Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011252

Physical Location & Seq

Genomic Coordinates Forward (+)

13381901 .. 13389080

Gene Structure 7180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGGCGGAGGCTGCAAAGAGAGACCTCCAAACACCCAAGAGATCCTCCAGGTCCCGATCCGATCCCAAATCCTCATCGCCTTCTCTCCCTCCTCCTCCTACTCCACTCTCCGCCACTCCTCGCCGATCCACGCGCCGCACCTCCCTACACTTCGATGCCCTCCCTCCCCCTCCTCCTCCGACGACTACACTAGTCGAAGATCCGGCAAAGAAACCAAAGAAGAAGAGGAAAACCCCCAAATCTGGAGCCGACAATTCGACGATTGACCATGTCAACACCCCCAAATCTGCTGCCCAAGGCAAGAAATCGAAGCAAGAGGAGGAGGAAAAGTCGACTACAGTTGAAGCCGAGTTCTCGCCGGTGTCGCCGGAGCGATCCGAGAAGAAGAAAAGGAAGAGAGGCCATGAGAGGAAGGTGGTTACAACGCGCGGTGGTGTGGCTAGCAAGAAGAGGCAGGTGTTTTACAAGAAGGTTGTGTATGACGGGGGTGAGTTTGAGGTTGGTGATGATGTTTATGTGAAAAGGAGAGAGGATGCGAGCTCCGACGAGGAAGTGGTTCAGGTGGAGCAATGTAGGGTTTGCTTTAAGTCTGGGAAGGCTGTGATGATTGAATGCGATGATTGTTTGGGTGGGTTCCATTTGAAATGCTTGAAGCCTCCCTTGAAGGAGGTTCCTGAAGGAGATTGGGTTTGCGGTTTTTGTGAGGCTCGAAAATTGGGCAAAGAGGTCCAGCTTCCTACTCCCCCTCAAGGGAAGAAATTGCATAGGACATTTCGAGAGAAGCTTCTGTCAAGCGATTTGTGGGCTGCCCGCATTGAAAGTATATGGAAAGAAGTTGACGGTAGCTATTGGTGTCGGGTGCGTTGGTATATTATCCCGGAAGAGACTGCTGCCGGAAGACAAGCTCATAATCTGAGGAGGGAGATTTATCGCACAAATGATTTTGCCAACATTGAGATGGAATCTATTCTTCAACATTGTTTTGTGATGAACCCTAGAGAATATGCCAAAGCCAATGAAGGGGATGATGTCTTCTTATGCGAATATGAATATGATATTCACTGGTACAGTTTCAAGCGTCTTGCAGAAATTGACGATGATGAAAAGGATGATGATGATGATGATGCTGAGAGTGATGAAGATTGGAAACGTGGCAAAGAATCAGATTCTGATACGGAAGAAGATGTTGAGTTTGAAGAAGAGAGCACAAAGAATATACTGGCTAAACCATCTCGAGCTCATGAGTTGGCTGCAAATTCACATAAGGGGCGGTTCTTTGGACTTCAAAAGATTGGAATGAAGAAAATCCCCGAGCATGTTAGATGCCATAAGCAGACTGCTCTTGAAAAAGCAAAATCAACACTTCTGTTGGCATCATTGCCTAAGTCTTTACCTTGCAGGGATAAAGAAATGTTGGAGATTAGTGCATTCATCAAGGGTGCCATCTCTGATGATAAATGTCTTGGACGTTGCCTCTATATTCACGGTGTTCCTGGAACTGGAAAGACTATGAGTGTACTGGCAGTAATGAGGAATTTGAGGTCTGAAGTTGATGCCGGAAGTATAAGACCTTACTGTTTTGTGGAGATAAATGGTCTAAAGTTGGCAGCACCTGAGAATATCTACAGGGTTATATATGAAGCATTAAGTGGGCATCGAGTTGGTTGGAAAAAGGCTCTACACTTGCTAAATGAGCGATTTTCCGATGGAAAGAAATTCAGCAAAGAGGATGACAAACCTTGTATTCTTCTTATTGATGAACTTGATCTTCTTGTGACCAGAAACCAATCGGTTCTCTACAACATTCTTGACTGGCCTACTAAGCCACACTCAAAATTAGTTGTAATAGGCATAGCAAATACCATGGATCTTCCGGAAAAGTTGCTTCCACGTATTTCAAGTCGAATGGGAATCCAAAGGCTTTGCTTTGGCCCCTATAATTACCAGCAGCTTCAAGAGATCATTTCGAGTCGGCTTAGAGGAATTGATGCATTTGAAAAACAAGCTATAGAGTTCGCTTCAAGAAAGGTAGCAGCTATTTCAGGAGATGCTCGTCGTGCATTGGAAATATGCAGGCGTGCAGCTGAAATCAAAGATTACCGCATAAAGAAGCTAATTTCAACTCCCAACAGTGCTTCTAAAGAAAAAGCACTTGTTGGTATGGCAGAGGTTGAAGCAGCCATACAAGAAATGTTCCAGGCACCTCATATCCAGGTGATGAAAACTTGTTCCAAACTGGGTAAAATCTATTTGACTGCTATGGTGTATGAACTCTATAAAACAGGAATGGGTGAAACTACTTTTGAAAAGTTGGCAATGACAGTTTATAATCTGTGTACAAGCAATGGAGAAGCATTTCCTGGACATGATACGCTGTTAAAAGTCGGTTGTAAGCTTGGTGAATGCAGAATTATTCTATGTGAATCAGGAGCAAAGCACAGATTGCAGAAGTTACAGCTCAACTTTCCAAGCGACGATGTAGCATTTGCACTGAAGGAAACCAAGGAACTACCTTGGTTGGCCAAGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

844

Amino Acids

95.53

Weight (kDa)

8.71

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	191 - 234	3.2e-08	PHD-finger
BAH	PF01426	270 - 359	7e-11	BAH domain
AAA_16	PF13191	464 - 608	1.7e-07	AAA ATPase domain
AAA_22	PF13401	490 - 616	4.2e-08	AAA domain
AAA	PF00004	493 - 638	2.7e-17	ATPase family associated with various cellular activities (AAA)
Cdc6-ORC-like_ATPase_lid	PF22606	646 - 698	3.4e-08	Cdc6/ORC-like, ATPase lid domain
AAA_lid_10	PF17872	666 - 700	3.5e-10	AAA lid domain
WHD_Cdc6	PF09079	739 - 830	5.6e-08	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12620 AT4G14700
fragaria_vesca	FvH4_7g17041
malus_domestica	MD03G1176600.v1.1 MD11G1197200.v1.1
prunus_persica	Prupe.4G246200_v2.0.a1 Prupe.5G048200_v2.0.a1 Prupe.5G048200_v2.0.a1
pyrus_communis	pycom03g13390
rosa_chinensis	RchiOBHm_Chr3g0490671
rosa_laevigata	RLG00000022877
rosa_multiflora	Rmu_sc0006380.1_g000017 Rmu_sc0012075.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393320
rosa_rugosa	Rorug03G0245400
rosa_samantha	Rh3AG294600 Rh3BG330800 Rh3CG328300 Rh3DG327700
rosa_wichuraiana	Rw3G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2328
AarI	CACCTGC	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	445
AccB1I	GGYRCC	2 cut(s)	1439, 2200
AccI	GTMKAC	1 cut(s)	332
AccII	CGCG	3 cut(s)	133, 427, 429
AccIII	TCCGGA	1 cut(s)	1873
AciI	CCGC	8 cut(s)	5, 111, 136, 429, 693, 811, 1270, 2101
AclWI	GGATC	7 cut(s)	36, 51, 56, 120, 194, 369, 1875
AcoI	YGGCCR	1 cut(s)	2520
AcsI	RAATTY	3 cut(s)	1255, 1534, 1715
AcuI	CTGAAG	3 cut(s)	696, 1566, 2513
AfaI	GTAC	3 cut(s)	1067, 1518, 2338
AfiI	CCNNNNNNNGG	5 cut(s)	242, 749, 750, 1020, 1499
AhlI	ACTAGT	1 cut(s)	190
AjnI	CCWGG	5 cut(s)	47, 1492, 2196, 2211, 2359
Alw21I	GWGCWC	3 cut(s)	542, 1208, 1240
Alw26I	GTCTC	2 cut(s)	15, 878
AlwI	GGATC	7 cut(s)	36, 51, 56, 120, 194, 369, 1875
AlwNI	CAGNNNCTG	2 cut(s)	1169, 1613
Ama87I	CYCGRG	2 cut(s)	1233, 1310
Aor13HI	TCCGGA	1 cut(s)	1873
AoxI	GGCC	4 cut(s)	400, 1814, 1930, 2520
ApoI	RAATTY	3 cut(s)	1255, 1534, 1715
Asp700I	GAANNNNTTC	3 cut(s)	555, 966, 2355
AspLEI	GCGC	2 cut(s)	135, 429
AspS9I	GGNCC	3 cut(s)	51, 727, 1931
AsuC2I	CCSGG	1 cut(s)	878
AsuHPI	GGTGA	5 cut(s)	500, 515, 2227, 2303, 2411
AsuNHI	GCTAGC	1 cut(s)	440
AvaI	CYCGRG	2 cut(s)	1233, 1310
AvaII	GGWCC	2 cut(s)	51, 727
BalI	TGGCCA	1 cut(s)	2522
BanI	GGYRCC	2 cut(s)	1439, 2200
BanII	GRGCYC	2 cut(s)	542, 1240
BarI	GAAGNNNNNNTAC	2 cut(s)	2166, 2198
BbsI	GAAGAC	2 cut(s)	904, 1024
Bbv12I	GWGCWC	3 cut(s)	542, 1208, 1240
BbvI	GCAGC	9 cut(s)	277, 793, 877, 1237, 1619, 1960, 2045, 2093, 2189
BccI	CCATC	4 cut(s)	952, 1237, 1451, 1700
BciT130I	CCWGG	5 cut(s)	49, 1494, 2198, 2213, 2361
BcnI	CCSGG	1 cut(s)	878
BcoDI	GTCTC	2 cut(s)	15, 878
BcuI	ACTAGT	1 cut(s)	190
BfaI	CTAG	3 cut(s)	191, 441, 996
BfmI	CTRYAG	3 cut(s)	336, 1624, 2007
BfuAI	ACCTGC	1 cut(s)	445
Bme1390I	CCNGG	6 cut(s)	49, 878, 1494, 2198, 2213, 2361
Bme18I	GGWCC	2 cut(s)	51, 727
BmeT110I	CYCGRG	2 cut(s)	1233, 1310
BmgT120I	GGNCC	3 cut(s)	51, 727, 1931
BmiI	GGNNCC	7 cut(s)	53, 247, 635, 672, 1441, 1933, 2202
BmrFI	CCNGG	6 cut(s)	49, 878, 1494, 2198, 2213, 2361
BmrI	ACTGGG	1 cut(s)	2246
BmsI	GCATC	9 cut(s)	145, 523, 1114, 1313, 1382, 1543, 1663, 1978, 2038
BmtI	GCTAGC	1 cut(s)	444
BmuI	ACTGGG	1 cut(s)	2246
BpiI	GAAGAC	2 cut(s)	904, 1024
BpmI	CTGGAG	2 cut(s)	31, 264
BpuEI	CTTGAG	1 cut(s)	732
BpuMI	CCSGG	1 cut(s)	878
BsaAI	YACGTR	1 cut(s)	1892
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	295, 1863, 2502, 2513
BsaWI	WCCGGW	1 cut(s)	1873
BsaXI	ACNNNNNCTCC	4 cut(s)	314, 344, 672, 702
Bsc4I	CCNNNNNNNGG	5 cut(s)	242, 749, 750, 1020, 1499
Bse118I	RCCGGY	1 cut(s)	358
Bse1I	ACTGG	6 cut(s)	1067, 1224, 1504, 1524, 1817, 2241
Bse3DI	GCAATG	4 cut(s)	575, 1376, 2322, 2350
BseAI	TCCGGA	1 cut(s)	1873
BseBI	CCWGG	5 cut(s)	49, 1494, 2198, 2213, 2361
BseDI	CCNNGG	4 cut(s)	295, 1863, 2502, 2513
BseGI	GGATG	4 cut(s)	538, 1030, 1114, 1735
BseLI	CCNNNNNNNGG	5 cut(s)	242, 749, 750, 1020, 1499
BseMI	GCAATG	4 cut(s)	575, 1376, 2322, 2350
BseMII	CTCAG	3 cut(s)	905, 1119, 1605
BseNI	ACTGG	6 cut(s)	1067, 1224, 1504, 1524, 1817, 2241
BseRI	GAGGAG	8 cut(s)	81, 84, 108, 162, 165, 332, 335, 931
BseXI	GCAGC	9 cut(s)	277, 793, 877, 1237, 1619, 1960, 2045, 2093, 2189
BsgI	GTGCAG	1 cut(s)	2100
Bsh1236I	CGCG	3 cut(s)	133, 427, 429
BshFI	GGCC	4 cut(s)	402, 1816, 1932, 2522
BshNI	GGYRCC	2 cut(s)	1439, 2200
BsiHKAI	GWGCWC	3 cut(s)	542, 1208, 1240
BsiHKCI	CYCGRG	2 cut(s)	1233, 1310
BsiSI	CCGG	7 cut(s)	203, 359, 368, 878, 894, 1557, 1874
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	5 cut(s)	242, 749, 750, 1020, 1499
BsmAI	GTCTC	2 cut(s)	15, 878
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	3 cut(s)	617, 1427, 2408
BsnI	GGCC	4 cut(s)	402, 1816, 1932, 2522
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	2 cut(s)	1233, 1310
Bsp1286I	GDGCHC	3 cut(s)	542, 1208, 1240
Bsp13I	TCCGGA	1 cut(s)	1873
Bsp1407I	TGTACA	1 cut(s)	2336
Bsp143I	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1765, 1867, 1959
Bsp19I	CCATGG	1 cut(s)	1863
BspACI	CCGC	8 cut(s)	5, 111, 136, 429, 693, 811, 1270, 2101
BspANI	GGCC	4 cut(s)	402, 1816, 1932, 2522
BspCNI	CTCAG	3 cut(s)	906, 1120, 1606
BspEI	TCCGGA	1 cut(s)	1873
BspFNI	CGCG	3 cut(s)	133, 427, 429
BspHI	TCATGA	1 cut(s)	1240
BspLI	GGNNCC	7 cut(s)	53, 247, 635, 672, 1441, 1933, 2202
BspMI	ACCTGC	1 cut(s)	445
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	7 cut(s)	36, 51, 56, 120, 194, 369, 1875
BspT107I	GGYRCC	2 cut(s)	1439, 2200
BspTNI	GGTCTC	1 cut(s)	15
BsrDI	GCAATG	4 cut(s)	575, 1376, 2322, 2350
BsrFI	RCCGGY	1 cut(s)	358
BsrGI	TGTACA	1 cut(s)	2336
BsrI	ACTGG	6 cut(s)	1067, 1224, 1504, 1524, 1817, 2241
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	4 cut(s)	295, 1863, 2502, 2513
BssMI	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1765, 1867, 1959
BssT1I	CCWWGG	4 cut(s)	295, 1863, 2502, 2513
Bst2UI	CCWGG	5 cut(s)	49, 1494, 2198, 2213, 2361
Bst4CI	ACNGT	7 cut(s)	340, 842, 1070, 1487, 1577, 2132, 2323
Bst6I	CTCTTC	5 cut(s)	218, 389, 443, 876, 1194
BstAPI	GCANNNNNTGC	1 cut(s)	2443
BstAUI	TGTACA	1 cut(s)	2336
BstBAI	YACGTR	1 cut(s)	1892
BstC8I	GCNNGC	5 cut(s)	442, 538, 811, 2075, 2079
BstDEI	CTNAG	6 cut(s)	914, 1128, 1383, 1614, 1821, 1976
BstDSI	CCRYGG	1 cut(s)	1863
BstF5I	GGATG	4 cut(s)	538, 1030, 1114, 1735
BstFNI	CGCG	3 cut(s)	133, 427, 429
BstHHI	GCGC	2 cut(s)	135, 429
BstKTI	GATC	9 cut(s)	44, 59, 64, 128, 202, 377, 1768, 1870, 1962
BstMAI	GTCTC	2 cut(s)	15, 878
BstMBI	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1765, 1867, 1959
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 364, 1693, 1822, 2057, 2443
BstNI	CCWGG	5 cut(s)	49, 1494, 2198, 2213, 2361
BstNSI	RCATGY	1 cut(s)	1319
BstSCI	CCNGG	6 cut(s)	47, 876, 1492, 2196, 2211, 2359
BstSFI	CTRYAG	3 cut(s)	336, 1624, 2007
BstUI	CGCG	3 cut(s)	133, 427, 429
BstV1I	GCAGC	9 cut(s)	277, 793, 877, 1237, 1619, 1960, 2045, 2093, 2189
BstV2I	GAAGAC	2 cut(s)	904, 1024
BstX2I	RGATCY	3 cut(s)	41, 199, 1867
BstYI	RGATCY	3 cut(s)	41, 199, 1867
BsuRI	GGCC	4 cut(s)	402, 1816, 1932, 2522
BtgI	CCRYGG	1 cut(s)	1863
BtgZI	GCGATG	2 cut(s)	60, 630
BtsCI	GGATG	4 cut(s)	538, 1030, 1114, 1735
BtsIMutI	CAGTG	3 cut(s)	1060, 2137, 2489
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	5 cut(s)	442, 538, 811, 2075, 2079
CaiI	CAGNNNCTG	2 cut(s)	1169, 1613
CciI	TCATGA	1 cut(s)	1240
CfoI	GCGC	2 cut(s)	135, 429
Cfr10I	RCCGGY	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	51, 727, 1931
CseI	GACGC	1 cut(s)	1067
Csp6I	GTAC	3 cut(s)	1066, 1517, 2337
CviAII	CATG	6 cut(s)	269, 404, 1241, 1316, 1864, 2366
CviQI	GTAC	3 cut(s)	1066, 1517, 2337
DdeI	CTNAG	6 cut(s)	914, 1128, 1383, 1614, 1821, 1976
DpnI	GATC	9 cut(s)	43, 58, 63, 127, 201, 376, 1767, 1869, 1961
DpnII	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1765, 1867, 1959
EaeI	YGGCCR	1 cut(s)	2520
Eam1104I	CTCTTC	5 cut(s)	218, 389, 443, 876, 1194
EarI	CTCTTC	5 cut(s)	218, 389, 443, 876, 1194
EciI	GGCGGA	2 cut(s)	20, 100
Ecl136II	GAGCTC	2 cut(s)	540, 1238
Eco130I	CCWWGG	4 cut(s)	295, 1863, 2502, 2513
Eco24I	GRGCYC	2 cut(s)	542, 1240
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	51, 727
Eco53kI	GAGCTC	2 cut(s)	540, 1238
Eco57I	CTGAAG	3 cut(s)	696, 1566, 2513
Eco88I	CYCGRG	2 cut(s)	1233, 1310
EcoICRI	GAGCTC	2 cut(s)	540, 1238
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRII	CCWGG	5 cut(s)	47, 1492, 2196, 2211, 2359
EcoT14I	CCWWGG	4 cut(s)	295, 1863, 2502, 2513
EcoT22I	ATGCAT	1 cut(s)	1993
EcoT38I	GRGCYC	2 cut(s)	542, 1240
ErhI	CCWWGG	4 cut(s)	295, 1863, 2502, 2513
FaeI	CATG	6 cut(s)	272, 407, 1244, 1319, 1867, 2369
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	6 cut(s)	268, 403, 1240, 1315, 1863, 2365
FauI	CCCGC	1 cut(s)	818
FblI	GTMKAC	1 cut(s)	332
FokI	GGATG	4 cut(s)	545, 1037, 1121, 1742
FriOI	GRGCYC	2 cut(s)	542, 1240
FspBI	CTAG	3 cut(s)	191, 441, 996
GlaI	GCGC	2 cut(s)	134, 428
GsuI	CTGGAG	2 cut(s)	31, 264
HaeIII	GGCC	4 cut(s)	402, 1816, 1932, 2522
HapII	CCGG	7 cut(s)	203, 359, 368, 878, 894, 1557, 1874
HgaI	GACGC	1 cut(s)	1067
HhaI	GCGC	2 cut(s)	135, 429
Hin1II	CATG	6 cut(s)	272, 407, 1244, 1319, 1867, 2369
Hin6I	GCGC	2 cut(s)	133, 427
HinP1I	GCGC	2 cut(s)	133, 427
HincII	GTYRAC	3 cut(s)	274, 333, 838
HindII	GTYRAC	3 cut(s)	274, 333, 838
HindIII	AAGCTT	2 cut(s)	782, 2393
HinfI	GANTC	6 cut(s)	962, 1160, 1166, 1911, 1969, 2423
HpaII	CCGG	7 cut(s)	203, 359, 368, 878, 894, 1557, 1874
HphI	GGTGA	5 cut(s)	500, 515, 2227, 2303, 2411
Hpy166II	GTNNAC	5 cut(s)	274, 333, 838, 1517, 2337
Hpy8I	GTNNAC	5 cut(s)	274, 333, 838, 1517, 2337
Hpy99I	CGWCG	5 cut(s)	184, 262, 548, 2058, 2477
HpyAV	CCTTC	8 cut(s)	90, 406, 463, 589, 658, 671, 1013, 2488
HpyCH4III	ACNGT	7 cut(s)	340, 842, 1070, 1487, 1577, 2132, 2323
HpyCH4IV	ACGT	3 cut(s)	1150, 1468, 1891
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 364, 1693, 1822, 2057, 2443
HpyF3I	CTNAG	6 cut(s)	914, 1128, 1383, 1614, 1821, 1976
HpySE526I	ACGT	3 cut(s)	1150, 1468, 1891
Hsp92II	CATG	6 cut(s)	272, 407, 1244, 1319, 1867, 2369
HspAI	GCGC	2 cut(s)	133, 427
Kpn2I	TCCGGA	1 cut(s)	1873
Kzo9I	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1765, 1867, 1959
LmnI	GCTCC	5 cut(s)	245, 370, 545, 565, 2429
Lsp1109I	GCAGC	9 cut(s)	277, 793, 877, 1237, 1619, 1960, 2045, 2093, 2189
LweI	GCATC	9 cut(s)	145, 523, 1114, 1313, 1382, 1543, 1663, 1978, 2038
MaeI	CTAG	3 cut(s)	191, 441, 996
MaeII	ACGT	3 cut(s)	1150, 1468, 1891
MaeIII	GTNAC	3 cut(s)	418, 1774, 2451
MalI	GATC	9 cut(s)	43, 58, 63, 127, 201, 376, 1767, 1869, 1961
MboI	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1765, 1867, 1959
MflI	RGATCY	3 cut(s)	41, 199, 1867
MhlI	GDGCHC	3 cut(s)	542, 1208, 1240
MlsI	TGGCCA	1 cut(s)	2522
MluNI	TGGCCA	1 cut(s)	2522
MlyI	GAGTC	1 cut(s)	1978
MmeI	TCCRAC	4 cut(s)	203, 567, 1395, 1646
Mox20I	TGGCCA	1 cut(s)	2522
Mph1103I	ATGCAT	1 cut(s)	1993
MroI	TCCGGA	1 cut(s)	1873
MroXI	GAANNNNTTC	3 cut(s)	555, 966, 2355
MscI	TGGCCA	1 cut(s)	2522
MseI	TTAA	3 cut(s)	585, 1646, 2378
MslI	CAYNNNNRTG	2 cut(s)	153, 956
Msp20I	TGGCCA	1 cut(s)	2522
MspA1I	CMGCKG	1 cut(s)	2084
MspI	CCGG	7 cut(s)	203, 359, 368, 878, 894, 1557, 1874
MspR9I	CCNGG	6 cut(s)	49, 878, 1494, 2198, 2213, 2361
Mva1269I	GAATGC	3 cut(s)	617, 1427, 2408
MvaI	CCWGG	5 cut(s)	49, 1494, 2198, 2213, 2361
MvnI	CGCG	3 cut(s)	133, 427, 429
MwoI	GCNNNNNNNGC	6 cut(s)	11, 364, 1693, 1822, 2057, 2443
NciI	CCSGG	1 cut(s)	878
NcoI	CCATGG	1 cut(s)	1863
NdeII	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1765, 1867, 1959
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	6 cut(s)	272, 407, 1244, 1319, 1867, 2369
NlaIV	GGNNCC	7 cut(s)	53, 247, 635, 672, 1441, 1933, 2202
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	1774
NsiI	ATGCAT	1 cut(s)	1993
NspI	RCATGY	1 cut(s)	1319
PaeR7I	CTCGAG	1 cut(s)	1233
PagI	TCATGA	1 cut(s)	1240
PaqCI	CACCTGC	1 cut(s)	445
PctI	GAATGC	3 cut(s)	617, 1427, 2408
PdmI	GAANNNNTTC	3 cut(s)	555, 966, 2355
PfeI	GAWTC	5 cut(s)	962, 1160, 1166, 1911, 2423
PflFI	GACNNNGTC	1 cut(s)	269
PfoI	TCCNGGA	3 cut(s)	876, 1492, 2359
PleI	GAGTC	1 cut(s)	1977
PpsI	GAGTC	1 cut(s)	1977
Ppu21I	YACGTR	1 cut(s)	1892
PpuMI	RGGWCCY	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	2328
Psp124BI	GAGCTC	2 cut(s)	542, 1240
Psp5II	RGGWCCY	1 cut(s)	51
Psp6I	CCWGG	5 cut(s)	47, 1492, 2196, 2211, 2359
PspGI	CCWGG	5 cut(s)	47, 1492, 2196, 2211, 2359
PspN4I	GGNNCC	7 cut(s)	53, 247, 635, 672, 1441, 1933, 2202
PspPI	GGNCC	3 cut(s)	51, 727, 1931
PspPPI	RGGWCCY	1 cut(s)	51
PstNI	CAGNNNCTG	2 cut(s)	1169, 1613
PsuI	RGATCY	3 cut(s)	41, 199, 1867
PsyI	GACNNNGTC	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	2084
RsaI	GTAC	3 cut(s)	1067, 1518, 2338
RsaNI	GTAC	3 cut(s)	1066, 1517, 2337
RseI	CAYNNNNRTG	2 cut(s)	153, 956
SacI	GAGCTC	2 cut(s)	542, 1240
SalI	GTCGAC	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	585, 1646, 2378
Sau3AI	GATC	9 cut(s)	41, 56, 61, 125, 199, 374, 1765, 1867, 1959
Sau96I	GGNCC	3 cut(s)	51, 727, 1931
SchI	GAGTC	1 cut(s)	1978
ScrFI	CCNGG	6 cut(s)	49, 878, 1494, 2198, 2213, 2361
SduI	GDGCHC	3 cut(s)	542, 1208, 1240
SfaNI	GCATC	9 cut(s)	145, 523, 1114, 1313, 1382, 1543, 1663, 1978, 2038
SfcI	CTRYAG	3 cut(s)	336, 1624, 2007
Sfr274I	CTCGAG	1 cut(s)	1233
SgrAI	CRCCGGYG	1 cut(s)	358
SinI	GGWCC	2 cut(s)	51, 727
SlaI	CTCGAG	1 cut(s)	1233
SmiMI	CAYNNNNRTG	2 cut(s)	153, 956
SmlI	CTYRAG	2 cut(s)	747, 1233
SmoI	CTYRAG	2 cut(s)	747, 1233
SpeI	ACTAGT	1 cut(s)	190
SsiI	CCGC	8 cut(s)	5, 111, 136, 429, 693, 811, 1270, 2101
SspMI	CTAG	3 cut(s)	191, 441, 996
SstI	GAGCTC	2 cut(s)	542, 1240
StyD4I	CCNGG	6 cut(s)	47, 876, 1492, 2196, 2211, 2359
StyI	CCWWGG	4 cut(s)	295, 1863, 2502, 2513
TaaI	ACNGT	7 cut(s)	340, 842, 1070, 1487, 1577, 2132, 2323
TaiI	ACGT	3 cut(s)	1153, 1471, 1894
TatI	WGTACW	2 cut(s)	1516, 2336
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	5 cut(s)	962, 1160, 1166, 1911, 2423
Tru1I	TTAA	3 cut(s)	585, 1646, 2378
Tru9I	TTAA	3 cut(s)	585, 1646, 2378
TscAI	CASTG	3 cut(s)	1067, 2137, 2496
TseFI	GTSAC	1 cut(s)	1774
Tsp45I	GTSAC	1 cut(s)	1774
TspGWI	ACGGA	1 cut(s)	1190
TspRI	CASTG	3 cut(s)	1067, 2137, 2496
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	51, 727
XapI	RAATTY	3 cut(s)	1255, 1534, 1715
XceI	RCATGY	1 cut(s)	1319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	955
XhoI	CTCGAG	1 cut(s)	1233
XmiI	GTMKAC	1 cut(s)	332
XmnI	GAANNNNTTC	3 cut(s)	555, 966, 2355
XspI	CTAG	3 cut(s)	191, 441, 996
Zsp2I	ATGCAT	1 cut(s)	1993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.