MD03G1272200.v1.1

Endonuclease/Exonuclease/phosphatase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
35535710 .. 35539603
3894 bp
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UTR
Exon/CDS
Intron
MD03G1272200.v1.1.491

Sequence Viewer

Length: 1518 bp
ATGCTCTCTCTAACTCCCACCAACAAAAACACCACCACAATGCTCAAACTCCTCAGCAGGAAGCTCCTCCGCCTCTGCTCCCGCCTCCGCTGGCCGCTCTGCCGCCGCTCCCGCCCCAAAGTCGTCATAAAAGTTTTCGGGAAAACAAGCTCCAGAAAATCCCAACCCGAAAATGAAGCCAATGGCACTCATGCGCCGGCGGCAGTACACCCCAATACCGACTTAAAAAAAGAGCGGCCGATTCGGGTGGCGACTTTCAACGCCGCCCTCTTCTCAATGGCGCCGGCGGTTCCCAAAGCCGAGAAATTCGGGAACTTGGACGGCGAAAATGGAGGTAGTAGCTTGACGATCCATAAACACGTCAGTCGAACAAAGTCTTCGGGAAGCGAACGTCCGAAGAGTATTCTGAAACAGAGTCCTCTGCATCCGAATTCGATGAACAACTCGGAGAATCTCACGAAACAGCAGAAGTTCTCGAAATCCAAGTTAAGGGTTTCGATCAATCTTCCGGATAACGAGATTTCCCTGCTGAAAAACCGGCAATTGAGCTTTTCGGAAGGCAGAGCAAAGGAAGATGCTTTCTCTCCCGTGACCGGAAAATCGCCTCTGAGATCGTCGAGTGTGAGGATTTCGGGAGTTTTGAGAAGTGGGGCGACGGCAGATGGAGATTTGCACAGAAGTCATCGGACGGTTCTTGAAGTTTTGAGAGAGCTGGATGCTGATGTTCTGGCGCTGCAGGATGTGAAGGCGGAGGAGGAGAAGGATATGAAACCGCTGTCAGACTTGGCGGCGGCGTTGGGGATGAATTATGTTTTTGCCGAGAGCTGGGCGCCGGAGTACGGCAACGCCATCTTGTCGAAATGGCCGATTAAGCGGTCCAAGGTCGAGAAAATCTTCGATGACACCGATTTCAGGAATGTCCTGAAGGCCACCATTGATGTTCCTGAAGCAGGAGAAGTCAACTTTCATTGCACCCACCTCGATCATCTTGATGAGAGTTGGAGGATGAGGCAGATTAATGCTATAATCCAATCAAGCAATGAGCCCCACATCTTGGCTGGAGACCTCAATTCTTTGGATGAGTCAGACTACTCTCAAGAAAGATGGACTGATATTGTAAAGTATTATGAGGATATGGGTAAACCAAGGCCCAAGGTTGAAGTAATGAGATACTTGAAGAGCAAGCAGTACACAGATGCAAAGGACTTTGAAGGAGAATATGAGTCAGTGGTTATGATTGCCAAAGGCCAAAGTGTGCAGGGAACATGCAAGTACGGAACGAGAGTAGATTATATATTAGCATCTGCGAACTCACCTTACAAATTTGTTCCTGGATCATACTCAGTGTTTTCTTCCAAGGGGACATCAGATCATCATATAGTAAGAGTTGATGTTGTAAAAGTGGATAATTGTGGTGAAGAAAATAACAGCAGAAGAAGGCAGCTGAAGCAAAAAGTTACCAAGATAACAAACCCTACTTCCCAGTCAAAAGGAATATGGAAAATCCCACATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

506

Amino Acids

56.69

Weight (kDa)

9.54

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos_PGAP2IP PF23226 220 - 358 7.9e-06 PGAP2IP, C-terminal nuclease-like domain
Exo_endo_phos PF03372 223 - 458 8.1e-15 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 280, 829
AccB7I CCANNNNNTGG 1 cut(s) 1054
AccBSI CCGCTC 3 cut(s) 97, 108, 235
AccIII TCCGGA 1 cut(s) 508
AclWI GGATC 2 cut(s) 343, 1342
AcoI YGGCCR 3 cut(s) 92, 236, 863
AcsI RAATTY 3 cut(s) 305, 430, 1322
AcuI CTGAAG 3 cut(s) 944, 966, 1466
AcyI GRCGYC 2 cut(s) 281, 830
AfaI GTAC 4 cut(s) 207, 839, 1190, 1274
AfiI CCNNNNNNNGG 7 cut(s) 489, 593, 825, 839, 912, 950, 1054
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 5 cut(s) 259, 698, 1160, 1177, 1211
AjiI CACGTC 1 cut(s) 361
AjnI CCWGG 1 cut(s) 1330
AluBI AGCT 7 cut(s) 64, 150, 342, 549, 712, 825, 1444
AluI AGCT 7 cut(s) 64, 150, 342, 549, 712, 825, 1444
Alw26I GTCTC 1 cut(s) 1056
AlwI GGATC 2 cut(s) 343, 1342
Aor13HI TCCGGA 1 cut(s) 508
AoxI GGCC 6 cut(s) 92, 236, 863, 927, 1148, 1246
ApeKI GCWGC 2 cut(s) 733, 1441
ApoI RAATTY 3 cut(s) 305, 430, 1322
AseI ATTAAT 1 cut(s) 1017
Asp700I GAANNNNTTC 1 cut(s) 893
AspLEI GCGC 4 cut(s) 196, 283, 733, 832
AspS9I GGNCC 2 cut(s) 876, 1149
AsuHPI GGTGA 2 cut(s) 1305, 1427
AvaII GGWCC 1 cut(s) 876
BanI GGYRCC 2 cut(s) 280, 829
BanII GRGCYC 1 cut(s) 1047
BbsI GAAGAC 1 cut(s) 369
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 720, 1453
BccI CCATC 3 cut(s) 656, 857, 1098
BceAI ACGGC 3 cut(s) 337, 672, 856
BcgI CGANNNNNNTGC 2 cut(s) 961, 995
BciT130I CCWGG 1 cut(s) 1332
BcoDI GTCTC 1 cut(s) 1056
BfmI CTRYAG 1 cut(s) 734
BfoI RGCGCY 3 cut(s) 284, 734, 833
Bme1390I CCNGG 1 cut(s) 1332
Bme18I GGWCC 1 cut(s) 876
BmgBI CACGTC 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 876, 1149
BmiI GGNNCC 3 cut(s) 282, 291, 831
BmrFI CCNGG 1 cut(s) 1332
BmrI ACTGGG 1 cut(s) 1477
BmsI GCATC 5 cut(s) 433, 565, 706, 1186, 1310
BmuI ACTGGG 1 cut(s) 1477
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 2 cut(s) 136, 1080
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 1080
BsaHI GRCGYC 2 cut(s) 281, 830
BsaI GGTCTC 1 cut(s) 1056
BsaJI CCNNGG 4 cut(s) 879, 1145, 1152, 1356
BsaWI WCCGGW 2 cut(s) 508, 593
Bsc4I CCNNNNNNNGG 7 cut(s) 489, 593, 825, 839, 912, 950, 1054
Bse118I RCCGGY 3 cut(s) 196, 283, 537
Bse1I ACTGG 1 cut(s) 1483
Bse3DI GCAATG 2 cut(s) 967, 1045
BseAI TCCGGA 1 cut(s) 508
BseBI CCWGG 1 cut(s) 1332
BseDI CCNNGG 4 cut(s) 879, 1145, 1152, 1356
BseGI GGATG 6 cut(s) 424, 721, 745, 807, 1011, 1084
BseLI CCNNNNNNNGG 7 cut(s) 489, 593, 825, 839, 912, 950, 1054
BseMI GCAATG 2 cut(s) 967, 1045
BseMII CTCAG 3 cut(s) 67, 599, 1356
BseNI ACTGG 1 cut(s) 1483
BseRI GAGGAG 4 cut(s) 41, 56, 767, 770
BseX3I CGGCCG 1 cut(s) 236
BseXI GCAGC 2 cut(s) 720, 1453
BseYI CCCAGC 1 cut(s) 825
BsgI GTGCAG 1 cut(s) 1277
Bsh1285I CGRYCG 1 cut(s) 239
BshFI GGCC 6 cut(s) 94, 238, 865, 929, 1150, 1248
BshNI GGYRCC 2 cut(s) 280, 829
BsiEI CGRYCG 1 cut(s) 239
BsiSI CCGG 6 cut(s) 197, 284, 509, 538, 594, 833
BslFI GGGAC 1 cut(s) 1375
BslI CCNNNNNNNGG 7 cut(s) 489, 593, 825, 839, 912, 950, 1054
BsmAI GTCTC 1 cut(s) 1056
BsmFI GGGAC 1 cut(s) 1375
BsnI GGCC 6 cut(s) 94, 238, 865, 929, 1150, 1248
Bso31I GGTCTC 1 cut(s) 1056
Bsp1286I GDGCHC 1 cut(s) 1047
Bsp13I TCCGGA 1 cut(s) 508
Bsp143I GATC 6 cut(s) 348, 498, 611, 982, 1334, 1369
BspANI GGCC 6 cut(s) 94, 238, 865, 929, 1150, 1248
BspCNI CTCAG 3 cut(s) 66, 600, 1355
BspEI TCCGGA 1 cut(s) 508
BspLI GGNNCC 3 cut(s) 282, 291, 831
BspMAI CTGCAG 1 cut(s) 738
BspPI GGATC 2 cut(s) 343, 1342
BspQI GCTCTTC 1 cut(s) 1172
BspT107I GGYRCC 2 cut(s) 280, 829
BspTNI GGTCTC 1 cut(s) 1056
BsrBI CCGCTC 3 cut(s) 97, 108, 235
BsrDI GCAATG 2 cut(s) 967, 1045
BsrFI RCCGGY 3 cut(s) 196, 283, 537
BsrI ACTGG 1 cut(s) 1483
BssAI RCCGGY 3 cut(s) 196, 283, 537
BssECI CCNNGG 4 cut(s) 879, 1145, 1152, 1356
BssMI GATC 6 cut(s) 348, 498, 611, 982, 1334, 1369
BssNI GRCGYC 2 cut(s) 281, 830
BssT1I CCWWGG 4 cut(s) 879, 1145, 1152, 1356
Bst2UI CCWGG 1 cut(s) 1332
Bst4CI ACNGT 1 cut(s) 691
Bst6I CTCTTC 3 cut(s) 275, 392, 1172
BstACI GRCGYC 2 cut(s) 281, 830
BstC8I GCNNGC 4 cut(s) 92, 198, 285, 1184
BstDEI CTNAG 3 cut(s) 53, 608, 1342
BstENI CCTNNNNNAGG 1 cut(s) 948
BstF5I GGATG 6 cut(s) 424, 721, 745, 807, 1011, 1084
BstH2I RGCGCY 3 cut(s) 284, 734, 833
BstHHI GCGC 4 cut(s) 196, 283, 733, 832
BstKTI GATC 6 cut(s) 351, 501, 614, 985, 1337, 1372
BstMAI GTCTC 1 cut(s) 1056
BstMBI GATC 6 cut(s) 348, 498, 611, 982, 1334, 1369
BstMCI CGRYCG 1 cut(s) 239
BstMWI GCNNNNNNNGC 4 cut(s) 111, 200, 871, 1447
BstNI CCWGG 1 cut(s) 1332
BstNSI RCATGY 1 cut(s) 1269
BstSCI CCNGG 1 cut(s) 1330
BstSFI CTRYAG 1 cut(s) 734
BstV1I GCAGC 2 cut(s) 720, 1453
BstV2I GAAGAC 1 cut(s) 369
BstZI CGGCCG 1 cut(s) 236
BsuRI GGCC 6 cut(s) 94, 238, 865, 929, 1150, 1248
BtrI CACGTC 1 cut(s) 361
BtsCI GGATG 6 cut(s) 424, 721, 745, 807, 1011, 1084
BtsIMutI CAGTG 2 cut(s) 1233, 1350
Cac8I GCNNGC 4 cut(s) 92, 198, 285, 1184
CfoI GCGC 4 cut(s) 196, 283, 733, 832
Cfr10I RCCGGY 3 cut(s) 196, 283, 537
Cfr13I GGNCC 2 cut(s) 876, 1149
Csp6I GTAC 4 cut(s) 206, 838, 1189, 1273
CviAII CATG 2 cut(s) 191, 1266
CviQI GTAC 4 cut(s) 206, 838, 1189, 1273
DdeI CTNAG 3 cut(s) 53, 608, 1342
DinI GGCGCC 2 cut(s) 282, 831
DpnI GATC 6 cut(s) 350, 500, 613, 984, 1336, 1371
DpnII GATC 6 cut(s) 348, 498, 611, 982, 1334, 1369
EaeI YGGCCR 3 cut(s) 92, 236, 863
EagI CGGCCG 1 cut(s) 236
Eam1104I CTCTTC 3 cut(s) 275, 392, 1172
EarI CTCTTC 3 cut(s) 275, 392, 1172
EciI GGCGGA 2 cut(s) 59, 764
EclXI CGGCCG 1 cut(s) 236
Eco130I CCWWGG 4 cut(s) 879, 1145, 1152, 1356
Eco24I GRGCYC 1 cut(s) 1047
Eco31I GGTCTC 1 cut(s) 1056
Eco47I GGWCC 1 cut(s) 876
Eco52I CGGCCG 1 cut(s) 236
Eco57I CTGAAG 3 cut(s) 944, 966, 1466
EcoNI CCTNNNNNAGG 1 cut(s) 948
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 1330
EcoT14I CCWWGG 4 cut(s) 879, 1145, 1152, 1356
EcoT38I GRGCYC 1 cut(s) 1047
EgeI GGCGCC 2 cut(s) 282, 831
EheI GGCGCC 2 cut(s) 282, 831
ErhI CCWWGG 4 cut(s) 879, 1145, 1152, 1356
FaeI CATG 2 cut(s) 194, 1269
FaqI GGGAC 1 cut(s) 1375
FatI CATG 2 cut(s) 190, 1265
FauI CCCGC 2 cut(s) 89, 119
FokI GGATG 6 cut(s) 411, 728, 752, 814, 1018, 1091
FriOI GRGCYC 1 cut(s) 1047
GlaI GCGC 4 cut(s) 195, 282, 732, 831
GsaI CCCAGC 1 cut(s) 829
GsuI CTGGAG 2 cut(s) 136, 1080
HaeII RGCGCY 3 cut(s) 284, 734, 833
HaeIII GGCC 6 cut(s) 94, 238, 865, 929, 1150, 1248
HapII CCGG 6 cut(s) 197, 284, 509, 538, 594, 833
HhaI GCGC 4 cut(s) 196, 283, 733, 832
Hin1I GRCGYC 2 cut(s) 281, 830
Hin1II CATG 2 cut(s) 194, 1269
Hin6I GCGC 4 cut(s) 194, 281, 731, 830
HinP1I GCGC 4 cut(s) 194, 281, 731, 830
HincII GTYRAC 1 cut(s) 961
HindII GTYRAC 1 cut(s) 961
HinfI GANTC 5 cut(s) 241, 415, 451, 1082, 1223
HpaII CCGG 6 cut(s) 197, 284, 509, 538, 594, 833
HphI GGTGA 2 cut(s) 1305, 1427
Hpy166II GTNNAC 4 cut(s) 208, 961, 1142, 1191
Hpy8I GTNNAC 4 cut(s) 208, 961, 1142, 1191
Hpy99I CGWCG 2 cut(s) 619, 658
HpyAV CCTTC 6 cut(s) 551, 739, 754, 919, 1205, 1431
HpyCH4III ACNGT 1 cut(s) 691
HpyCH4IV ACGT 2 cut(s) 360, 391
HpyCH4V TGCA 7 cut(s) 424, 673, 736, 972, 1199, 1258, 1269
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 200, 871, 1447
HpyF3I CTNAG 3 cut(s) 53, 608, 1342
HpySE526I ACGT 2 cut(s) 360, 391
Hsp92I GRCGYC 2 cut(s) 281, 830
Hsp92II CATG 2 cut(s) 194, 1269
HspAI GCGC 4 cut(s) 194, 281, 731, 830
KasI GGCGCC 2 cut(s) 280, 829
Kpn2I TCCGGA 1 cut(s) 508
KroI GCCGGC 2 cut(s) 196, 283
KroNI GCCGGC 2 cut(s) 198, 285
Kzo9I GATC 6 cut(s) 348, 498, 611, 982, 1334, 1369
LguI GCTCTTC 1 cut(s) 1172
LmnI GCTCC 4 cut(s) 69, 83, 113, 155
Lsp1109I GCAGC 2 cut(s) 720, 1453
LweI GCATC 5 cut(s) 433, 565, 706, 1186, 1310
MaeII ACGT 2 cut(s) 360, 391
MaeIII GTNAC 2 cut(s) 589, 1456
MalI GATC 6 cut(s) 350, 500, 613, 984, 1336, 1371
MbiI CCGCTC 3 cut(s) 97, 108, 235
MboI GATC 6 cut(s) 348, 498, 611, 982, 1334, 1369
MfeI CAATTG 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 1047
MluCI AATT 7 cut(s) 305, 430, 542, 805, 1069, 1322, 1408
Mly113I GGCGCC 2 cut(s) 281, 830
MlyI GAGTC 3 cut(s) 424, 1091, 1232
MmeI TCCRAC 1 cut(s) 980
MreI CGCCGGCG 2 cut(s) 196, 283
MroI TCCGGA 1 cut(s) 508
MroNI GCCGGC 2 cut(s) 196, 283
MroXI GAANNNNTTC 1 cut(s) 893
MseI TTAA 4 cut(s) 224, 488, 870, 1017
MslI CAYNNNNRTG 3 cut(s) 38, 990, 1513
MspA1I CMGCKG 3 cut(s) 90, 775, 1444
MspI CCGG 6 cut(s) 197, 284, 509, 538, 594, 833
MspR9I CCNGG 1 cut(s) 1332
MunI CAATTG 1 cut(s) 542
MvaI CCWGG 1 cut(s) 1332
MwoI GCNNNNNNNGC 4 cut(s) 111, 200, 871, 1447
NaeI GCCGGC 2 cut(s) 198, 285
NarI GGCGCC 2 cut(s) 281, 830
NdeII GATC 6 cut(s) 348, 498, 611, 982, 1334, 1369
NgoMIV GCCGGC 2 cut(s) 196, 283
NlaIII CATG 2 cut(s) 194, 1269
NlaIV GGNNCC 3 cut(s) 282, 291, 831
NmeAIII GCCGAG 2 cut(s) 325, 844
NmuCI GTSAC 1 cut(s) 589
NspI RCATGY 1 cut(s) 1269
PciSI GCTCTTC 1 cut(s) 1172
PcsI WCGNNNNNNNCGW 2 cut(s) 863, 903
PdiI GCCGGC 2 cut(s) 198, 285
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 2 cut(s) 241, 451
PflMI CCANNNNNTGG 1 cut(s) 1054
PfoI TCCNGGA 1 cut(s) 1330
PleI GAGTC 3 cut(s) 423, 1090, 1231
PluTI GGCGCC 2 cut(s) 284, 833
PpsI GAGTC 3 cut(s) 423, 1090, 1231
PshBI ATTAAT 1 cut(s) 1017
Psp6I CCWGG 1 cut(s) 1330
PspFI CCCAGC 1 cut(s) 825
PspGI CCWGG 1 cut(s) 1330
PspN4I GGNNCC 3 cut(s) 282, 291, 831
PspPI GGNCC 2 cut(s) 876, 1149
PsrI GAACNNNNNNTAC 2 cut(s) 1301, 1333
PstI CTGCAG 1 cut(s) 738
PvuII CAGCTG 1 cut(s) 1444
RsaI GTAC 4 cut(s) 207, 839, 1190, 1274
RsaNI GTAC 4 cut(s) 206, 838, 1189, 1273
RseI CAYNNNNRTG 3 cut(s) 38, 990, 1513
SapI GCTCTTC 1 cut(s) 1172
SaqAI TTAA 4 cut(s) 224, 488, 870, 1017
Sau3AI GATC 6 cut(s) 348, 498, 611, 982, 1334, 1369
Sau96I GGNCC 2 cut(s) 876, 1149
SchI GAGTC 3 cut(s) 424, 1091, 1232
ScrFI CCNGG 1 cut(s) 1332
SduI GDGCHC 1 cut(s) 1047
SfaNI GCATC 5 cut(s) 433, 565, 706, 1186, 1310
SfcI CTRYAG 1 cut(s) 734
SfoI GGCGCC 2 cut(s) 282, 831
SgrAI CRCCGGYG 2 cut(s) 196, 283
SinI GGWCC 1 cut(s) 876
SmiMI CAYNNNNRTG 3 cut(s) 38, 990, 1513
SmlI CTYRAG 1 cut(s) 1095
SmoI CTYRAG 1 cut(s) 1095
Sse9I AATT 7 cut(s) 305, 430, 542, 805, 1069, 1322, 1408
SspDI GGCGCC 2 cut(s) 280, 829
StyD4I CCNGG 1 cut(s) 1330
StyI CCWWGG 4 cut(s) 879, 1145, 1152, 1356
TaaI ACNGT 1 cut(s) 691
TaiI ACGT 2 cut(s) 363, 394
TaqI TCGA 9 cut(s) 367, 434, 476, 497, 617, 857, 885, 897, 981
TasI AATT 7 cut(s) 305, 430, 542, 805, 1069, 1322, 1408
TatI WGTACW 2 cut(s) 205, 1188
TauI GCSGC 8 cut(s) 97, 105, 108, 203, 238, 266, 791, 794
TfiI GAWTC 2 cut(s) 241, 451
Tru1I TTAA 4 cut(s) 224, 488, 870, 1017
Tru9I TTAA 4 cut(s) 224, 488, 870, 1017
TscAI CASTG 2 cut(s) 1233, 1350
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 2 cut(s) 733, 1441
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 5 cut(s) 189, 452, 782, 818, 956
TspGWI ACGGA 1 cut(s) 1290
TspRI CASTG 2 cut(s) 1233, 1350
Van91I CCANNNNNTGG 1 cut(s) 1054
VpaK11BI GGWCC 1 cut(s) 876
VspI ATTAAT 1 cut(s) 1017
XagI CCTNNNNNAGG 1 cut(s) 948
XapI RAATTY 3 cut(s) 305, 430, 1322
XceI RCATGY 1 cut(s) 1269
XcmI CCANNNNNNNNNTGG 1 cut(s) 1055
XmnI GAANNNNTTC 1 cut(s) 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.