Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011252

Physical Location & Seq

Genomic Coordinates Forward (+)

22953357 .. 22955324

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0245400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCAGGAATTGCGTTTGGCACTTGCTGTTCAACTATCTCTTCCACCAGCAATTTCCGCACTTCTTGGTTGAAACTTGAGACTAGTACTCATCGTGGAGGAACCATCTTAAAGAAGCCAAACAATGTTAGAACTTTGGCAATTAGAGCAGAAGTGAACTTTGTAAGTGCAGACGAAGCTAAAGAACTAATTGCGGAAGGATATACGGTTATTGATGTTCGGGACAAATCTCAATATGATCGAGCTCATATCAAATCATGTTATCATGTGCCTCTTTTCATCGAAAATCAAGACAATGACATCGGCACAATTGTAAAGAGGACTGTGCACAACAATTTCTCAGGTCTGTTCTTCGGGTTACCTTTCACTAAACCCAACCCTGAGTTTGTACAATCTGTTAAAGGCCAGTTTTCACCTCAGAGTAAACTGTTACTGGTGTGCCAGGAAGGATTGAGGTCTGCAGCTGCTGCTAGTAGGTTGGAGCAGGCTGGTTTCCAAGACATAGCATGTATAACATCAGGGCTGCAAAAAGTAAAACCAGGAGCATTTGATGCTGTTGGATCCACTGAGTTGCAAGATGCTGGCAAAGCAGGTTTGATCACAGTACAAGGAAAGATCTCAGCTGTACTTGGAACTGTACTAGTCTGTGCATATTTGTTCATCACCTTCTTCCCTGATCAAGCAGAGAAGCTACTTCAATTGGCTCCTACAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

238

Amino Acids

25.74

Weight (kDa)

8.5

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	56 - 178	9.2e-11	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12620 AT4G14700
fragaria_vesca	FvH4_7g17041
malus_domestica	MD03G1176600.v1.1 MD11G1197200.v1.1
prunus_persica	Prupe.4G246200_v2.0.a1 Prupe.5G048200_v2.0.a1 Prupe.5G048200_v2.0.a1
pyrus_communis	pycom03g13390
rosa_chinensis	RchiOBHm_Chr3g0490671
rosa_laevigata	RLG00000022877
rosa_multiflora	Rmu_sc0006380.1_g000017 Rmu_sc0012075.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393320
rosa_rugosa	Rorug03G0245400
rosa_samantha	Rh3AG294600 Rh3BG330800 Rh3CG328300 Rh3DG327700
rosa_wichuraiana	Rw3G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	581
AciI	CCGC	2 cut(s)	58, 194
AclWI	GGATC	2 cut(s)	555, 568
AfaI	GTAC	5 cut(s)	88, 390, 606, 627, 639
AgsI	TTSAA	3 cut(s)	33, 73, 698
AhlI	ACTAGT	2 cut(s)	83, 640
AjnI	CCWGG	2 cut(s)	441, 538
AluBI	AGCT	5 cut(s)	179, 245, 464, 623, 691
AluI	AGCT	5 cut(s)	179, 245, 464, 623, 691
Alw21I	GWGCWC	2 cut(s)	247, 330
Alw26I	GTCTC	1 cut(s)	74
Alw44I	GTGCAC	1 cut(s)	326
AlwI	GGATC	2 cut(s)	555, 568
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	1 cut(s)	403
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	4 cut(s)	461, 464, 467, 523
AsuHPI	GGTGA	2 cut(s)	405, 655
BaeGI	GKGCMC	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	2 cut(s)	247, 330
BbvI	GCAGC	4 cut(s)	451, 454, 473, 510
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	2 cut(s)	443, 540
BclI	TGATCA	2 cut(s)	597, 676
BcoDI	GTCTC	1 cut(s)	74
BcuI	ACTAGT	2 cut(s)	83, 640
BfaI	CTAG	4 cut(s)	84, 471, 641, 715
BfmI	CTRYAG	2 cut(s)	459, 708
BfuAI	ACCTGC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	4 cut(s)	462, 465, 468, 524
BlsI	GCNGC	4 cut(s)	463, 466, 469, 525
BmcAI	AGTACT	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	443, 540
BmiI	GGNNCC	3 cut(s)	103, 562, 705
BmrFI	CCNGG	2 cut(s)	443, 540
BmsI	GCATC	2 cut(s)	541, 568
BpuEI	CTTGAG	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	406, 438
BseBI	CCWGG	2 cut(s)	443, 540
BseMII	CTCAG	5 cut(s)	354, 372, 431, 558, 633
BseNI	ACTGG	2 cut(s)	406, 438
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	4 cut(s)	451, 454, 473, 510
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	405
BsiHKAI	GWGCWC	2 cut(s)	247, 330
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	247, 330
Bsp1407I	TGTACA	1 cut(s)	388
Bsp143I	GATC	5 cut(s)	238, 560, 597, 615, 676
BspACI	CCGC	2 cut(s)	58, 194
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	5 cut(s)	353, 373, 430, 559, 632
BspLI	GGNNCC	3 cut(s)	103, 562, 705
BspMAI	CTGCAG	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	581
BspPI	GGATC	2 cut(s)	555, 568
BsrGI	TGTACA	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	406, 438
BssMI	GATC	5 cut(s)	238, 560, 597, 615, 676
Bst2UI	CCWGG	2 cut(s)	443, 540
Bst4CI	ACNGT	5 cut(s)	208, 325, 429, 604, 637
Bst6I	CTCTTC	1 cut(s)	46
BstAPI	GCANNNNNTGC	3 cut(s)	11, 467, 551
BstAUI	TGTACA	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	486, 583
BstDEI	CTNAG	5 cut(s)	340, 381, 417, 567, 619
BstEII	GGTNACC	1 cut(s)	357
BstKTI	GATC	5 cut(s)	241, 563, 600, 618, 679
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	5 cut(s)	238, 560, 597, 615, 676
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 57, 146, 176, 467, 551, 587
BstNI	CCWGG	2 cut(s)	443, 540
BstNSI	RCATGY	1 cut(s)	510
BstPI	GGTNACC	1 cut(s)	357
BstSCI	CCNGG	2 cut(s)	441, 538
BstSFI	CTRYAG	2 cut(s)	459, 708
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	451, 454, 473, 510
BstX2I	RGATCY	2 cut(s)	560, 615
BstYI	RGATCY	2 cut(s)	560, 615
BsuRI	GGCC	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	564
BveI	ACCTGC	1 cut(s)	581
Cac8I	GCNNGC	2 cut(s)	486, 583
CaiI	CAGNNNCTG	1 cut(s)	467
Csp6I	GTAC	5 cut(s)	87, 389, 605, 626, 638
CviAII	CATG	3 cut(s)	258, 266, 507
CviQI	GTAC	5 cut(s)	87, 389, 605, 626, 638
DdeI	CTNAG	5 cut(s)	340, 381, 417, 567, 619
DpnI	GATC	5 cut(s)	240, 562, 599, 617, 678
DpnII	GATC	5 cut(s)	238, 560, 597, 615, 676
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	245
EcoO65I	GGTNACC	1 cut(s)	357
EcoRII	CCWGG	2 cut(s)	441, 538
EcoT38I	GRGCYC	1 cut(s)	247
FaeI	CATG	3 cut(s)	261, 269, 510
FaiI	YATR	9 cut(s)	204, 237, 249, 259, 267, 503, 508, 512, 652
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	3 cut(s)	257, 265, 506
FbaI	TGATCA	2 cut(s)	597, 676
Fnu4HI	GCNGC	4 cut(s)	462, 465, 468, 524
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	4 cut(s)	462, 465, 468, 524
FspBI	CTAG	4 cut(s)	84, 471, 641, 715
GluI	GCNGC	4 cut(s)	462, 465, 468, 524
HaeIII	GGCC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	261, 269, 510
HphI	GGTGA	2 cut(s)	405, 655
Hpy166II	GTNNAC	3 cut(s)	157, 328, 425
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	2 cut(s)	221, 290
Hpy8I	GTNNAC	3 cut(s)	157, 328, 425
HpyAV	CCTTC	3 cut(s)	191, 440, 676
HpyCH4III	ACNGT	5 cut(s)	208, 325, 429, 604, 637
HpyCH4V	TGCA	6 cut(s)	170, 328, 461, 526, 574, 650
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 57, 146, 176, 467, 551, 587
HpyF3I	CTNAG	5 cut(s)	340, 381, 417, 567, 619
Hsp92II	CATG	3 cut(s)	261, 269, 510
Ksp22I	TGATCA	2 cut(s)	597, 676
Kzo9I	GATC	5 cut(s)	238, 560, 597, 615, 676
LmnI	GCTCC	3 cut(s)	481, 542, 709
Lsp1109I	GCAGC	4 cut(s)	451, 454, 473, 510
LweI	GCATC	2 cut(s)	541, 568
MaeI	CTAG	4 cut(s)	84, 471, 641, 715
MaeIII	GTNAC	2 cut(s)	357, 429
MalI	GATC	5 cut(s)	240, 562, 599, 617, 678
MboI	GATC	5 cut(s)	238, 560, 597, 615, 676
MboII	GAAGA	3 cut(s)	33, 343, 661
MfeI	CAATTG	2 cut(s)	309, 698
MflI	RGATCY	2 cut(s)	560, 615
MhlI	GDGCHC	2 cut(s)	247, 330
MluCI	AATT	7 cut(s)	9, 52, 141, 189, 309, 334, 698
MmeI	TCCRAC	2 cut(s)	459, 538
MnlI	CCTC	5 cut(s)	92, 282, 312, 426, 447
MseI	TTAA	2 cut(s)	110, 399
MspA1I	CMGCKG	2 cut(s)	464, 623
MspR9I	CCNGG	2 cut(s)	443, 540
MunI	CAATTG	2 cut(s)	309, 698
MvaI	CCWGG	2 cut(s)	443, 540
MwoI	GCNNNNNNNGC	7 cut(s)	11, 57, 146, 176, 467, 551, 587
NdeII	GATC	5 cut(s)	238, 560, 597, 615, 676
NlaIII	CATG	3 cut(s)	261, 269, 510
NlaIV	GGNNCC	3 cut(s)	103, 562, 705
NspI	RCATGY	1 cut(s)	510
PkrI	GCNGC	4 cut(s)	463, 466, 469, 525
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	441, 538
PspEI	GGTNACC	1 cut(s)	357
PspGI	CCWGG	2 cut(s)	441, 538
PspN4I	GGNNCC	3 cut(s)	103, 562, 705
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	2 cut(s)	560, 615
PvuII	CAGCTG	2 cut(s)	464, 623
RsaI	GTAC	5 cut(s)	88, 390, 606, 627, 639
RsaNI	GTAC	5 cut(s)	87, 389, 605, 626, 638
SacI	GAGCTC	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	110, 399
SatI	GCNGC	4 cut(s)	462, 465, 468, 524
Sau3AI	GATC	5 cut(s)	238, 560, 597, 615, 676
ScaI	AGTACT	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	443, 540
SduI	GDGCHC	2 cut(s)	247, 330
SfaNI	GCATC	2 cut(s)	541, 568
SfcI	CTRYAG	2 cut(s)	459, 708
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SpeI	ACTAGT	2 cut(s)	83, 640
Sse9I	AATT	7 cut(s)	9, 52, 141, 189, 309, 334, 698
SsiI	CCGC	2 cut(s)	58, 194
SspMI	CTAG	4 cut(s)	84, 471, 641, 715
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	2 cut(s)	441, 538
TaaI	ACNGT	5 cut(s)	208, 325, 429, 604, 637
TaqI	TCGA	2 cut(s)	241, 282
TasI	AATT	7 cut(s)	9, 52, 141, 189, 309, 334, 698
TatI	WGTACW	5 cut(s)	86, 388, 604, 625, 637
Tru1I	TTAA	2 cut(s)	110, 399
Tru9I	TTAA	2 cut(s)	110, 399
TscAI	CASTG	1 cut(s)	571
TseI	GCWGC	4 cut(s)	461, 464, 467, 523
TspDTI	ATGAA	2 cut(s)	268, 649
TspRI	CASTG	1 cut(s)	571
VneI	GTGCAC	1 cut(s)	326
XceI	RCATGY	1 cut(s)	510
XspI	CTAG	4 cut(s)	84, 471, 641, 715
ZrmI	AGTACT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.