Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011252

Physical Location & Seq

Genomic Coordinates Reverse (-)

35956655 .. 35963757

Gene Structure 7103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG327700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2532 bp

ATGGCGGAGGCTGCAAAGAGAGACCTCCAAACACCCAAGAGATCCTCCAAGTCCCGATCGGATCCCAAATCATCATCGCCTTCTCTCCCTCCTCCTCCTACTCCTCTCTCCGCCACTCCTCGCCGATCCACGCGCCGCACCTCCCTACACTTCGATGCCCTCCCTCCTCCTCCTCCTCCTCCGACTACACTAGCCGAAGATCCGGCAAAGAAACCAAAGAAGAAGAGGAAAACCCCCAAATCTGGAGCCGACAATTCGACGATTGACCATGTCAACACCCCCAAATCTGCTGCCCAAGGCAAGAAATCGAAGCCAGAGGAGGAGGAAAAGTTGACTACAGTTGAAGCCGAGTTCTCGCCGGTGTCGCCGGAGCGATCCGAGAAGAAGAAAAGGAAGAGAGGCCATGAGAGGAAGGTGGTTACAACGCGCGGTGGTGTGGCTAGCAAGAAGAGGCAGGTGTTTTACAAGAAGGTTGTGTATGACGGGGGTGAGTTTGAGGTTGGTGATGATGTGTATGTGAAAAGGAGAGAGGATGCGAGCTCCGACGAGGAAGTGGTTCAGGTGGAGCAATGTAGGGTTTGCTTCAAGTCTGGGAAGGCTGTGATGATTGAGTGCGATGATTGTTTGGGTGGGTTCCATTTGAAATGCTTGAAGCCTCCCTTGAAGGAGGTTCCTGAAGGAGATTGGGTGTGCGGTTTTTGTGAGGCTCGCAAATTGGGGAAAGAGGTCCAGCTTCCTACTCCCCCTCAAGGGAAGAAATTGCGTAGGACATTTCGAGAGAAGCTTCTCTCAAGCGATTTGTGGGCTGCCCGCATTGAAAGTATATGGAAAGAAGTTGACGGTAGCTATTGGTGTCGTGTGCGTTGGTATGTTATCCCGGAAGAGACTGCTGCCGGAAGACAAGCTCATAATCTGAGGAGGGAGATTTATCGCACAAATGATTTTGCCAACATTGAGATGGAATCTATTCTTCAACATTGTTTTGTGATGAACCCTAAAGAATATGCCAAAGCCAATGAAGGGGATGATGTCTTCTTATGCGAATATGAATATGATATTCACTGGTACAGTTTCAAGCGTCTTGCAGAAATTGACGATGATGAAAAGGATGATGATGATGATGCTGAGAGTGATGAAGATTGGAAATGTGGCAAAGACTCAGAATCTGATACAGAAGAAGATGTTGAGTTTGAAGAAGAGAGCACAAAGAATATACTGGCTAAACCATCTCGAGCTCATGAGTTGGCTGCAAATTCACATAAGGGGCGGTTCTTTGGACTTCAAAAGATTGGAATGAAGAAAATCCCCGAGCATGTTAGATGCCATAAGCAGACTGCTCTTGAAAGAGCAAAATCAACACTTCTGTTGGCATCATTGCCTAAGTCTTTACCTTGCAGGGATAAAGAAATGTTGGAGATAAGTGCATTCATCAAGGGTGCCATCTCTGATGATAAATGTCTTGGACGTTGCCTCTATATTCACGGTGTTCCTGGAACTGGAAAGACTATGAGTGTACTGGCAGTAATGAGGAATTTGAGGTCTGAAGTTGATGCTGGAAGTTTAAGACCTTACTGTTTTGTGGAGATAAATGGTCTAAAGTTGGCAGCACCTGAGAATATCTACAGGGTTATATATGAAGCGTTAAGTGGGCATCGAGTTGGTTGGAAAAAGGCTCTCCACTTGCTAAATGAGCGATTTTCTGATGGAAAGAAATTCGGCAAAGAGGATGACAAACCTTGTATTCTTCTTATTGATGAACTTGATCTTCTTGTGACCAGAAACCAATCGGTTCTCTATAACATTCTTGACTGGCCTACTAAGCCACACTCAAAATTAGTTGTAATAGGCATAGCAAATACCATGGATCTTCCGGAAAAGTTGCTTCCGCGTATTTCAAGTCGAATGGGAATCCAAAGGCTTTGCTTTGGCCCCTATAATTACCAGCAGCTTCAAGAGATCATTTCGAGTCGGCTTAGAGGAATTGATGCATTTGAAAAACAAGCTATAGAGTTCGCTTCAAGAAAGGTAGCAGCTATTTCAGGAGATGCTCGTCGTGCATTGGAAATATGCAGGCGTGCAGCTGAAATAAAAGATTACCGCATAAAGAAGCTAATTTCAACTCCCAACAAAGCTTCTAAAGAAAAAGCACTTGTTGGTATGGCAGAGGTTGAAGCAGCCATACAAGAAATGTTCCAGGCACCTCATATCCAGGTGATGAAAACTTGTTCCAAACTGGGTAAAATCTATTTGACTGCTATGGTGTACGAACTCTATAAAACAGGAATGGGTGAAACTACTTTCGAAAAGTTGGCAATGACTGTTTATAATCTGTGTACAAGCAATGGAGAAGCATTTCCTGGACATGATACGCTGTTAAAAGTCGGTTGTAAGCTTGGTGAATGCAGAATTATTCTATGTGAATCAGGAGCAAAGCACAGATTGCAGAAGTTACAGCTCAACTTTCCAAGCGACGATGTAGCATTTGCACTGAAGGAAAGCAAGGAACTACCTTGGTTGGCCAAGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

843

Amino Acids

95.3

Weight (kDa)

8.77

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	191 - 234	3.2e-08	PHD-finger
BAH	PF01426	270 - 359	2.5e-11	BAH domain
AAA_16	PF13191	463 - 607	2.5e-07	AAA ATPase domain
AAA_22	PF13401	489 - 615	6.1e-08	AAA domain
AAA	PF00004	492 - 637	6.6e-17	ATPase family associated with various cellular activities (AAA)
Cdc6-ORC-like_ATPase_lid	PF22606	645 - 697	3.4e-08	Cdc6/ORC-like, ATPase lid domain
AAA_lid_10	PF17872	665 - 702	3.3e-10	AAA lid domain
WHD_Cdc6	PF09079	738 - 829	5.6e-08	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12620 AT4G14700
fragaria_vesca	FvH4_7g17041
malus_domestica	MD03G1176600.v1.1 MD11G1197200.v1.1
prunus_persica	Prupe.4G246200_v2.0.a1 Prupe.5G048200_v2.0.a1 Prupe.5G048200_v2.0.a1
pyrus_communis	pycom03g13390
rosa_chinensis	RchiOBHm_Chr3g0490671
rosa_laevigata	RLG00000022877
rosa_multiflora	Rmu_sc0006380.1_g000017 Rmu_sc0012075.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393320
rosa_rugosa	Rorug03G0245400
rosa_samantha	Rh3AG294600 Rh3BG330800 Rh3CG328300 Rh3DG327700
rosa_wichuraiana	Rw3G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2325
AarI	CACCTGC	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	445
AccB1I	GGYRCC	2 cut(s)	1436, 2197
AccII	CGCG	4 cut(s)	133, 427, 429, 1888
AccIII	TCCGGA	1 cut(s)	1870
AciI	CCGC	9 cut(s)	5, 111, 136, 429, 693, 811, 1267, 1886, 2098
AclWI	GGATC	7 cut(s)	36, 56, 69, 120, 194, 369, 1872
AcoI	YGGCCR	1 cut(s)	2517
AcsI	RAATTY	3 cut(s)	1252, 1531, 1712
AcuI	CTGAAG	3 cut(s)	696, 1563, 2510
AfaI	GTAC	4 cut(s)	1067, 1515, 2264, 2335
AfiI	CCNNNNNNNGG	5 cut(s)	242, 749, 750, 1020, 1496
AjnI	CCWGG	4 cut(s)	1489, 2193, 2208, 2356
Alw21I	GWGCWC	3 cut(s)	542, 1205, 1237
Alw26I	GTCTC	2 cut(s)	15, 878
AlwI	GGATC	7 cut(s)	36, 56, 69, 120, 194, 369, 1872
AlwNI	CAGNNNCTG	2 cut(s)	1166, 1610
Ama87I	CYCGRG	2 cut(s)	1230, 1307
Aor13HI	TCCGGA	1 cut(s)	1870
AoxI	GGCC	4 cut(s)	400, 1811, 1927, 2517
ApoI	RAATTY	3 cut(s)	1252, 1531, 1712
Asp700I	GAANNNNTTC	3 cut(s)	555, 966, 2352
AspLEI	GCGC	2 cut(s)	135, 429
AspS9I	GGNCC	2 cut(s)	727, 1928
AsuC2I	CCSGG	1 cut(s)	878
AsuHPI	GGTGA	5 cut(s)	500, 515, 2224, 2300, 2408
AsuII	TTCGAA	1 cut(s)	2301
AsuNHI	GCTAGC	1 cut(s)	440
AvaI	CYCGRG	2 cut(s)	1230, 1307
AvaII	GGWCC	1 cut(s)	727
BalI	TGGCCA	1 cut(s)	2519
BamHI	GGATCC	1 cut(s)	61
BanI	GGYRCC	2 cut(s)	1436, 2197
BanII	GRGCYC	2 cut(s)	542, 1237
BarI	GAAGNNNNNNTAC	2 cut(s)	2163, 2195
BbsI	GAAGAC	2 cut(s)	904, 1024
Bbv12I	GWGCWC	3 cut(s)	542, 1205, 1237
BbvI	GCAGC	9 cut(s)	277, 793, 877, 1234, 1616, 1957, 2042, 2090, 2186
BccI	CCATC	4 cut(s)	952, 1234, 1448, 1697
BciT130I	CCWGG	4 cut(s)	1491, 2195, 2210, 2358
BcnI	CCSGG	1 cut(s)	878
BcoDI	GTCTC	2 cut(s)	15, 878
BfaI	CTAG	2 cut(s)	191, 441
BfmI	CTRYAG	3 cut(s)	336, 1621, 2004
BfuAI	ACCTGC	1 cut(s)	445
Bme1390I	CCNGG	5 cut(s)	878, 1491, 2195, 2210, 2358
Bme18I	GGWCC	1 cut(s)	727
BmeT110I	CYCGRG	2 cut(s)	1230, 1307
BmgT120I	GGNCC	2 cut(s)	727, 1928
BmiI	GGNNCC	7 cut(s)	63, 247, 635, 672, 1438, 1930, 2199
BmrFI	CCNGG	5 cut(s)	878, 1491, 2195, 2210, 2358
BmrI	ACTGGG	1 cut(s)	2243
BmsI	GCATC	9 cut(s)	145, 523, 1111, 1310, 1379, 1540, 1660, 1975, 2035
BmtI	GCTAGC	1 cut(s)	444
BmuI	ACTGGG	1 cut(s)	2243
BpiI	GAAGAC	2 cut(s)	904, 1024
BpmI	CTGGAG	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	2301
BpuEI	CTTGAG	2 cut(s)	732, 775
BpuMI	CCSGG	1 cut(s)	878
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	295, 1860, 2510
BsaWI	WCCGGW	1 cut(s)	1870
BsaXI	ACNNNNNCTCC	4 cut(s)	314, 344, 672, 702
Bsc4I	CCNNNNNNNGG	5 cut(s)	242, 749, 750, 1020, 1496
Bse118I	RCCGGY	1 cut(s)	358
Bse1I	ACTGG	6 cut(s)	1067, 1221, 1501, 1521, 1814, 2238
Bse3DI	GCAATG	4 cut(s)	575, 1373, 2319, 2347
BseAI	TCCGGA	1 cut(s)	1870
BseBI	CCWGG	4 cut(s)	1491, 2195, 2210, 2358
BseDI	CCNNGG	3 cut(s)	295, 1860, 2510
BseGI	GGATG	4 cut(s)	538, 1030, 1114, 1732
BseLI	CCNNNNNNNGG	5 cut(s)	242, 749, 750, 1020, 1496
BseMI	GCAATG	4 cut(s)	575, 1373, 2319, 2347
BseMII	CTCAG	4 cut(s)	905, 1116, 1173, 1602
BseNI	ACTGG	6 cut(s)	1067, 1221, 1501, 1521, 1814, 2238
BseXI	GCAGC	9 cut(s)	277, 793, 877, 1234, 1616, 1957, 2042, 2090, 2186
BsgI	GTGCAG	1 cut(s)	2097
Bsh1236I	CGCG	4 cut(s)	133, 427, 429, 1888
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	4 cut(s)	402, 1813, 1929, 2519
BshNI	GGYRCC	2 cut(s)	1436, 2197
BsiEI	CGRYCG	1 cut(s)	59
BsiHKAI	GWGCWC	3 cut(s)	542, 1205, 1237
BsiHKCI	CYCGRG	2 cut(s)	1230, 1307
BsiSI	CCGG	6 cut(s)	203, 359, 368, 878, 894, 1871
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	5 cut(s)	242, 749, 750, 1020, 1496
BsmAI	GTCTC	2 cut(s)	15, 878
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	2 cut(s)	1424, 2405
BsnI	GGCC	4 cut(s)	402, 1813, 1929, 2519
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	2 cut(s)	1230, 1307
Bsp119I	TTCGAA	1 cut(s)	2301
Bsp1286I	GDGCHC	3 cut(s)	542, 1205, 1237
Bsp13I	TCCGGA	1 cut(s)	1870
Bsp1407I	TGTACA	1 cut(s)	2333
Bsp143I	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1762, 1864, 1956
Bsp19I	CCATGG	1 cut(s)	1860
BspACI	CCGC	9 cut(s)	5, 111, 136, 429, 693, 811, 1267, 1886, 2098
BspANI	GGCC	4 cut(s)	402, 1813, 1929, 2519
BspCNI	CTCAG	4 cut(s)	906, 1117, 1172, 1603
BspEI	TCCGGA	1 cut(s)	1870
BspFNI	CGCG	4 cut(s)	133, 427, 429, 1888
BspHI	TCATGA	1 cut(s)	1237
BspLI	GGNNCC	7 cut(s)	63, 247, 635, 672, 1438, 1930, 2199
BspMI	ACCTGC	1 cut(s)	445
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	7 cut(s)	36, 56, 69, 120, 194, 369, 1872
BspT104I	TTCGAA	1 cut(s)	2301
BspT107I	GGYRCC	2 cut(s)	1436, 2197
BspTNI	GGTCTC	1 cut(s)	15
BsrDI	GCAATG	4 cut(s)	575, 1373, 2319, 2347
BsrFI	RCCGGY	1 cut(s)	358
BsrGI	TGTACA	1 cut(s)	2333
BsrI	ACTGG	6 cut(s)	1067, 1221, 1501, 1521, 1814, 2238
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	3 cut(s)	295, 1860, 2510
BssMI	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1762, 1864, 1956
BssT1I	CCWWGG	3 cut(s)	295, 1860, 2510
Bst2UI	CCWGG	4 cut(s)	1491, 2195, 2210, 2358
Bst4CI	ACNGT	6 cut(s)	340, 842, 1070, 1484, 1574, 2320
Bst6I	CTCTTC	5 cut(s)	218, 389, 443, 876, 1191
BstAPI	GCANNNNNTGC	1 cut(s)	2440
BstAUI	TGTACA	1 cut(s)	2333
BstBI	TTCGAA	1 cut(s)	2301
BstC8I	GCNNGC	6 cut(s)	442, 538, 709, 811, 2072, 2076
BstDEI	CTNAG	7 cut(s)	914, 1125, 1159, 1380, 1611, 1818, 1973
BstDSI	CCRYGG	1 cut(s)	1860
BstF5I	GGATG	4 cut(s)	538, 1030, 1114, 1732
BstFNI	CGCG	4 cut(s)	133, 427, 429, 1888
BstHHI	GCGC	2 cut(s)	135, 429
BstKTI	GATC	9 cut(s)	44, 59, 64, 128, 202, 377, 1765, 1867, 1959
BstMAI	GTCTC	2 cut(s)	15, 878
BstMBI	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1762, 1864, 1956
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 364, 1690, 1819, 2054, 2440
BstNI	CCWGG	4 cut(s)	1491, 2195, 2210, 2358
BstNSI	RCATGY	1 cut(s)	1316
BstSCI	CCNGG	5 cut(s)	876, 1489, 2193, 2208, 2356
BstSFI	CTRYAG	3 cut(s)	336, 1621, 2004
BstUI	CGCG	4 cut(s)	133, 427, 429, 1888
BstV1I	GCAGC	9 cut(s)	277, 793, 877, 1234, 1616, 1957, 2042, 2090, 2186
BstV2I	GAAGAC	2 cut(s)	904, 1024
BstX2I	RGATCY	4 cut(s)	41, 61, 199, 1864
BstYI	RGATCY	4 cut(s)	41, 61, 199, 1864
BsuRI	GGCC	4 cut(s)	402, 1813, 1929, 2519
BtgI	CCRYGG	1 cut(s)	1860
BtgZI	GCGATG	2 cut(s)	60, 630
BtsCI	GGATG	4 cut(s)	538, 1030, 1114, 1732
BtsIMutI	CAGTG	2 cut(s)	1060, 2486
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	6 cut(s)	442, 538, 709, 811, 2072, 2076
CaiI	CAGNNNCTG	2 cut(s)	1166, 1610
CciI	TCATGA	1 cut(s)	1237
CfoI	GCGC	2 cut(s)	135, 429
Cfr10I	RCCGGY	1 cut(s)	358
Cfr13I	GGNCC	2 cut(s)	727, 1928
CseI	GACGC	1 cut(s)	1067
Csp6I	GTAC	4 cut(s)	1066, 1514, 2263, 2334
CviAII	CATG	6 cut(s)	269, 404, 1238, 1313, 1861, 2363
CviQI	GTAC	4 cut(s)	1066, 1514, 2263, 2334
DdeI	CTNAG	7 cut(s)	914, 1125, 1159, 1380, 1611, 1818, 1973
DpnI	GATC	9 cut(s)	43, 58, 63, 127, 201, 376, 1764, 1866, 1958
DpnII	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1762, 1864, 1956
EaeI	YGGCCR	1 cut(s)	2517
Eam1104I	CTCTTC	5 cut(s)	218, 389, 443, 876, 1191
EarI	CTCTTC	5 cut(s)	218, 389, 443, 876, 1191
EciI	GGCGGA	2 cut(s)	20, 100
Ecl136II	GAGCTC	2 cut(s)	540, 1235
Eco130I	CCWWGG	3 cut(s)	295, 1860, 2510
Eco24I	GRGCYC	2 cut(s)	542, 1237
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	727
Eco53kI	GAGCTC	2 cut(s)	540, 1235
Eco57I	CTGAAG	3 cut(s)	696, 1563, 2510
Eco88I	CYCGRG	2 cut(s)	1230, 1307
EcoICRI	GAGCTC	2 cut(s)	540, 1235
EcoRII	CCWGG	4 cut(s)	1489, 2193, 2208, 2356
EcoT14I	CCWWGG	3 cut(s)	295, 1860, 2510
EcoT22I	ATGCAT	1 cut(s)	1990
EcoT38I	GRGCYC	2 cut(s)	542, 1237
ErhI	CCWWGG	3 cut(s)	295, 1860, 2510
FaeI	CATG	6 cut(s)	272, 407, 1241, 1316, 1864, 2366
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	6 cut(s)	268, 403, 1237, 1312, 1860, 2362
FauI	CCCGC	1 cut(s)	818
FokI	GGATG	4 cut(s)	545, 1037, 1121, 1739
FriOI	GRGCYC	2 cut(s)	542, 1237
FspBI	CTAG	2 cut(s)	191, 441
GlaI	GCGC	2 cut(s)	134, 428
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	4 cut(s)	402, 1813, 1929, 2519
HapII	CCGG	6 cut(s)	203, 359, 368, 878, 894, 1871
HgaI	GACGC	1 cut(s)	1067
HhaI	GCGC	2 cut(s)	135, 429
Hin1II	CATG	6 cut(s)	272, 407, 1241, 1316, 1864, 2366
Hin6I	GCGC	2 cut(s)	133, 427
HinP1I	GCGC	2 cut(s)	133, 427
HincII	GTYRAC	3 cut(s)	274, 333, 838
HindII	GTYRAC	3 cut(s)	274, 333, 838
HindIII	AAGCTT	3 cut(s)	782, 2130, 2390
HinfI	GANTC	6 cut(s)	962, 1157, 1163, 1908, 1966, 2420
HpaII	CCGG	6 cut(s)	203, 359, 368, 878, 894, 1871
HphI	GGTGA	5 cut(s)	500, 515, 2224, 2300, 2408
Hpy166II	GTNNAC	6 cut(s)	274, 333, 838, 1514, 2263, 2334
Hpy8I	GTNNAC	6 cut(s)	274, 333, 838, 1514, 2263, 2334
Hpy99I	CGWCG	4 cut(s)	262, 548, 2055, 2474
HpyAV	CCTTC	8 cut(s)	90, 406, 463, 589, 658, 671, 1013, 2485
HpyCH4III	ACNGT	6 cut(s)	340, 842, 1070, 1484, 1574, 2320
HpyCH4IV	ACGT	1 cut(s)	1465
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 364, 1690, 1819, 2054, 2440
HpyF3I	CTNAG	7 cut(s)	914, 1125, 1159, 1380, 1611, 1818, 1973
HpySE526I	ACGT	1 cut(s)	1465
Hsp92II	CATG	6 cut(s)	272, 407, 1241, 1316, 1864, 2366
HspAI	GCGC	2 cut(s)	133, 427
Kpn2I	TCCGGA	1 cut(s)	1870
Kzo9I	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1762, 1864, 1956
LmnI	GCTCC	5 cut(s)	245, 370, 545, 565, 2426
Lsp1109I	GCAGC	9 cut(s)	277, 793, 877, 1234, 1616, 1957, 2042, 2090, 2186
LweI	GCATC	9 cut(s)	145, 523, 1111, 1310, 1379, 1540, 1660, 1975, 2035
MaeI	CTAG	2 cut(s)	191, 441
MaeII	ACGT	1 cut(s)	1465
MaeIII	GTNAC	3 cut(s)	418, 1771, 2448
MalI	GATC	9 cut(s)	43, 58, 63, 127, 201, 376, 1764, 1866, 1958
MboI	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1762, 1864, 1956
MflI	RGATCY	4 cut(s)	41, 61, 199, 1864
MhlI	GDGCHC	3 cut(s)	542, 1205, 1237
MlsI	TGGCCA	1 cut(s)	2519
MluNI	TGGCCA	1 cut(s)	2519
MlyI	GAGTC	2 cut(s)	1151, 1975
MmeI	TCCRAC	4 cut(s)	206, 567, 1392, 1643
Mox20I	TGGCCA	1 cut(s)	2519
Mph1103I	ATGCAT	1 cut(s)	1990
MroI	TCCGGA	1 cut(s)	1870
MroXI	GAANNNNTTC	3 cut(s)	555, 966, 2352
MscI	TGGCCA	1 cut(s)	2519
MseI	TTAA	3 cut(s)	1562, 1643, 2375
MslI	CAYNNNNRTG	2 cut(s)	153, 956
Msp20I	TGGCCA	1 cut(s)	2519
MspA1I	CMGCKG	1 cut(s)	2081
MspI	CCGG	6 cut(s)	203, 359, 368, 878, 894, 1871
MspR9I	CCNGG	5 cut(s)	878, 1491, 2195, 2210, 2358
Mva1269I	GAATGC	2 cut(s)	1424, 2405
MvaI	CCWGG	4 cut(s)	1491, 2195, 2210, 2358
MvnI	CGCG	4 cut(s)	133, 427, 429, 1888
MwoI	GCNNNNNNNGC	6 cut(s)	11, 364, 1690, 1819, 2054, 2440
NciI	CCSGG	1 cut(s)	878
NcoI	CCATGG	1 cut(s)	1860
NdeII	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1762, 1864, 1956
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	6 cut(s)	272, 407, 1241, 1316, 1864, 2366
NlaIV	GGNNCC	7 cut(s)	63, 247, 635, 672, 1438, 1930, 2199
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	1771
NsiI	ATGCAT	1 cut(s)	1990
NspI	RCATGY	1 cut(s)	1316
NspV	TTCGAA	1 cut(s)	2301
PaeR7I	CTCGAG	1 cut(s)	1230
PagI	TCATGA	1 cut(s)	1237
PaqCI	CACCTGC	1 cut(s)	445
PctI	GAATGC	2 cut(s)	1424, 2405
PdmI	GAANNNNTTC	3 cut(s)	555, 966, 2352
PfeI	GAWTC	4 cut(s)	962, 1163, 1908, 2420
PflFI	GACNNNGTC	1 cut(s)	269
PfoI	TCCNGGA	3 cut(s)	876, 1489, 2356
Ple19I	CGATCG	1 cut(s)	59
PleI	GAGTC	2 cut(s)	1151, 1974
PpsI	GAGTC	2 cut(s)	1151, 1974
PsiI	TTATAA	1 cut(s)	2325
Psp124BI	GAGCTC	2 cut(s)	542, 1237
Psp6I	CCWGG	4 cut(s)	1489, 2193, 2208, 2356
PspGI	CCWGG	4 cut(s)	1489, 2193, 2208, 2356
PspN4I	GGNNCC	7 cut(s)	63, 247, 635, 672, 1438, 1930, 2199
PspPI	GGNCC	2 cut(s)	727, 1928
PstNI	CAGNNNCTG	2 cut(s)	1166, 1610
PsuI	RGATCY	4 cut(s)	41, 61, 199, 1864
PsyI	GACNNNGTC	1 cut(s)	269
PvuI	CGATCG	1 cut(s)	59
PvuII	CAGCTG	1 cut(s)	2081
RsaI	GTAC	4 cut(s)	1067, 1515, 2264, 2335
RsaNI	GTAC	4 cut(s)	1066, 1514, 2263, 2334
RseI	CAYNNNNRTG	2 cut(s)	153, 956
SacI	GAGCTC	2 cut(s)	542, 1237
SaqAI	TTAA	3 cut(s)	1562, 1643, 2375
Sau3AI	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1762, 1864, 1956
Sau96I	GGNCC	2 cut(s)	727, 1928
SchI	GAGTC	2 cut(s)	1151, 1975
ScrFI	CCNGG	5 cut(s)	878, 1491, 2195, 2210, 2358
SduI	GDGCHC	3 cut(s)	542, 1205, 1237
SfaNI	GCATC	9 cut(s)	145, 523, 1111, 1310, 1379, 1540, 1660, 1975, 2035
SfcI	CTRYAG	3 cut(s)	336, 1621, 2004
Sfr274I	CTCGAG	1 cut(s)	1230
SfuI	TTCGAA	1 cut(s)	2301
SgrAI	CRCCGGYG	1 cut(s)	358
SinI	GGWCC	1 cut(s)	727
SlaI	CTCGAG	1 cut(s)	1230
SmiMI	CAYNNNNRTG	2 cut(s)	153, 956
SmlI	CTYRAG	3 cut(s)	747, 790, 1230
SmoI	CTYRAG	3 cut(s)	747, 790, 1230
SsiI	CCGC	9 cut(s)	5, 111, 136, 429, 693, 811, 1267, 1886, 2098
SspMI	CTAG	2 cut(s)	191, 441
SstI	GAGCTC	2 cut(s)	542, 1237
StyD4I	CCNGG	5 cut(s)	876, 1489, 2193, 2208, 2356
StyI	CCWWGG	3 cut(s)	295, 1860, 2510
TaaI	ACNGT	6 cut(s)	340, 842, 1070, 1484, 1574, 2320
TaiI	ACGT	1 cut(s)	1468
TaqI	TCGA	9 cut(s)	153, 257, 308, 775, 1231, 1654, 1900, 1964, 2301
TatI	WGTACW	2 cut(s)	1513, 2333
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	4 cut(s)	962, 1163, 1908, 2420
Tru1I	TTAA	3 cut(s)	1562, 1643, 2375
Tru9I	TTAA	3 cut(s)	1562, 1643, 2375
TscAI	CASTG	2 cut(s)	1067, 2493
TseFI	GTSAC	1 cut(s)	1771
Tsp45I	GTSAC	1 cut(s)	1771
TspRI	CASTG	2 cut(s)	1067, 2493
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	727
XapI	RAATTY	3 cut(s)	1252, 1531, 1712
XceI	RCATGY	1 cut(s)	1316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	955
XhoI	CTCGAG	1 cut(s)	1230
XmnI	GAANNNNTTC	3 cut(s)	555, 966, 2352
XspI	CTAG	2 cut(s)	191, 441
Zsp2I	ATGCAT	1 cut(s)	1990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.