Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011252

Physical Location & Seq

Genomic Coordinates Reverse (-)

28325160 .. 28332929

Gene Structure 7770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1197200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGACTATGACGAGGAAAGCATAAAAAGTATACTAGCTAAACCATTTCGAGCTCATGAGTTGGCTGCAAATTCACAGAAAGGGCGGTTCTTTGGACTTCAAAAGATAGGAATGAAGAAAATCCTTGAAGAAATGTTGGAAATAACTACATTTATCAAAGATTCAATCTCTGATGATAAGTGTTTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGTACTGGAAAGACAAGGAGTGTACTTGCAATAATGAAGAATCTAAGGTCTGAAGTTGATGCAGGAAGTATAAGACCCTACTGTTTTGTGGAGATAAATGGTCTAAAATTGGTGTCACCAGAGAATATCTACAGGGTTATATATGAAGCCTTAAGTGGGCACAGAGTTGGTTGGAAAAAGGCTCTCCACTTGCTAAATAAGCAGTTCTCTGAAGGAAAGAAAATTGGTAAAGAGGATGACAAGCCTTGTATTCTTCTCGTTCGATACAACATTCTTGACTGGCCTACTAAGCCACACTCAAAATTAGTTGTAATAGGCATAGCAAATACCATGGATCTTCCTGAGAAGTTGCTTCCTCGTATTTCAAGTCGTATGGGAATCCAAAGGCTTTGCTTTGGCCCCTATAATTACCAACAGCTTGAAGAAATAGTTTCGAGCCACCTTAAAGGAATAAATGCATTCAAACGACAAGCTATAGAGTTTGCTTCAAGAAAGGCCAGTTTTTTGTTCTGTGTGGCAGCTATTTCAGGGGATGCACGTCGTGCACTGGAGATATGCAGACGTGCGGCAGAAATCACAGACTATAGACTGAAGAAACTAACCTCAACTCCTAATGATGCTTCCGAAGGAAAAACCCTTGTTGGTATGGCAGAAGTTGAAGCAGCCATCCAAGAAATTTGTAAGCTCGGCGAATGCAGAATTATTCTATGTGAATCAGGAGCAAAGCACAGGTTGCAGAAGTTGCAGCTCAATTTCCCAAGCGACGATGTGGCGTTTGCACTCAAGGACAACAAGGAGCCACCTTGGTTGGCCAAGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

347

Amino Acids

38.99

Weight (kDa)

9.2

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	67 - 199	3.4e-07	ATPase family associated with various cellular activities (AAA)
Cdc6-ORC-like_ATPase_lid	PF22606	207 - 265	1.9e-06	Cdc6/ORC-like, ATPase lid domain
AAA_lid_10	PF17872	226 - 266	3.5e-07	AAA lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12620 AT4G14700
fragaria_vesca	FvH4_7g17041
malus_domestica	MD03G1176600.v1.1 MD11G1197200.v1.1
prunus_persica	Prupe.4G246200_v2.0.a1 Prupe.5G048200_v2.0.a1 Prupe.5G048200_v2.0.a1
pyrus_communis	pycom03g13390
rosa_chinensis	RchiOBHm_Chr3g0490671
rosa_laevigata	RLG00000022877
rosa_multiflora	Rmu_sc0006380.1_g000017 Rmu_sc0012075.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393320
rosa_rugosa	Rorug03G0245400
rosa_samantha	Rh3AG294600 Rh3BG330800 Rh3CG328300 Rh3DG327700
rosa_wichuraiana	Rw3G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	31
AciI	CCGC	2 cut(s)	85, 782
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	1 cut(s)	1026
AcsI	RAATTY	2 cut(s)	70, 891
AcuI	CTGAAG	3 cut(s)	288, 447, 827
AdeI	CACNNNGTG	1 cut(s)	758
AfaI	GTAC	3 cut(s)	200, 220, 240
AfiI	CCNNNNNNNGG	2 cut(s)	221, 372
AflII	CTTAAG	1 cut(s)	367
AgsI	TTSAA	8 cut(s)	101, 128, 165, 582, 638, 679, 705, 875
AjiI	CACGTC	2 cut(s)	755, 779
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	7 cut(s)	38, 53, 634, 689, 737, 901, 964
AluI	AGCT	7 cut(s)	38, 53, 634, 689, 737, 901, 964
Alw21I	GWGCWC	2 cut(s)	55, 763
Alw44I	GTGCAC	1 cut(s)	759
AlwI	GGATC	1 cut(s)	558
AoxI	GGCC	4 cut(s)	497, 613, 711, 1026
ApaLI	GTGCAC	1 cut(s)	759
ApeKI	GCWGC	4 cut(s)	65, 734, 878, 961
ApoI	RAATTY	2 cut(s)	70, 891
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	324
BaeGI	GKGCMC	2 cut(s)	378, 763
BalI	TGGCCA	1 cut(s)	1028
BanII	GRGCYC	1 cut(s)	55
Bbv12I	GWGCWC	2 cut(s)	55, 763
BbvI	GCAGC	4 cut(s)	52, 746, 890, 973
BccI	CCATC	1 cut(s)	890
BciT130I	CCWGG	1 cut(s)	216
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	3 cut(s)	346, 690, 799
BfrI	CTTAAG	1 cut(s)	367
BisI	GCNGC	5 cut(s)	66, 735, 783, 879, 962
BlsI	GCNGC	5 cut(s)	67, 736, 784, 880, 963
Bme1390I	CCNGG	1 cut(s)	216
BmgBI	CACGTC	2 cut(s)	755, 779
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	2 cut(s)	616, 1014
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	3 cut(s)	265, 739, 823
BpmI	CTGGAG	1 cut(s)	785
BpuEI	CTTGAG	1 cut(s)	983
BsaJI	CCNNGG	2 cut(s)	546, 1019
BsaXI	ACNNNNNCTCC	2 cut(s)	808, 838
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 372
Bse1I	ACTGG	4 cut(s)	226, 500, 714, 768
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	546, 1019
BseGI	GGATG	3 cut(s)	457, 754, 882
BseLI	CCNNNNNNNGG	2 cut(s)	221, 372
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	4 cut(s)	226, 500, 714, 768
BseSI	GKGCMC	2 cut(s)	378, 763
BseXI	GCAGC	4 cut(s)	52, 746, 890, 973
BshFI	GGCC	4 cut(s)	499, 615, 713, 1028
BsiHKAI	GWGCWC	2 cut(s)	55, 763
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	221, 372
BsmFI	GGGAC	1 cut(s)	201
BsmI	GAATGC	2 cut(s)	674, 914
BsnI	GGCC	4 cut(s)	499, 615, 713, 1028
Bsp1286I	GDGCHC	3 cut(s)	55, 378, 763
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	550
Bsp19I	CCATGG	1 cut(s)	546
BspACI	CCGC	2 cut(s)	85, 782
BspANI	GGCC	4 cut(s)	499, 615, 713, 1028
BspCNI	CTCAG	1 cut(s)	550
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	616, 1014
BspPI	GGATC	1 cut(s)	558
BspTI	CTTAAG	1 cut(s)	367
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	4 cut(s)	226, 500, 714, 768
BssECI	CCNNGG	2 cut(s)	546, 1019
BssMI	GATC	1 cut(s)	550
BssNAI	GTATAC	1 cut(s)	32
BssT1I	CCWWGG	2 cut(s)	546, 1019
Bst1107I	GTATAC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	299
BstAFI	CTTAAG	1 cut(s)	367
BstAPI	GCANNNNNTGC	3 cut(s)	758, 949, 958
BstAUI	TGTACA	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	260, 504, 558
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	3 cut(s)	457, 754, 882
BstKTI	GATC	1 cut(s)	553
BstMBI	GATC	1 cut(s)	550
BstMWI	GCNNNNNNNGC	5 cut(s)	415, 505, 758, 949, 958
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	3 cut(s)	346, 690, 799
BstSLI	GKGCMC	2 cut(s)	378, 763
BstV1I	GCAGC	4 cut(s)	52, 746, 890, 973
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BstZ17I	GTATAC	1 cut(s)	32
BsuRI	GGCC	4 cut(s)	499, 615, 713, 1028
BtgI	CCRYGG	1 cut(s)	546
BtrI	CACGTC	2 cut(s)	755, 779
BtsCI	GGATG	3 cut(s)	457, 754, 882
BtsIMutI	CAGTG	1 cut(s)	761
CciI	TCATGA	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	614
Csp6I	GTAC	3 cut(s)	199, 219, 239
CspCI	CAANNNNNGTGG	2 cut(s)	1005, 1040
CviAII	CATG	3 cut(s)	56, 206, 547
CviQI	GTAC	3 cut(s)	199, 219, 239
DdeI	CTNAG	3 cut(s)	260, 504, 558
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
DraIII	CACNNNGTG	1 cut(s)	758
EaeI	YGGCCR	1 cut(s)	1026
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	546, 1019
Eco24I	GRGCYC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	53
Eco57I	CTGAAG	3 cut(s)	288, 447, 827
EcoICRI	GAGCTC	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	2 cut(s)	546, 1019
EcoT22I	ATGCAT	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	546, 1019
FaeI	CATG	3 cut(s)	59, 209, 550
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	3 cut(s)	55, 205, 546
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	5 cut(s)	66, 735, 783, 879, 962
FokI	GGATG	3 cut(s)	464, 761, 869
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	5 cut(s)	66, 735, 783, 879, 962
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	5 cut(s)	66, 735, 783, 879, 962
GsuI	CTGGAG	1 cut(s)	785
HaeIII	GGCC	4 cut(s)	499, 615, 713, 1028
Hin1II	CATG	3 cut(s)	59, 209, 550
HinfI	GANTC	4 cut(s)	161, 256, 594, 929
HphI	GGTGA	1 cut(s)	324
Hpy166II	GTNNAC	3 cut(s)	32, 239, 761
Hpy188I	TCNGA	5 cut(s)	172, 268, 427, 841, 1040
Hpy188III	TCNNGA	5 cut(s)	56, 491, 557, 705, 933
Hpy8I	GTNNAC	3 cut(s)	32, 239, 761
Hpy99I	CGWCG	2 cut(s)	759, 983
HpyAV	CCTTC	2 cut(s)	422, 836
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	3 cut(s)	190, 754, 778
HpyF10VI	GCNNNNNNNGC	5 cut(s)	415, 505, 758, 949, 958
HpyF3I	CTNAG	3 cut(s)	260, 504, 558
HpySE526I	ACGT	3 cut(s)	190, 754, 778
Hsp92II	CATG	3 cut(s)	59, 209, 550
Kzo9I	GATC	1 cut(s)	550
LmnI	GCTCC	2 cut(s)	935, 1012
Lsp1109I	GCAGC	4 cut(s)	52, 746, 890, 973
LweI	GCATC	3 cut(s)	265, 739, 823
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	3 cut(s)	190, 754, 778
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	1 cut(s)	552
MboI	GATC	1 cut(s)	550
MboII	GAAGA	7 cut(s)	127, 140, 265, 461, 545, 650, 820
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	3 cut(s)	55, 378, 763
MlsI	TGGCCA	1 cut(s)	1028
MluCI	AATT	8 cut(s)	70, 323, 438, 518, 622, 891, 915, 967
MluNI	TGGCCA	1 cut(s)	1028
MmeI	TCCRAC	2 cut(s)	117, 368
MnlI	CCTC	4 cut(s)	7, 442, 582, 829
Mox20I	TGGCCA	1 cut(s)	1028
Mph1103I	ATGCAT	1 cut(s)	676
MscI	TGGCCA	1 cut(s)	1028
MseI	TTAA	2 cut(s)	368, 660
Msp20I	TGGCCA	1 cut(s)	1028
MspCI	CTTAAG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	216
Mva1269I	GAATGC	2 cut(s)	674, 914
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	5 cut(s)	415, 505, 758, 949, 958
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	3 cut(s)	59, 209, 550
NlaIV	GGNNCC	2 cut(s)	616, 1014
NmeAIII	GCCGAG	1 cut(s)	882
NmuCI	GTSAC	1 cut(s)	330
NsiI	ATGCAT	1 cut(s)	676
PagI	TCATGA	1 cut(s)	55
PctI	GAATGC	2 cut(s)	674, 914
PfeI	GAWTC	4 cut(s)	161, 256, 594, 929
PkrI	GCNGC	5 cut(s)	67, 736, 784, 880, 963
Psp124BI	GAGCTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	616, 1014
PspPI	GGNCC	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	3 cut(s)	200, 220, 240
RsaNI	GTAC	3 cut(s)	199, 219, 239
SacI	GAGCTC	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	368, 660
SatI	GCNGC	5 cut(s)	66, 735, 783, 879, 962
Sau3AI	GATC	1 cut(s)	550
Sau96I	GGNCC	1 cut(s)	614
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	3 cut(s)	55, 378, 763
SfaNI	GCATC	3 cut(s)	265, 739, 823
SfcI	CTRYAG	3 cut(s)	346, 690, 799
SmlI	CTYRAG	2 cut(s)	367, 998
SmoI	CTYRAG	2 cut(s)	367, 998
Sse9I	AATT	8 cut(s)	70, 323, 438, 518, 622, 891, 915, 967
SsiI	CCGC	2 cut(s)	85, 782
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	2 cut(s)	546, 1019
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	3 cut(s)	193, 757, 781
TaqI	TCGA	3 cut(s)	49, 478, 650
TasI	AATT	8 cut(s)	70, 323, 438, 518, 622, 891, 915, 967
TatI	WGTACW	2 cut(s)	198, 238
TauI	GCSGC	1 cut(s)	785
TfiI	GAWTC	4 cut(s)	161, 256, 594, 929
Tru1I	TTAA	2 cut(s)	368, 660
Tru9I	TTAA	2 cut(s)	368, 660
TscAI	CASTG	1 cut(s)	768
TseFI	GTSAC	1 cut(s)	330
TseI	GCWGC	4 cut(s)	65, 734, 878, 961
Tsp45I	GTSAC	1 cut(s)	330
TspDTI	ATGAA	4 cut(s)	128, 194, 266, 375
TspRI	CASTG	1 cut(s)	768
Vha464I	CTTAAG	1 cut(s)	367
VneI	GTGCAC	1 cut(s)	759
XapI	RAATTY	2 cut(s)	70, 891
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.