Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011252

Physical Location & Seq

Genomic Coordinates Reverse (-)

37323077 .. 37329983

Gene Structure 6907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2541 bp

ATGGCGGAGGCTGCAAAGAGAGACCTCCAAACACTGTTTGGGCAAACACCCAAGAGATCCTCCAAGTCCGGATCGGATCCCAAATCCTCATCGCCTTCTCTCGCTCCTCCTCCTACTCCGCTCTCCGCCACTCCTCGCCGATCCACGCGCCGCACCTCCCTACACTTCGATGCCCTCCCTCCTCCTCCGACGACTACACTAGTCGAAGATCCGGCAAAGAAACCAAAGAGGAAGAGGAAAACCCCCAAATCTGGAGCCGACAATTCGACGATTTACCATGTCAACACCCCCAAATCTGCTGCCCAAGGCAAGAAATTGAAGCAAGAGGAGGAGGAAAAGTTGACTACAGTTGAAGCCGAGTTCTCGCCGGTGTCGCCGGAGCAATCCGAGAAGAAGAAAAGGAAGAGAGGCCATGAGAGGAAGGTGGTTACAACGCGCGGTGGTGTGGCTAGCAAGAAGAGGCAGGTGTTTTACAAGAAGGTTGTGTATGACGAGGGTGAGTTTGAGGTTGGTGATGATGTGTATGTGAAAAGGAGAGAGGATGCGAGCTCCGACGAGGAAGTGGTTCAGGTGGAGCAATGTAGGGTTTGCTTCAAGTCTGGGAAGGCTGTGATGATTGAGTGCGATGATTGTTTGGGTGGGTTCCATTTGAAATGCTTGAAGCCTCCCTTGAAGGAGGTTCCTGAAGGAGATTGGGTGTGCGGTTTTTGTGAGGCTCGCAAATTGGGGAAAGAGGTCCAGCTTCCTACTCCCCCTCAAGGGAAGAAATTACGTAGGACATTTCGAGAGAAGCTTCTCTCAAGCGATTTGTGGGCTGCCCGCATTGAAAGTATATGGAAAGAAGTTGACGGTAGCTATTGGTGTCGTGTGCGTTGGTATGTTATCCCGGAAGAGACTGCTGCCGGAAGACAAGCTCATAATCTGAGGAGGGAGATTTATCGCACAAATGATTTTGCCAACATTGAGATGGAATCTATTCTTCAACATTGTTTTGTGATGAACCCTAAAGAATATGCCAAAGCCAATGAAGGGGATGATGTCTTCTTATGCGAATATGAATATGATATTCACTGGTACAGTTTCAAGCGTCTTGCAGAAATTGACGATGATGAAAAGGATGATGATGATGATGCTGAGAGTGATGAAGATTGGAAATGTGGCAAAGACTCAGACTCTGATACAGAAGAAGATGTTGAGTTTGAAGAAGAGAGCACAAAGAATATACTGGCTAAACCATCTCGAGCTCATGAGTTGGCTGCAAATTCACATAAGGGGCGGTTCTTTGGACTTCAAAAGATTGGAATGAAGAAAATCCCCGAGCATGTTAGATGCCATAAGCAGACTGCTCTTGAAAGAGCAAAATCAACACTTCTGTTGGCATCATTGCCTAAGTCTTTACCTTGCAGGGATAAAGAAATGTTGGAGATAAGTGCATTCATCAAGGGTGCCATCTCTGATGATAAATGTCTTGGACGTTGCCTCTATATTCACGGTGTTCCTGGAACTGGAAAGACTATGAGTGTACTGGCAGTAATGAGGAATTTGAGGTCTGAAGTTGATGCTGGAAGTTTAAGACCTTACTGTTTTGTGGAGATAAATGGTTTAAAGTTGGCAGCACCTGAGAATATCTACAGGGTTATATATGAAGCGTTAAGTGGGCATCGAGTTGGTTGGAAAAAGGCTCTCCACTTGCTAAATGAGCGATTTTCTGATGGAAAGAAATTCGGCAAAGAGGATGACAAACCTTGTATTCTTCTTATTGATGAACTTGATCTTCTTGTGACCAGAAACCAATCGGTTCTCTATAACATTCTTGACTGGCCTACTAAGCCACACTCAAAATTAGTTGTAATAGGCATAGCAAATACCATGGATCTTCCGGAAAAGTTGCTTCCGCGTATTTCAAGTCGAATGGGAATCCAAAGGCTTTGCTTTGGCCCCTATAATTACCAGCAGCTTCAAGAGATCATTTCGAGTCGGCTTAGAGGAATTGATGCATTTGAAAAACAAGCTATAGAGTTCGCTTCAAGAAAGGTAGCAGCTATTTCAGGAGATGCTCGTCGTGCATTGGAAATATGCAGGCGTGCAGCTGAAATCAAAGATTACCGCATAAAGAAGCTAATTTCAACTCCCAACAATGCTTCTAAAGAAAAAGCACTTGTTGGTATGGCAGAGGTTGAAGCAGCCATACAAGAAATGTTCCAGGCACCTCATATCCAGGTGATGAAAACTTGTTCCAAACTGGGTAAAATCTATTTGACTGCTATGGTGTATGAACTCTATAAAACAGGAATGGGTGAAACTACTTTCGAAAAGTTGGCAATGACTGTTTATAATCTGTGTACAAGCAATGGAGAAGCATTTCCTGGACATGATACGCTGTTAAAAGTCGGTTGTAAGCTTGGTGAATGCAGAATTATTCTATGTGAATCAGGAGCAAAGCACAGATTGCAGAAGTTACAGCTCAACTTTCCAAGCGACGATGTAGCATTTGCACTGAAGGAAAGCAAGGAACTACCTTGGTTGGCCAAGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

846

Amino Acids

95.71

Weight (kDa)

8.65

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	194 - 237	3.2e-08	PHD-finger
BAH	PF01426	273 - 362	2.5e-11	BAH domain
AAA_16	PF13191	466 - 610	2.6e-07	AAA ATPase domain
AAA_22	PF13401	492 - 618	6.1e-08	AAA domain
AAA	PF00004	495 - 640	6.6e-17	ATPase family associated with various cellular activities (AAA)
Cdc6-ORC-like_ATPase_lid	PF22606	648 - 700	3.4e-08	Cdc6/ORC-like, ATPase lid domain
AAA_lid_10	PF17872	668 - 702	3.3e-10	AAA lid domain
WHD_Cdc6	PF09079	741 - 832	5.6e-08	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12620 AT4G14700
fragaria_vesca	FvH4_7g17041
malus_domestica	MD03G1176600.v1.1 MD11G1197200.v1.1
prunus_persica	Prupe.4G246200_v2.0.a1 Prupe.5G048200_v2.0.a1 Prupe.5G048200_v2.0.a1
pyrus_communis	pycom03g13390
rosa_chinensis	RchiOBHm_Chr3g0490671
rosa_laevigata	RLG00000022877
rosa_multiflora	Rmu_sc0006380.1_g000017 Rmu_sc0012075.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393320
rosa_rugosa	Rorug03G0245400
rosa_samantha	Rh3AG294600 Rh3BG330800 Rh3CG328300 Rh3DG327700
rosa_wichuraiana	Rw3G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2334
AarI	CACCTGC	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	454
AccB1I	GGYRCC	2 cut(s)	1445, 2206
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	4 cut(s)	148, 436, 438, 1897
AccIII	TCCGGA	2 cut(s)	68, 1879
AclWI	GGATC	7 cut(s)	51, 71, 79, 84, 135, 203, 1881
AcoI	YGGCCR	1 cut(s)	2526
AcsI	RAATTY	3 cut(s)	1261, 1540, 1721
AcuI	CTGAAG	3 cut(s)	705, 1572, 2519
AfaI	GTAC	3 cut(s)	1076, 1524, 2344
AfiI	CCNNNNNNNGG	5 cut(s)	251, 758, 759, 1029, 1505
AhlI	ACTAGT	1 cut(s)	199
AjnI	CCWGG	4 cut(s)	1498, 2202, 2217, 2365
Alw21I	GWGCWC	3 cut(s)	551, 1214, 1246
Alw26I	GTCTC	2 cut(s)	15, 887
AlwI	GGATC	7 cut(s)	51, 71, 79, 84, 135, 203, 1881
AlwNI	CAGNNNCTG	2 cut(s)	1175, 1619
Ama87I	CYCGRG	2 cut(s)	1239, 1316
Aor13HI	TCCGGA	2 cut(s)	68, 1879
AoxI	GGCC	4 cut(s)	409, 1820, 1936, 2526
ApoI	RAATTY	3 cut(s)	1261, 1540, 1721
Asp700I	GAANNNNTTC	3 cut(s)	564, 975, 2361
AspLEI	GCGC	2 cut(s)	150, 438
AspS9I	GGNCC	2 cut(s)	736, 1937
AsuC2I	CCSGG	1 cut(s)	887
AsuHPI	GGTGA	5 cut(s)	509, 524, 2233, 2309, 2417
AsuII	TTCGAA	1 cut(s)	2310
AsuNHI	GCTAGC	1 cut(s)	449
AvaI	CYCGRG	2 cut(s)	1239, 1316
AvaII	GGWCC	1 cut(s)	736
BalI	TGGCCA	1 cut(s)	2528
BamHI	GGATCC	1 cut(s)	76
BanI	GGYRCC	2 cut(s)	1445, 2206
BanII	GRGCYC	2 cut(s)	551, 1246
BarI	GAAGNNNNNNTAC	2 cut(s)	2172, 2204
BbsI	GAAGAC	2 cut(s)	913, 1033
Bbv12I	GWGCWC	3 cut(s)	551, 1214, 1246
BbvI	GCAGC	9 cut(s)	286, 802, 886, 1243, 1625, 1966, 2051, 2099, 2195
BccI	CCATC	4 cut(s)	961, 1243, 1457, 1706
BciT130I	CCWGG	4 cut(s)	1500, 2204, 2219, 2367
BcnI	CCSGG	1 cut(s)	887
BcoDI	GTCTC	2 cut(s)	15, 887
BcuI	ACTAGT	1 cut(s)	199
BfaI	CTAG	2 cut(s)	200, 450
BfmI	CTRYAG	3 cut(s)	345, 1630, 2013
BfuAI	ACCTGC	1 cut(s)	454
Bme1390I	CCNGG	5 cut(s)	887, 1500, 2204, 2219, 2367
Bme18I	GGWCC	1 cut(s)	736
BmeT110I	CYCGRG	2 cut(s)	1239, 1316
BmgT120I	GGNCC	2 cut(s)	736, 1937
BmiI	GGNNCC	7 cut(s)	78, 256, 644, 681, 1447, 1939, 2208
BmrFI	CCNGG	5 cut(s)	887, 1500, 2204, 2219, 2367
BmrI	ACTGGG	1 cut(s)	2252
BmsI	GCATC	9 cut(s)	160, 532, 1120, 1319, 1388, 1549, 1669, 1984, 2044
BmtI	GCTAGC	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	2252
BpiI	GAAGAC	2 cut(s)	913, 1033
BpmI	CTGGAG	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	2310
BpuEI	CTTGAG	2 cut(s)	741, 784
BpuMI	CCSGG	1 cut(s)	887
BsaAI	YACGTR	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	304, 1869, 2519
BsaWI	WCCGGW	2 cut(s)	68, 1879
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 681, 711
Bsc4I	CCNNNNNNNGG	5 cut(s)	251, 758, 759, 1029, 1505
Bse118I	RCCGGY	1 cut(s)	367
Bse1I	ACTGG	6 cut(s)	1076, 1230, 1510, 1530, 1823, 2247
Bse3DI	GCAATG	4 cut(s)	584, 1382, 2328, 2356
BseAI	TCCGGA	2 cut(s)	68, 1879
BseBI	CCWGG	4 cut(s)	1500, 2204, 2219, 2367
BseDI	CCNNGG	3 cut(s)	304, 1869, 2519
BseGI	GGATG	4 cut(s)	547, 1039, 1123, 1741
BseLI	CCNNNNNNNGG	5 cut(s)	251, 758, 759, 1029, 1505
BseMI	GCAATG	4 cut(s)	584, 1382, 2328, 2356
BseMII	CTCAG	4 cut(s)	914, 1125, 1182, 1611
BseNI	ACTGG	6 cut(s)	1076, 1230, 1510, 1530, 1823, 2247
BseRI	GAGGAG	8 cut(s)	96, 99, 123, 171, 174, 341, 344, 940
BseXI	GCAGC	9 cut(s)	286, 802, 886, 1243, 1625, 1966, 2051, 2099, 2195
BsgI	GTGCAG	1 cut(s)	2106
Bsh1236I	CGCG	4 cut(s)	148, 436, 438, 1897
BshFI	GGCC	4 cut(s)	411, 1822, 1938, 2528
BshNI	GGYRCC	2 cut(s)	1445, 2206
BsiHKAI	GWGCWC	3 cut(s)	551, 1214, 1246
BsiHKCI	CYCGRG	2 cut(s)	1239, 1316
BsiSI	CCGG	7 cut(s)	69, 212, 368, 377, 887, 903, 1880
BslI	CCNNNNNNNGG	5 cut(s)	251, 758, 759, 1029, 1505
BsmAI	GTCTC	2 cut(s)	15, 887
BsmI	GAATGC	2 cut(s)	1433, 2414
BsnI	GGCC	4 cut(s)	411, 1822, 1938, 2528
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	2 cut(s)	1239, 1316
Bsp119I	TTCGAA	1 cut(s)	2310
Bsp1286I	GDGCHC	3 cut(s)	551, 1214, 1246
Bsp13I	TCCGGA	2 cut(s)	68, 1879
Bsp1407I	TGTACA	1 cut(s)	2342
Bsp143I	GATC	8 cut(s)	56, 71, 76, 140, 208, 1771, 1873, 1965
Bsp19I	CCATGG	1 cut(s)	1869
BspANI	GGCC	4 cut(s)	411, 1822, 1938, 2528
BspCNI	CTCAG	4 cut(s)	915, 1126, 1181, 1612
BspEI	TCCGGA	2 cut(s)	68, 1879
BspFNI	CGCG	4 cut(s)	148, 436, 438, 1897
BspHI	TCATGA	1 cut(s)	1246
BspLI	GGNNCC	7 cut(s)	78, 256, 644, 681, 1447, 1939, 2208
BspMI	ACCTGC	1 cut(s)	454
BspOI	GCTAGC	1 cut(s)	453
BspPI	GGATC	7 cut(s)	51, 71, 79, 84, 135, 203, 1881
BspT104I	TTCGAA	1 cut(s)	2310
BspT107I	GGYRCC	2 cut(s)	1445, 2206
BspTNI	GGTCTC	1 cut(s)	15
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	4 cut(s)	584, 1382, 2328, 2356
BsrFI	RCCGGY	1 cut(s)	367
BsrGI	TGTACA	1 cut(s)	2342
BsrI	ACTGG	6 cut(s)	1076, 1230, 1510, 1530, 1823, 2247
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	304, 1869, 2519
BssMI	GATC	8 cut(s)	56, 71, 76, 140, 208, 1771, 1873, 1965
BssT1I	CCWWGG	3 cut(s)	304, 1869, 2519
Bst2UI	CCWGG	4 cut(s)	1500, 2204, 2219, 2367
Bst4CI	ACNGT	7 cut(s)	36, 349, 851, 1079, 1493, 1583, 2329
Bst6I	CTCTTC	5 cut(s)	227, 398, 452, 885, 1200
BstAPI	GCANNNNNTGC	1 cut(s)	2449
BstAUI	TGTACA	1 cut(s)	2342
BstBAI	YACGTR	1 cut(s)	773
BstBI	TTCGAA	1 cut(s)	2310
BstC8I	GCNNGC	6 cut(s)	451, 547, 718, 820, 2081, 2085
BstDEI	CTNAG	7 cut(s)	923, 1134, 1168, 1389, 1620, 1827, 1982
BstDSI	CCRYGG	1 cut(s)	1869
BstF5I	GGATG	4 cut(s)	547, 1039, 1123, 1741
BstFNI	CGCG	4 cut(s)	148, 436, 438, 1897
BstHHI	GCGC	2 cut(s)	150, 438
BstKTI	GATC	8 cut(s)	59, 74, 79, 143, 211, 1774, 1876, 1968
BstMAI	GTCTC	2 cut(s)	15, 887
BstMBI	GATC	8 cut(s)	56, 71, 76, 140, 208, 1771, 1873, 1965
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 373, 1699, 1828, 2063, 2449
BstNI	CCWGG	4 cut(s)	1500, 2204, 2219, 2367
BstNSI	RCATGY	1 cut(s)	1325
BstSCI	CCNGG	5 cut(s)	885, 1498, 2202, 2217, 2365
BstSFI	CTRYAG	3 cut(s)	345, 1630, 2013
BstSNI	TACGTA	1 cut(s)	773
BstUI	CGCG	4 cut(s)	148, 436, 438, 1897
BstV1I	GCAGC	9 cut(s)	286, 802, 886, 1243, 1625, 1966, 2051, 2099, 2195
BstV2I	GAAGAC	2 cut(s)	913, 1033
BstX2I	RGATCY	4 cut(s)	56, 76, 208, 1873
BstYI	RGATCY	4 cut(s)	56, 76, 208, 1873
BsuRI	GGCC	4 cut(s)	411, 1822, 1938, 2528
BtgI	CCRYGG	1 cut(s)	1869
BtgZI	GCGATG	2 cut(s)	75, 639
BtsCI	GGATG	4 cut(s)	547, 1039, 1123, 1741
BtsIMutI	CAGTG	3 cut(s)	32, 1069, 2495
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	6 cut(s)	451, 547, 718, 820, 2081, 2085
CaiI	CAGNNNCTG	2 cut(s)	1175, 1619
CciI	TCATGA	1 cut(s)	1246
CfoI	GCGC	2 cut(s)	150, 438
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	736, 1937
CseI	GACGC	1 cut(s)	1076
Csp6I	GTAC	3 cut(s)	1075, 1523, 2343
CviAII	CATG	6 cut(s)	278, 413, 1247, 1322, 1870, 2372
CviQI	GTAC	3 cut(s)	1075, 1523, 2343
DdeI	CTNAG	7 cut(s)	923, 1134, 1168, 1389, 1620, 1827, 1982
DpnI	GATC	8 cut(s)	58, 73, 78, 142, 210, 1773, 1875, 1967
DpnII	GATC	8 cut(s)	56, 71, 76, 140, 208, 1771, 1873, 1965
DraI	TTTAAA	1 cut(s)	1605
EaeI	YGGCCR	1 cut(s)	2526
Eam1104I	CTCTTC	5 cut(s)	227, 398, 452, 885, 1200
EarI	CTCTTC	5 cut(s)	227, 398, 452, 885, 1200
EciI	GGCGGA	2 cut(s)	20, 115
Ecl136II	GAGCTC	2 cut(s)	549, 1244
Eco105I	TACGTA	1 cut(s)	773
Eco130I	CCWWGG	3 cut(s)	304, 1869, 2519
Eco24I	GRGCYC	2 cut(s)	551, 1246
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	736
Eco53kI	GAGCTC	2 cut(s)	549, 1244
Eco57I	CTGAAG	3 cut(s)	705, 1572, 2519
Eco88I	CYCGRG	2 cut(s)	1239, 1316
EcoICRI	GAGCTC	2 cut(s)	549, 1244
EcoRII	CCWGG	4 cut(s)	1498, 2202, 2217, 2365
EcoT14I	CCWWGG	3 cut(s)	304, 1869, 2519
EcoT22I	ATGCAT	1 cut(s)	1999
EcoT38I	GRGCYC	2 cut(s)	551, 1246
ErhI	CCWWGG	3 cut(s)	304, 1869, 2519
FaeI	CATG	6 cut(s)	281, 416, 1250, 1325, 1873, 2375
FalI	AAGNNNNNCTT	2 cut(s)	653, 685
FatI	CATG	6 cut(s)	277, 412, 1246, 1321, 1869, 2371
FauI	CCCGC	1 cut(s)	827
FokI	GGATG	4 cut(s)	554, 1046, 1130, 1748
FriOI	GRGCYC	2 cut(s)	551, 1246
FspBI	CTAG	2 cut(s)	200, 450
GlaI	GCGC	2 cut(s)	149, 437
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	4 cut(s)	411, 1822, 1938, 2528
HapII	CCGG	7 cut(s)	69, 212, 368, 377, 887, 903, 1880
HgaI	GACGC	1 cut(s)	1076
HhaI	GCGC	2 cut(s)	150, 438
Hin1II	CATG	6 cut(s)	281, 416, 1250, 1325, 1873, 2375
Hin6I	GCGC	2 cut(s)	148, 436
HinP1I	GCGC	2 cut(s)	148, 436
HincII	GTYRAC	3 cut(s)	283, 342, 847
HindII	GTYRAC	3 cut(s)	283, 342, 847
HindIII	AAGCTT	2 cut(s)	791, 2399
HinfI	GANTC	6 cut(s)	971, 1166, 1172, 1917, 1975, 2429
HpaII	CCGG	7 cut(s)	69, 212, 368, 377, 887, 903, 1880
HphI	GGTGA	5 cut(s)	509, 524, 2233, 2309, 2417
Hpy166II	GTNNAC	5 cut(s)	283, 342, 847, 1523, 2343
Hpy8I	GTNNAC	5 cut(s)	283, 342, 847, 1523, 2343
Hpy99I	CGWCG	5 cut(s)	193, 271, 557, 2064, 2483
HpyAV	CCTTC	8 cut(s)	105, 415, 472, 598, 667, 680, 1022, 2494
HpyCH4III	ACNGT	7 cut(s)	36, 349, 851, 1079, 1493, 1583, 2329
HpyCH4IV	ACGT	2 cut(s)	772, 1474
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 373, 1699, 1828, 2063, 2449
HpyF3I	CTNAG	7 cut(s)	923, 1134, 1168, 1389, 1620, 1827, 1982
HpySE526I	ACGT	2 cut(s)	772, 1474
Hsp92II	CATG	6 cut(s)	281, 416, 1250, 1325, 1873, 2375
HspAI	GCGC	2 cut(s)	148, 436
Kpn2I	TCCGGA	2 cut(s)	68, 1879
Kzo9I	GATC	8 cut(s)	56, 71, 76, 140, 208, 1771, 1873, 1965
LmnI	GCTCC	6 cut(s)	109, 254, 379, 554, 574, 2435
Lsp1109I	GCAGC	9 cut(s)	286, 802, 886, 1243, 1625, 1966, 2051, 2099, 2195
LweI	GCATC	9 cut(s)	160, 532, 1120, 1319, 1388, 1549, 1669, 1984, 2044
MaeI	CTAG	2 cut(s)	200, 450
MaeII	ACGT	2 cut(s)	772, 1474
MaeIII	GTNAC	3 cut(s)	427, 1780, 2457
MalI	GATC	8 cut(s)	58, 73, 78, 142, 210, 1773, 1875, 1967
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	8 cut(s)	56, 71, 76, 140, 208, 1771, 1873, 1965
MflI	RGATCY	4 cut(s)	56, 76, 208, 1873
MhlI	GDGCHC	3 cut(s)	551, 1214, 1246
MlsI	TGGCCA	1 cut(s)	2528
MluNI	TGGCCA	1 cut(s)	2528
MlyI	GAGTC	3 cut(s)	1160, 1166, 1984
MmeI	TCCRAC	4 cut(s)	212, 576, 1401, 1652
Mox20I	TGGCCA	1 cut(s)	2528
Mph1103I	ATGCAT	1 cut(s)	1999
MroI	TCCGGA	2 cut(s)	68, 1879
MroXI	GAANNNNTTC	3 cut(s)	564, 975, 2361
MscI	TGGCCA	1 cut(s)	2528
MseI	TTAA	4 cut(s)	1571, 1604, 1652, 2384
MslI	CAYNNNNRTG	2 cut(s)	168, 965
Msp20I	TGGCCA	1 cut(s)	2528
MspA1I	CMGCKG	1 cut(s)	2090
MspI	CCGG	7 cut(s)	69, 212, 368, 377, 887, 903, 1880
MspR9I	CCNGG	5 cut(s)	887, 1500, 2204, 2219, 2367
Mva1269I	GAATGC	2 cut(s)	1433, 2414
MvaI	CCWGG	4 cut(s)	1500, 2204, 2219, 2367
MvnI	CGCG	4 cut(s)	148, 436, 438, 1897
MwoI	GCNNNNNNNGC	6 cut(s)	11, 373, 1699, 1828, 2063, 2449
NciI	CCSGG	1 cut(s)	887
NcoI	CCATGG	1 cut(s)	1869
NdeII	GATC	8 cut(s)	56, 71, 76, 140, 208, 1771, 1873, 1965
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	6 cut(s)	281, 416, 1250, 1325, 1873, 2375
NlaIV	GGNNCC	7 cut(s)	78, 256, 644, 681, 1447, 1939, 2208
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	1780
NsiI	ATGCAT	1 cut(s)	1999
NspI	RCATGY	1 cut(s)	1325
NspV	TTCGAA	1 cut(s)	2310
PaeR7I	CTCGAG	1 cut(s)	1239
PagI	TCATGA	1 cut(s)	1246
PaqCI	CACCTGC	1 cut(s)	454
PctI	GAATGC	2 cut(s)	1433, 2414
PdmI	GAANNNNTTC	3 cut(s)	564, 975, 2361
PfeI	GAWTC	3 cut(s)	971, 1917, 2429
PfoI	TCCNGGA	3 cut(s)	885, 1498, 2365
PleI	GAGTC	3 cut(s)	1160, 1166, 1983
PpsI	GAGTC	3 cut(s)	1160, 1166, 1983
Ppu21I	YACGTR	1 cut(s)	773
PsiI	TTATAA	1 cut(s)	2334
Psp124BI	GAGCTC	2 cut(s)	551, 1246
Psp6I	CCWGG	4 cut(s)	1498, 2202, 2217, 2365
PspGI	CCWGG	4 cut(s)	1498, 2202, 2217, 2365
PspN4I	GGNNCC	7 cut(s)	78, 256, 644, 681, 1447, 1939, 2208
PspPI	GGNCC	2 cut(s)	736, 1937
PstNI	CAGNNNCTG	2 cut(s)	1175, 1619
PsuI	RGATCY	4 cut(s)	56, 76, 208, 1873
PvuII	CAGCTG	1 cut(s)	2090
RsaI	GTAC	3 cut(s)	1076, 1524, 2344
RsaNI	GTAC	3 cut(s)	1075, 1523, 2343
RseI	CAYNNNNRTG	2 cut(s)	168, 965
SacI	GAGCTC	2 cut(s)	551, 1246
SaqAI	TTAA	4 cut(s)	1571, 1604, 1652, 2384
Sau3AI	GATC	8 cut(s)	56, 71, 76, 140, 208, 1771, 1873, 1965
Sau96I	GGNCC	2 cut(s)	736, 1937
SchI	GAGTC	3 cut(s)	1160, 1166, 1984
ScrFI	CCNGG	5 cut(s)	887, 1500, 2204, 2219, 2367
SduI	GDGCHC	3 cut(s)	551, 1214, 1246
SfaNI	GCATC	9 cut(s)	160, 532, 1120, 1319, 1388, 1549, 1669, 1984, 2044
SfcI	CTRYAG	3 cut(s)	345, 1630, 2013
Sfr274I	CTCGAG	1 cut(s)	1239
SfuI	TTCGAA	1 cut(s)	2310
SgrAI	CRCCGGYG	1 cut(s)	367
SinI	GGWCC	1 cut(s)	736
SlaI	CTCGAG	1 cut(s)	1239
SmiMI	CAYNNNNRTG	2 cut(s)	168, 965
SmlI	CTYRAG	3 cut(s)	756, 799, 1239
SmoI	CTYRAG	3 cut(s)	756, 799, 1239
SnaBI	TACGTA	1 cut(s)	773
SpeI	ACTAGT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	200, 450
SstI	GAGCTC	2 cut(s)	551, 1246
StyD4I	CCNGG	5 cut(s)	885, 1498, 2202, 2217, 2365
StyI	CCWWGG	3 cut(s)	304, 1869, 2519
TaaI	ACNGT	7 cut(s)	36, 349, 851, 1079, 1493, 1583, 2329
TaiI	ACGT	2 cut(s)	775, 1477
TaqI	TCGA	9 cut(s)	168, 204, 266, 784, 1240, 1663, 1909, 1973, 2310
TatI	WGTACW	2 cut(s)	1522, 2342
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	3 cut(s)	971, 1917, 2429
Tru1I	TTAA	4 cut(s)	1571, 1604, 1652, 2384
Tru9I	TTAA	4 cut(s)	1571, 1604, 1652, 2384
TscAI	CASTG	3 cut(s)	39, 1076, 2502
TseFI	GTSAC	1 cut(s)	1780
Tsp45I	GTSAC	1 cut(s)	1780
TspRI	CASTG	3 cut(s)	39, 1076, 2502
VpaK11BI	GGWCC	1 cut(s)	736
XapI	RAATTY	3 cut(s)	1261, 1540, 1721
XceI	RCATGY	1 cut(s)	1325
XcmI	CCANNNNNNNNNTGG	2 cut(s)	35, 964
XhoI	CTCGAG	1 cut(s)	1239
XmnI	GAANNNNTTC	3 cut(s)	564, 975, 2361
XspI	CTAG	2 cut(s)	200, 450
Zsp2I	ATGCAT	1 cut(s)	1999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.