Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0011252

Physical Location & Seq

Genomic Coordinates Reverse (-)

35905573 .. 35912439

Gene Structure 6867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG328300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2553 bp

ATGGCGGAGGCTGCAAAGAGAGACCTCCAAACACCCAAGAGATCCTCCAAGTCCCGATCCGATCCCAAATCCTCATCGCCTTCTCTCGCTCCTCCTCCTACTCCACTCTCCGCCACTCCTCGCCGATCCACGCGCCGCACCTCCCTACACTTTGACGCCCTCCCTCCTCCTCCTCCTCCTCCTCCGACGACTACACTAGTCGAAGATCCGGCAAAGAAACCAAAGAAGAAGAGGAAAACCCCCAAATCTGGAGCCGACAATTCGACGATTGACCATGTCAACACCCCCAAATCTGCTGCCGACGGCAAGAAATCGAAGCAGGAGGAGGAGGAAAAGTTGACAACAGTTGAAGCCGAGTTCTCGCCGGTGTCGCCGGAGCGATCCGAGAAGAAGAAAAGGAAGAGAGGCCATGAGAGGAAGGTGGTTACAACGCGCGGTGGTGTGGCTAGCAAGAAGAGGCAGGTGTTTTACAAGAAGGTTGTGTATGACGGGGGTGAGTTTGAGGTTGGTGATGATGTGTATGTGAAAAGGAGAGAGGATGCGAGCTCCGACGAGGAAGTGGTTCAGGTGGAGCAATGTAGGGTTTGCTTCAAGTCTGGGAAGGCTGTGATGATTGAGTGCGATGATTGTTTGGGTGGGTTCCATTTGAAATGCTTGAAGCCTCCCTTGAAGGAGGTTCCTGAAGGAGATTGGGTGTGCGGTTTTTGTGAGGCTCGCAAATTGGGGAAACAGGTCCAGCTTCCTACTCCCCCTAAAGGGAAGAAATTACGTAGGACATTTCGAGAGAAGCTTCTCTCAAGCGATTTGTGGGCTGCCCGCATTGAAAGTATATGGAAAGAAGTTGACGGTAGCTATTGGTGTCGTGTGCGTTGGTATGTTATCCCGGAAGAGACTGCTGCCGGAAGACAAGCTCATAATCTGAGGAGGGAGATTTATCGCACAAATGATTTTGCCAACATTGAGATGGAATCTATTCTTCAACATTGTTTTGTGATGAACCCTAAAGAATATGCCAAAGCCAATGAAGGGGATGATGTCTTCTTATGCGAATATGAATATGATATTCACTGGTACAGTTTCAAGCGTCTTGCAGAAATTGACGATGATGAAAAGGATGATGATGATGATGCTGAGAGTGATGAAGATTGGAAATGTGGCAAAGACTCAGAATCTGATACAGAAGAAGATGTTGAGTTTGAACAAGAGAGCACAAAGAATATACTGGCTAAACCATCTCGAGCTCATGAGTTGGCTGCAAATTCACATAAGGGGCGGTTCTTTGGACTTCAAAAGATTGGAATGAAGAAAATCCCCGAGCATGTTAGATGCCATAAGCAGACTGCTCTTGAAAGAGCAAAATCAACACTTCTGTTGGCATCATTGCCTAAGTCTTTACCTTGCAGGGATAAAGAAATGTTGGAGATAAGTGCATTCATCAAGGGTGCCATCTCTGATGATAAATGTCTTGGACGTTGCCTCTATATTCACGGTGTTCCTGGAACTGGAAAGACTATGAGTGTACTGGCAGTAATGAGGAATTTGAGGTCTGAAGTTGATGCTGGAAGTTTAAGACCTTACTGTTTTGTGGAGATAAATGGTCTAAAGTTGGCAGCACCTGAGAATATCTACAGGCTTATGTTTGCACAGGTTATATATGAAGCGTTAAGTGGGCATCGAGTTGGTTGGAAAAAGGCTCTCCACTTGCTAAATGAGCGATTTTCTGATGGAAAGAAATTCGGCAAAGAGGATGACAAACCTTGTATTCTTCTTATTGATGAACTTGATCTTCTTGTGACCAGAAACCAATCGGTTCTCTATAACATTCTTGACTGGCCTACTAAGCCACACTCAAAATTAGTTGTAATAGGCATAGCAAATACCATGGATCTTCCGGAAAAGTTGCTTCCGCGTATTTCAAGTCGAATGGGAATCCAAAGGCTTTGCTTTGGCCCCTATAATTACCAGCAGCTTCAAGAGATCATTTCGAGTCGGCTTAGAGGAATTGATGCATTTGAAAAACAAGCTATAGAGTTCGCTTCAAGAAAGGTAGCAGCTATTTCAGGAGATGCTCGTCGTGCATTGGAAATATGCAGGCGTGCAGCTGAAATAAAAGATTACCGCATAAAGAAGCTAATTTCAACTCCCAACAAAGCTTCTAAAGAAAAAGCACTTGTTGGTATGGCAGAGGTTGAAGCAGCCATACAAGAAATGTTCCAGGCACCTCATATCCAGGTGATGAAAACTTGTTCCAAACTGGGTAAAATCTATTTGACTGCTATGGTGTACGAACTCTATAAAACAGGAATGGGTGAAACTACTTTCGAAAAGTTGGCAATGACTGTTTATAATCTGTGTACAAGCAATGGAGAAGCATTTCCTGGACATGATACGCTGTTAAAAGTCGGTTGTAAGCTTGGTGAATGCAGAATTATTCTATGTGAATCAGGAGCAAAGCACAGATTGCAGAAGTTACAGCTCAACTTTCCAAGTGACGATGTAGCATTTGCACTGAAGGAAAGCAAGGAACTACCTTGGTTGGCCAAGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

850

Amino Acids

96.1

Weight (kDa)

8.84

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	193 - 236	3.2e-08	PHD-finger
BAH	PF01426	272 - 361	2.5e-11	BAH domain
AAA_16	PF13191	465 - 614	8e-08	AAA ATPase domain
AAA_22	PF13401	491 - 622	1.4e-06	AAA domain
AAA	PF00004	494 - 644	1.1e-16	ATPase family associated with various cellular activities (AAA)
Cdc6-ORC-like_ATPase_lid	PF22606	652 - 704	3.4e-08	Cdc6/ORC-like, ATPase lid domain
AAA_lid_10	PF17872	672 - 709	3.3e-10	AAA lid domain
WHD_Cdc6	PF09079	745 - 836	5.6e-08	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12620 AT4G14700
fragaria_vesca	FvH4_7g17041
malus_domestica	MD03G1176600.v1.1 MD11G1197200.v1.1
prunus_persica	Prupe.4G246200_v2.0.a1 Prupe.5G048200_v2.0.a1 Prupe.5G048200_v2.0.a1
pyrus_communis	pycom03g13390
rosa_chinensis	RchiOBHm_Chr3g0490671
rosa_laevigata	RLG00000022877
rosa_multiflora	Rmu_sc0006380.1_g000017 Rmu_sc0012075.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393320
rosa_rugosa	Rorug03G0245400
rosa_samantha	Rh3AG294600 Rh3BG330800 Rh3CG328300 Rh3DG327700
rosa_wichuraiana	Rw3G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2346
AarI	CACCTGC	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	451
AccB1I	GGYRCC	2 cut(s)	1442, 2218
AccII	CGCG	4 cut(s)	133, 433, 435, 1909
AccIII	TCCGGA	1 cut(s)	1891
AciI	CCGC	9 cut(s)	5, 111, 136, 435, 699, 817, 1273, 1907, 2119
AclWI	GGATC	7 cut(s)	36, 51, 56, 120, 200, 375, 1893
AcoI	YGGCCR	1 cut(s)	2538
AcsI	RAATTY	3 cut(s)	1258, 1537, 1733
AcuI	CTGAAG	3 cut(s)	702, 1569, 2531
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	4 cut(s)	1073, 1521, 2285, 2356
AfiI	CCNNNNNNNGG	5 cut(s)	248, 755, 756, 1026, 1502
AhlI	ACTAGT	1 cut(s)	196
AjnI	CCWGG	4 cut(s)	1495, 2214, 2229, 2377
Alw21I	GWGCWC	3 cut(s)	548, 1211, 1243
Alw26I	GTCTC	2 cut(s)	15, 884
AlwI	GGATC	7 cut(s)	36, 51, 56, 120, 200, 375, 1893
AlwNI	CAGNNNCTG	2 cut(s)	1172, 1616
Ama87I	CYCGRG	2 cut(s)	1236, 1313
Aor13HI	TCCGGA	1 cut(s)	1891
AoxI	GGCC	4 cut(s)	406, 1832, 1948, 2538
ApoI	RAATTY	3 cut(s)	1258, 1537, 1733
Asp700I	GAANNNNTTC	3 cut(s)	561, 972, 2373
AspLEI	GCGC	2 cut(s)	135, 435
AspS9I	GGNCC	2 cut(s)	733, 1949
AsuC2I	CCSGG	1 cut(s)	884
AsuHPI	GGTGA	5 cut(s)	506, 521, 2245, 2321, 2429
AsuII	TTCGAA	1 cut(s)	2322
AsuNHI	GCTAGC	1 cut(s)	446
AvaI	CYCGRG	2 cut(s)	1236, 1313
AvaII	GGWCC	1 cut(s)	733
BalI	TGGCCA	1 cut(s)	2540
BanI	GGYRCC	2 cut(s)	1442, 2218
BanII	GRGCYC	2 cut(s)	548, 1243
BarI	GAAGNNNNNNTAC	2 cut(s)	2184, 2216
BbsI	GAAGAC	2 cut(s)	910, 1030
Bbv12I	GWGCWC	3 cut(s)	548, 1211, 1243
BbvI	GCAGC	9 cut(s)	283, 799, 883, 1240, 1622, 1978, 2063, 2111, 2207
BccI	CCATC	4 cut(s)	958, 1240, 1454, 1718
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	4 cut(s)	1497, 2216, 2231, 2379
BcnI	CCSGG	1 cut(s)	884
BcoDI	GTCTC	2 cut(s)	15, 884
BcuI	ACTAGT	1 cut(s)	196
BfaI	CTAG	2 cut(s)	197, 447
BfmI	CTRYAG	2 cut(s)	1627, 2025
BfuAI	ACCTGC	1 cut(s)	451
Bme1390I	CCNGG	5 cut(s)	884, 1497, 2216, 2231, 2379
Bme18I	GGWCC	1 cut(s)	733
BmeT110I	CYCGRG	2 cut(s)	1236, 1313
BmgT120I	GGNCC	2 cut(s)	733, 1949
BmiI	GGNNCC	6 cut(s)	253, 641, 678, 1444, 1951, 2220
BmrFI	CCNGG	5 cut(s)	884, 1497, 2216, 2231, 2379
BmrI	ACTGGG	1 cut(s)	2264
BmsI	GCATC	8 cut(s)	529, 1117, 1316, 1385, 1546, 1681, 1996, 2056
BmtI	GCTAGC	1 cut(s)	450
BmuI	ACTGGG	1 cut(s)	2264
BpiI	GAAGAC	2 cut(s)	910, 1030
BpmI	CTGGAG	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	2322
BpuEI	CTTGAG	1 cut(s)	781
BpuMI	CCSGG	1 cut(s)	884
BsaAI	YACGTR	1 cut(s)	770
BsaHI	GRCGYC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	1881, 2531
BsaWI	WCCGGW	1 cut(s)	1891
BsaXI	ACNNNNNCTCC	4 cut(s)	320, 350, 678, 708
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 755, 756, 1026, 1502
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	6 cut(s)	1073, 1227, 1507, 1527, 1835, 2259
Bse3DI	GCAATG	4 cut(s)	581, 1379, 2340, 2368
BseAI	TCCGGA	1 cut(s)	1891
BseBI	CCWGG	4 cut(s)	1497, 2216, 2231, 2379
BseDI	CCNNGG	2 cut(s)	1881, 2531
BseGI	GGATG	4 cut(s)	544, 1036, 1120, 1753
BseLI	CCNNNNNNNGG	5 cut(s)	248, 755, 756, 1026, 1502
BseMI	GCAATG	4 cut(s)	581, 1379, 2340, 2368
BseMII	CTCAG	4 cut(s)	911, 1122, 1179, 1608
BseNI	ACTGG	6 cut(s)	1073, 1227, 1507, 1527, 1835, 2259
BseXI	GCAGC	9 cut(s)	283, 799, 883, 1240, 1622, 1978, 2063, 2111, 2207
BsgI	GTGCAG	1 cut(s)	2118
Bsh1236I	CGCG	4 cut(s)	133, 433, 435, 1909
BshFI	GGCC	4 cut(s)	408, 1834, 1950, 2540
BshNI	GGYRCC	2 cut(s)	1442, 2218
BsiHKAI	GWGCWC	3 cut(s)	548, 1211, 1243
BsiHKCI	CYCGRG	2 cut(s)	1236, 1313
BsiSI	CCGG	6 cut(s)	209, 365, 374, 884, 900, 1892
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	5 cut(s)	248, 755, 756, 1026, 1502
BsmAI	GTCTC	2 cut(s)	15, 884
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	2 cut(s)	1430, 2426
BsnI	GGCC	4 cut(s)	408, 1834, 1950, 2540
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	2 cut(s)	1236, 1313
Bsp119I	TTCGAA	1 cut(s)	2322
Bsp1286I	GDGCHC	3 cut(s)	548, 1211, 1243
Bsp13I	TCCGGA	1 cut(s)	1891
Bsp1407I	TGTACA	1 cut(s)	2354
Bsp143I	GATC	9 cut(s)	41, 56, 61, 125, 205, 380, 1783, 1885, 1977
Bsp19I	CCATGG	1 cut(s)	1881
BspACI	CCGC	9 cut(s)	5, 111, 136, 435, 699, 817, 1273, 1907, 2119
BspANI	GGCC	4 cut(s)	408, 1834, 1950, 2540
BspCNI	CTCAG	4 cut(s)	912, 1123, 1178, 1609
BspEI	TCCGGA	1 cut(s)	1891
BspFNI	CGCG	4 cut(s)	133, 433, 435, 1909
BspHI	TCATGA	1 cut(s)	1243
BspLI	GGNNCC	6 cut(s)	253, 641, 678, 1444, 1951, 2220
BspMI	ACCTGC	1 cut(s)	451
BspOI	GCTAGC	1 cut(s)	450
BspPI	GGATC	7 cut(s)	36, 51, 56, 120, 200, 375, 1893
BspT104I	TTCGAA	1 cut(s)	2322
BspT107I	GGYRCC	2 cut(s)	1442, 2218
BspTNI	GGTCTC	1 cut(s)	15
BsrDI	GCAATG	4 cut(s)	581, 1379, 2340, 2368
BsrFI	RCCGGY	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	2354
BsrI	ACTGG	6 cut(s)	1073, 1227, 1507, 1527, 1835, 2259
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	1881, 2531
BssMI	GATC	9 cut(s)	41, 56, 61, 125, 205, 380, 1783, 1885, 1977
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	1881, 2531
Bst2UI	CCWGG	4 cut(s)	1497, 2216, 2231, 2379
Bst4CI	ACNGT	6 cut(s)	346, 848, 1076, 1490, 1580, 2341
Bst6I	CTCTTC	4 cut(s)	224, 395, 449, 882
BstACI	GRCGYC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	2461
BstAUI	TGTACA	1 cut(s)	2354
BstBAI	YACGTR	1 cut(s)	770
BstBI	TTCGAA	1 cut(s)	2322
BstC8I	GCNNGC	6 cut(s)	448, 544, 715, 817, 2093, 2097
BstDEI	CTNAG	7 cut(s)	920, 1131, 1165, 1386, 1617, 1839, 1994
BstDSI	CCRYGG	1 cut(s)	1881
BstF5I	GGATG	4 cut(s)	544, 1036, 1120, 1753
BstFNI	CGCG	4 cut(s)	133, 433, 435, 1909
BstHHI	GCGC	2 cut(s)	135, 435
BstKTI	GATC	9 cut(s)	44, 59, 64, 128, 208, 383, 1786, 1888, 1980
BstMAI	GTCTC	2 cut(s)	15, 884
BstMBI	GATC	9 cut(s)	41, 56, 61, 125, 205, 380, 1783, 1885, 1977
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 370, 1711, 1840, 2075, 2461
BstNI	CCWGG	4 cut(s)	1497, 2216, 2231, 2379
BstNSI	RCATGY	1 cut(s)	1322
BstSCI	CCNGG	5 cut(s)	882, 1495, 2214, 2229, 2377
BstSFI	CTRYAG	2 cut(s)	1627, 2025
BstSNI	TACGTA	1 cut(s)	770
BstUI	CGCG	4 cut(s)	133, 433, 435, 1909
BstV1I	GCAGC	9 cut(s)	283, 799, 883, 1240, 1622, 1978, 2063, 2111, 2207
BstV2I	GAAGAC	2 cut(s)	910, 1030
BstX2I	RGATCY	3 cut(s)	41, 205, 1885
BstYI	RGATCY	3 cut(s)	41, 205, 1885
BsuRI	GGCC	4 cut(s)	408, 1834, 1950, 2540
BtgI	CCRYGG	1 cut(s)	1881
BtgZI	GCGATG	2 cut(s)	60, 636
BtsCI	GGATG	4 cut(s)	544, 1036, 1120, 1753
BtsIMutI	CAGTG	2 cut(s)	1066, 2507
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	6 cut(s)	448, 544, 715, 817, 2093, 2097
CaiI	CAGNNNCTG	2 cut(s)	1172, 1616
CciI	TCATGA	1 cut(s)	1243
CfoI	GCGC	2 cut(s)	135, 435
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	733, 1949
CseI	GACGC	2 cut(s)	164, 1073
Csp6I	GTAC	4 cut(s)	1072, 1520, 2284, 2355
CviAII	CATG	6 cut(s)	275, 410, 1244, 1319, 1882, 2384
CviQI	GTAC	4 cut(s)	1072, 1520, 2284, 2355
DdeI	CTNAG	7 cut(s)	920, 1131, 1165, 1386, 1617, 1839, 1994
DpnI	GATC	9 cut(s)	43, 58, 63, 127, 207, 382, 1785, 1887, 1979
DpnII	GATC	9 cut(s)	41, 56, 61, 125, 205, 380, 1783, 1885, 1977
EaeI	YGGCCR	1 cut(s)	2538
Eam1104I	CTCTTC	4 cut(s)	224, 395, 449, 882
EarI	CTCTTC	4 cut(s)	224, 395, 449, 882
EciI	GGCGGA	2 cut(s)	20, 100
Ecl136II	GAGCTC	2 cut(s)	546, 1241
Eco105I	TACGTA	1 cut(s)	770
Eco130I	CCWWGG	2 cut(s)	1881, 2531
Eco24I	GRGCYC	2 cut(s)	548, 1243
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	733
Eco53kI	GAGCTC	2 cut(s)	546, 1241
Eco57I	CTGAAG	3 cut(s)	702, 1569, 2531
Eco88I	CYCGRG	2 cut(s)	1236, 1313
EcoICRI	GAGCTC	2 cut(s)	546, 1241
EcoRII	CCWGG	4 cut(s)	1495, 2214, 2229, 2377
EcoT14I	CCWWGG	2 cut(s)	1881, 2531
EcoT22I	ATGCAT	1 cut(s)	2011
EcoT38I	GRGCYC	2 cut(s)	548, 1243
ErhI	CCWWGG	2 cut(s)	1881, 2531
FaeI	CATG	6 cut(s)	278, 413, 1247, 1322, 1885, 2387
FalI	AAGNNNNNCTT	2 cut(s)	650, 682
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	6 cut(s)	274, 409, 1243, 1318, 1881, 2383
FauI	CCCGC	1 cut(s)	824
FokI	GGATG	4 cut(s)	551, 1043, 1127, 1760
FriOI	GRGCYC	2 cut(s)	548, 1243
FspBI	CTAG	2 cut(s)	197, 447
GlaI	GCGC	2 cut(s)	134, 434
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	4 cut(s)	408, 1834, 1950, 2540
HapII	CCGG	6 cut(s)	209, 365, 374, 884, 900, 1892
HgaI	GACGC	2 cut(s)	164, 1073
HhaI	GCGC	2 cut(s)	135, 435
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	6 cut(s)	278, 413, 1247, 1322, 1885, 2387
Hin6I	GCGC	2 cut(s)	133, 433
HinP1I	GCGC	2 cut(s)	133, 433
HincII	GTYRAC	3 cut(s)	280, 339, 844
HindII	GTYRAC	3 cut(s)	280, 339, 844
HindIII	AAGCTT	3 cut(s)	788, 2151, 2411
HinfI	GANTC	6 cut(s)	968, 1163, 1169, 1929, 1987, 2441
HpaII	CCGG	6 cut(s)	209, 365, 374, 884, 900, 1892
HphI	GGTGA	5 cut(s)	506, 521, 2245, 2321, 2429
Hpy166II	GTNNAC	6 cut(s)	280, 339, 844, 1520, 2284, 2355
Hpy8I	GTNNAC	6 cut(s)	280, 339, 844, 1520, 2284, 2355
Hpy99I	CGWCG	5 cut(s)	190, 268, 305, 554, 2076
HpyAV	CCTTC	8 cut(s)	90, 412, 469, 595, 664, 677, 1019, 2506
HpyCH4III	ACNGT	6 cut(s)	346, 848, 1076, 1490, 1580, 2341
HpyCH4IV	ACGT	2 cut(s)	769, 1471
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 370, 1711, 1840, 2075, 2461
HpyF3I	CTNAG	7 cut(s)	920, 1131, 1165, 1386, 1617, 1839, 1994
HpySE526I	ACGT	2 cut(s)	769, 1471
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	6 cut(s)	278, 413, 1247, 1322, 1885, 2387
HspAI	GCGC	2 cut(s)	133, 433
Kpn2I	TCCGGA	1 cut(s)	1891
Kzo9I	GATC	9 cut(s)	41, 56, 61, 125, 205, 380, 1783, 1885, 1977
LmnI	GCTCC	6 cut(s)	94, 251, 376, 551, 571, 2447
Lsp1109I	GCAGC	9 cut(s)	283, 799, 883, 1240, 1622, 1978, 2063, 2111, 2207
LweI	GCATC	8 cut(s)	529, 1117, 1316, 1385, 1546, 1681, 1996, 2056
MaeI	CTAG	2 cut(s)	197, 447
MaeII	ACGT	2 cut(s)	769, 1471
MaeIII	GTNAC	4 cut(s)	424, 1792, 2469, 2489
MalI	GATC	9 cut(s)	43, 58, 63, 127, 207, 382, 1785, 1887, 1979
MboI	GATC	9 cut(s)	41, 56, 61, 125, 205, 380, 1783, 1885, 1977
MflI	RGATCY	3 cut(s)	41, 205, 1885
MhlI	GDGCHC	3 cut(s)	548, 1211, 1243
MlsI	TGGCCA	1 cut(s)	2540
MluNI	TGGCCA	1 cut(s)	2540
MlyI	GAGTC	2 cut(s)	1157, 1996
MmeI	TCCRAC	4 cut(s)	209, 573, 1398, 1664
Mox20I	TGGCCA	1 cut(s)	2540
Mph1103I	ATGCAT	1 cut(s)	2011
MroI	TCCGGA	1 cut(s)	1891
MroXI	GAANNNNTTC	3 cut(s)	561, 972, 2373
MscI	TGGCCA	1 cut(s)	2540
MseI	TTAA	3 cut(s)	1568, 1664, 2396
MslI	CAYNNNNRTG	1 cut(s)	962
Msp20I	TGGCCA	1 cut(s)	2540
MspA1I	CMGCKG	1 cut(s)	2102
MspI	CCGG	6 cut(s)	209, 365, 374, 884, 900, 1892
MspR9I	CCNGG	5 cut(s)	884, 1497, 2216, 2231, 2379
Mva1269I	GAATGC	2 cut(s)	1430, 2426
MvaI	CCWGG	4 cut(s)	1497, 2216, 2231, 2379
MvnI	CGCG	4 cut(s)	133, 433, 435, 1909
MwoI	GCNNNNNNNGC	6 cut(s)	11, 370, 1711, 1840, 2075, 2461
NciI	CCSGG	1 cut(s)	884
NcoI	CCATGG	1 cut(s)	1881
NdeII	GATC	9 cut(s)	41, 56, 61, 125, 205, 380, 1783, 1885, 1977
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	6 cut(s)	278, 413, 1247, 1322, 1885, 2387
NlaIV	GGNNCC	6 cut(s)	253, 641, 678, 1444, 1951, 2220
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	2 cut(s)	1792, 2489
NsiI	ATGCAT	1 cut(s)	2011
NspI	RCATGY	1 cut(s)	1322
NspV	TTCGAA	1 cut(s)	2322
PaeR7I	CTCGAG	1 cut(s)	1236
PagI	TCATGA	1 cut(s)	1243
PaqCI	CACCTGC	1 cut(s)	451
PctI	GAATGC	2 cut(s)	1430, 2426
PdmI	GAANNNNTTC	3 cut(s)	561, 972, 2373
PfeI	GAWTC	4 cut(s)	968, 1169, 1929, 2441
PflFI	GACNNNGTC	1 cut(s)	275
PfoI	TCCNGGA	3 cut(s)	882, 1495, 2377
PleI	GAGTC	2 cut(s)	1157, 1995
PpsI	GAGTC	2 cut(s)	1157, 1995
Ppu21I	YACGTR	1 cut(s)	770
PsiI	TTATAA	1 cut(s)	2346
Psp124BI	GAGCTC	2 cut(s)	548, 1243
Psp6I	CCWGG	4 cut(s)	1495, 2214, 2229, 2377
PspGI	CCWGG	4 cut(s)	1495, 2214, 2229, 2377
PspN4I	GGNNCC	6 cut(s)	253, 641, 678, 1444, 1951, 2220
PspPI	GGNCC	2 cut(s)	733, 1949
PstNI	CAGNNNCTG	2 cut(s)	1172, 1616
PsuI	RGATCY	3 cut(s)	41, 205, 1885
PsyI	GACNNNGTC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	2102
RsaI	GTAC	4 cut(s)	1073, 1521, 2285, 2356
RsaNI	GTAC	4 cut(s)	1072, 1520, 2284, 2355
RseI	CAYNNNNRTG	1 cut(s)	962
SacI	GAGCTC	2 cut(s)	548, 1243
SaqAI	TTAA	3 cut(s)	1568, 1664, 2396
Sau3AI	GATC	9 cut(s)	41, 56, 61, 125, 205, 380, 1783, 1885, 1977
Sau96I	GGNCC	2 cut(s)	733, 1949
SchI	GAGTC	2 cut(s)	1157, 1996
ScrFI	CCNGG	5 cut(s)	884, 1497, 2216, 2231, 2379
SduI	GDGCHC	3 cut(s)	548, 1211, 1243
SfaNI	GCATC	8 cut(s)	529, 1117, 1316, 1385, 1546, 1681, 1996, 2056
SfcI	CTRYAG	2 cut(s)	1627, 2025
Sfr274I	CTCGAG	1 cut(s)	1236
SfuI	TTCGAA	1 cut(s)	2322
SgrAI	CRCCGGYG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	733
SlaI	CTCGAG	1 cut(s)	1236
SmiMI	CAYNNNNRTG	1 cut(s)	962
SmlI	CTYRAG	2 cut(s)	796, 1236
SmoI	CTYRAG	2 cut(s)	796, 1236
SnaBI	TACGTA	1 cut(s)	770
SpeI	ACTAGT	1 cut(s)	196
SsiI	CCGC	9 cut(s)	5, 111, 136, 435, 699, 817, 1273, 1907, 2119
SspMI	CTAG	2 cut(s)	197, 447
SstI	GAGCTC	2 cut(s)	548, 1243
StyD4I	CCNGG	5 cut(s)	882, 1495, 2214, 2229, 2377
StyI	CCWWGG	2 cut(s)	1881, 2531
TaaI	ACNGT	6 cut(s)	346, 848, 1076, 1490, 1580, 2341
TaiI	ACGT	2 cut(s)	772, 1474
TaqI	TCGA	9 cut(s)	201, 263, 314, 781, 1237, 1675, 1921, 1985, 2322
TatI	WGTACW	2 cut(s)	1519, 2354
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	4 cut(s)	968, 1169, 1929, 2441
Tru1I	TTAA	3 cut(s)	1568, 1664, 2396
Tru9I	TTAA	3 cut(s)	1568, 1664, 2396
TscAI	CASTG	2 cut(s)	1073, 2514
TseFI	GTSAC	2 cut(s)	1792, 2489
Tsp45I	GTSAC	2 cut(s)	1792, 2489
TspRI	CASTG	2 cut(s)	1073, 2514
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	733
XapI	RAATTY	3 cut(s)	1258, 1537, 1733
XceI	RCATGY	1 cut(s)	1322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	961
XhoI	CTCGAG	1 cut(s)	1236
XmnI	GAANNNNTTC	3 cut(s)	561, 972, 2373
XspI	CTAG	2 cut(s)	197, 447
Zsp2I	ATGCAT	1 cut(s)	2011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.