cut(s)	133, 353, 424
HincII	GTYRAC	3 cut(s)	271, 330, 835
HindII	GTYRAC	3 cut(s)	271, 330, 835
HindIII	AAGCTT	2 cut(s)	779, 2402
HinfI	GANTC	6 cut(s)	959, 1154, 1160, 1920, 1978, 2432
HpaII	CCGG	6 cut(s)	200, 356, 365, 875, 891, 1883
HphI	GGTGA	5 cut(s)	497, 512, 2236, 2312, 2420
Hpy166II	GTNNAC	5 cut(s)	271, 330, 835, 1511, 2346
Hpy8I	GTNNAC	5 cut(s)	271, 330, 835, 1511, 2346
Hpy99I	CGWCG	4 cut(s)	181, 259, 545, 2067
HpyAV	CCTTC	8 cut(s)	90, 403, 460, 586, 655, 668, 1010, 2497
HpyCH4III	ACNGT	5 cut(s)	337, 839, 1067, 1481, 2332
HpyCH4IV	ACGT	2 cut(s)	760, 1462
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 350, 361, 1702, 1831, 2066, 2452
HpyF3I	CTNAG	7 cut(s)	911, 1122, 1156, 1377, 1608, 1830, 1985
HpySE526I	ACGT	2 cut(s)	760, 1462
Hsp92II	CATG	6 cut(s)	269, 404, 1238, 1313, 1876, 2378
HspAI	GCGC	3 cut(s)	133, 353, 424
Kpn2I	TCCGGA	1 cut(s)	1882
Kzo9I	GATC	8 cut(s)	41, 56, 61, 125, 196, 1774, 1876, 1968
LmnI	GCTCC	5 cut(s)	242, 367, 542, 562, 2438
Lsp1109I	GCAGC	9 cut(s)	274, 790, 874, 1231, 1613, 1969, 2054, 2102, 2198
LweI	GCATC	9 cut(s)	145, 520, 1108, 1307, 1376, 1537, 1672, 1987, 2047
MaeI	CTAG	2 cut(s)	188, 438
MaeII	ACGT	2 cut(s)	760, 1462
MaeIII	GTNAC	4 cut(s)	415, 1783, 2460, 2480
MalI	GATC	8 cut(s)	43, 58, 63, 127, 198, 1776, 1878, 1970
MbiI	CCGCTC	2 cut(s)	106, 370
MboI	GATC	8 cut(s)	41, 56, 61, 125, 196, 1774, 1876, 1968
MflI	RGATCY	3 cut(s)	41, 196, 1876
MhlI	GDGCHC	3 cut(s)	539, 1202, 1234
MlsI	TGGCCA	1 cut(s)	2531
MluNI	TGGCCA	1 cut(s)	2531
MlyI	GAGTC	3 cut(s)	1148, 1154, 1987
MmeI	TCCRAC	4 cut(s)	200, 564, 1389, 1655
Mox20I	TGGCCA	1 cut(s)	2531
Mph1103I	ATGCAT	1 cut(s)	2002
MroI	TCCGGA	1 cut(s)	1882
MroXI	GAANNNNTTC	3 cut(s)	552, 963, 2364
MscI	TGGCCA	1 cut(s)	2531
MseI	TTAA	3 cut(s)	1559, 1655, 2387
MslI	CAYNNNNRTG	2 cut(s)	153, 953
Msp20I	TGGCCA	1 cut(s)	2531
MspA1I	CMGCKG	1 cut(s)	2093
MspI	CCGG	6 cut(s)	200, 356, 365, 875, 891, 1883
MspR9I	CCNGG	5 cut(s)	875, 1488, 2207, 2222, 2370
Mva1269I	GAATGC	2 cut(s)	1421, 2417
MvaI	CCWGG	4 cut(s)	1488, 2207, 2222, 2370
MvnI	CGCG	5 cut(s)	133, 353, 424, 426, 1900
MwoI	GCNNNNNNNGC	7 cut(s)	11, 350, 361, 1702, 1831, 2066, 2452
NciI	CCSGG	1 cut(s)	875
NcoI	CCATGG	1 cut(s)	1872
NdeII	GATC	8 cut(s)	41, 56, 61, 125, 196, 1774, 1876, 1968
NheI	GCTAGC	1 cut(s)	437
NlaIII	CATG	6 cut(s)	269, 404, 1238, 1313, 1876, 2378
NlaIV	GGNNCC	6 cut(s)	244, 632, 669, 1435, 1942, 2211
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	1783, 2480
NsiI	ATGCAT	1 cut(s)	2002
NspI	RCATGY	1 cut(s)	1313
NspV	TTCGAA	1 cut(s)	2313
PaeR7I	CTCGAG	1 cut(s)	1227
PagI	TCATGA	1 cut(s)	1234
PaqCI	CACCTGC	1 cut(s)	442
PctI	GAATGC	2 cut(s)	1421, 2417
PdmI	GAANNNNTTC	3 cut(s)	552, 963, 2364
PfeI	GAWTC	3 cut(s)	959, 1920, 2432
PflFI	GACNNNGTC	1 cut(s)	266
PfoI	TCCNGGA	3 cut(s)	873, 1486, 2368
PleI	GAGTC	3 cut(s)	1148, 1154, 1986
PpsI	GAGTC	3 cut(s)	1148, 1154, 1986
Ppu21I	YACGTR	1 cut(s)	761
PsiI	TTATAA	1 cut(s)	2337
Psp124BI	GAGCTC	2 cut(s)	539, 1234
Psp6I	CCWGG	4 cut(s)	1486, 2205, 2220, 2368
PspGI	CCWGG	4 cut(s)	1486, 2205, 2220, 2368
PspN4I	GGNNCC	6 cut(s)	244, 632, 669, 1435, 1942, 2211
PspPI	GGNCC	3 cut(s)	372, 724, 1940
PstNI	CAGNNNCTG	2 cut(s)	1163, 1607
PsuI	RGATCY	3 cut(s)	41, 196, 1876
PsyI	GACNNNGTC	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	2093
RsaI	GTAC	3 cut(s)	1064, 1512, 2347
RsaNI	GTAC	3 cut(s)	1063, 1511, 2346
RseI	CAYNNNNRTG	2 cut(s)	153, 953
Rsr2I	CGGWCCG	1 cut(s)	372
RsrII	CGGWCCG	1 cut(s)	372
SacI	GAGCTC	2 cut(s)	539, 1234
SaqAI	TTAA	3 cut(s)	1559, 1655, 2387
Sau3AI	GATC	8 cut(s)	41, 56, 61, 125, 196, 1774, 1876, 1968
Sau96I	GGNCC	3 cut(s)	372, 724, 1940
SchI	GAGTC	3 cut(s)	1148, 1154, 1987
ScrFI	CCNGG	5 cut(s)	875, 1488, 2207, 2222, 2370
SduI	GDGCHC	3 cut(s)	539, 1202, 1234
SfaNI	GCATC	9 cut(s)	145, 520, 1108, 1307, 1376, 1537, 1672, 1987, 2047
SfcI	CTRYAG	3 cut(s)	333, 1618, 2016
Sfr274I	CTCGAG	1 cut(s)	1227
SfuI	TTCGAA	1 cut(s)	2313
SgrAI	CRCCGGYG	1 cut(s)	355
SinI	GGWCC	2 cut(s)	372, 724
SlaI	CTCGAG	1 cut(s)	1227
SmiMI	CAYNNNNRTG	2 cut(s)	153, 953
SmlI	CTYRAG	3 cut(s)	744, 787, 1227
SmoI	CTYRAG	3 cut(s)	744, 787, 1227
SnaBI	TACGTA	1 cut(s)	761
SpeI	ACTAGT	1 cut(s)	187
SspMI	CTAG	2 cut(s)	188, 438
SstI	GAGCTC	2 cut(s)	539, 1234
StyD4I	CCNGG	5 cut(s)	873, 1486, 2205, 2220, 2368
StyI	CCWWGG	3 cut(s)	292, 1872, 2522
TaaI	ACNGT	5 cut(s)	337, 839, 1067, 1481, 2332
TaiI	ACGT	2 cut(s)	763, 1465
TatI	WGTACW	2 cut(s)	1510, 2345
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	3 cut(s)	959, 1920, 2432
Tru1I	TTAA	3 cut(s)	1559, 1655, 2387
Tru9I	TTAA	3 cut(s)	1559, 1655, 2387
TscAI	CASTG	2 cut(s)	1064, 2505
TseFI	GTSAC	2 cut(s)	1783, 2480
Tsp45I	GTSAC	2 cut(s)	1783, 2480
TspRI	CASTG	2 cut(s)	1064, 2505
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	372, 724
XapI	RAATTY	3 cut(s)	1249, 1528, 1724
XceI	RCATGY	1 cut(s)	1313
XcmI	CCANNNNNNNNNTGG	1 cut(s)	952
XhoI	CTCGAG	1 cut(s)	1227
XmnI	GAANNNNTTC	3 cut(s)	552, 963, 2364
XspI	CTAG	2 cut(s)	188, 438
Zsp2I	ATGCAT	1 cut(s)	2002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.