Rh6AG336500

Endonuclease/Exonuclease/phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010396
Physical Location & Seq
Forward (+)
53687578 .. 53691409
3832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG336500.1

Sequence Viewer

Length: 1116 bp
ATGCTCAGAAACCTCCGCCGCCTCTGCTCCCGTCTTCGGTGGCCGTCCCGCCGCCGGTCCCGGAGCAAAGTCGTCATCAAACGGTTCTGGAAAACGAACTCCAAGTCCCAATTCGAGCACGAACCCACTTCCAACGGCTCGTCGTCTGCGACGGTTCACCCCAACGGCCAGCTGGGCGGGTCGGAAACTGAGAAGTCCAGGCCTATTCGGGTCGCCACTTTCAACGCCGCCCTGTTCTCAATGGCGCCGGCCATTCCGACGCCGGAGAAAATCGAGCAAGACGAAAATGGCGTCAAGGTCGTAAAGAACATAAATTCCAGAGCCAAATCGGCGACTGACCGACCCAAGAGTATCTTAAAGCAGTCGCCTTTACACCCAAATTTGATGAACAACTCAGAGAATCAAAAAACCCAACAGAAATTCGTGAAATCCAAGTTGAGGGTATCGATCAATTTGCCGGATAATGAAATCTCATTACTGAAAAGCAGACAGTTGAGCTTTGCTGAAGGGAGAGAAGTTGATGATTCTTCATCTTCTTTTTCCCCAAGTAGAGTTTCAAGAGGAAAAGGTCCATTGAAGCCTAGTTTGAGCTTTCCTAATAATATCGGGAACGGTGGTGGTGGTGATAATGGAGATTACTGTAGAAGCCACAGAACTGTTCTTGAGGTTCTGAGAGAATTGGATGCTGACATTTTGGCTCTGCAAGATGTGAAAGCAGAGGAGGAGAAGGAAATGAAGCCTCTTTCGGATTTGGCCGCCGCTTTGGGGATGAATTATGTCTTCGCCGAGAGTTGGGCGCCGGAGTACGGCAACGCCATCTTGTCAAAATGGCCGATAAAACGGTCTAAGGTTCAGAAAATCTTTGATGACACTGATTTCAGGAACGTTCTAAAAGCCACCATTGACGTACCCCAAGCCGGAGAAGTCAACTTCCACTGCACCCACCTTGATCATCTTGATGAGAACTGGCGGATGAGGCAGATTAACGCTATAATCCAATCGAGCAATGAGCCTCACATCTTGGCTGGAGGTCTCAATTCACTAGAGGAATCGGATTATTCTCAAGAAAGATGGACTGACATTGTAAAGGTGTCACATATAAACTTTTTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

371

Amino Acids

41.76

Weight (kDa)

9.44

Isoelectric Point (pI)

58.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 207 - 351 3.2e-11 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 244, 796
AciI CCGC 9 cut(s) 16, 19, 49, 52, 177, 228, 756, 759, 970
AclI AACGTT 1 cut(s) 885
AcoI YGGCCR 5 cut(s) 41, 166, 249, 753, 830
AcsI RAATTY 3 cut(s) 313, 379, 419
AcuI CTGAAG 1 cut(s) 525
AcyI GRCGYC 4 cut(s) 245, 260, 291, 797
AfaI GTAC 2 cut(s) 806, 909
AfiI CCNNNNNNNGG 7 cut(s) 36, 54, 438, 765, 792, 806, 917
AgsI TTSAA 3 cut(s) 223, 558, 577
AjnI CCWGG 1 cut(s) 197
AjuI GAANNNNNNNTTGG 4 cut(s) 95, 127, 538, 570
AloI GAACNNNNNNTCC 4 cut(s) 89, 121, 299, 331
AluBI AGCT 3 cut(s) 172, 498, 591
AluI AGCT 3 cut(s) 172, 498, 591
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 1037
AoxI GGCC 6 cut(s) 41, 166, 200, 249, 753, 830
ApoI RAATTY 3 cut(s) 313, 379, 419
ArsI GACNNNNNNTTYG 4 cut(s) 89, 121, 276, 308
AspLEI GCGC 2 cut(s) 247, 799
AspS9I GGNCC 2 cut(s) 57, 569
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 149, 635
AvaII GGWCC 2 cut(s) 57, 569
BanI GGYRCC 2 cut(s) 244, 796
BbsI GAAGAC 2 cut(s) 26, 772
Bbv12I GWGCWC 1 cut(s) 120
BccI CCATC 2 cut(s) 824, 1065
BceAI ACGGC 4 cut(s) 28, 151, 181, 823
BcgI CGANNNNNNTGC 2 cut(s) 436, 470
BciT130I CCWGG 1 cut(s) 199
BclI TGATCA 1 cut(s) 949
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 1037
BfaI CTAG 2 cut(s) 582, 1043
BfmI CTRYAG 1 cut(s) 640
BfoI RGCGCY 2 cut(s) 248, 800
BglI GCCNNNNNGGC 2 cut(s) 174, 329
BisI GCNGC 5 cut(s) 19, 52, 228, 756, 759
BlsI GCNGC 5 cut(s) 20, 53, 229, 757, 760
Bme1390I CCNGG 2 cut(s) 61, 199
Bme18I GGWCC 2 cut(s) 57, 569
BmgT120I GGNCC 2 cut(s) 57, 569
BmiI GGNNCC 3 cut(s) 59, 246, 798
BmrFI CCNGG 2 cut(s) 61, 199
BmsI GCATC 1 cut(s) 673
BpiI GAAGAC 2 cut(s) 26, 772
BpmI CTGGAG 1 cut(s) 1047
BpuEI CTTGAG 2 cut(s) 683, 1047
BpuMI CCSGG 1 cut(s) 61
Bsa29I ATCGAT 1 cut(s) 446
BsaHI GRCGYC 4 cut(s) 245, 260, 291, 797
BsaI GGTCTC 1 cut(s) 1037
Bsc4I CCNNNNNNNGG 7 cut(s) 36, 54, 438, 765, 792, 806, 917
Bse118I RCCGGY 2 cut(s) 54, 247
Bse1I ACTGG 1 cut(s) 971
Bse3DI GCAATG 1 cut(s) 1012
BseBI CCWGG 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 446
BseGI GGATG 3 cut(s) 688, 774, 978
BseLI CCNNNNNNNGG 7 cut(s) 36, 54, 438, 765, 792, 806, 917
BseMI GCAATG 1 cut(s) 1012
BseMII CTCAG 4 cut(s) 19, 180, 408, 662
BseNI ACTGG 1 cut(s) 971
BseRI GAGGAG 2 cut(s) 734, 737
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 922
BshFI GGCC 6 cut(s) 43, 168, 202, 251, 755, 832
BshNI GGYRCC 2 cut(s) 244, 796
BshVI ATCGAT 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 7 cut(s) 55, 61, 248, 263, 458, 800, 918
BslFI GGGAC 3 cut(s) 31, 43, 91
BslI CCNNNNNNNGG 7 cut(s) 36, 54, 438, 765, 792, 806, 917
BsmAI GTCTC 1 cut(s) 1037
BsmFI GGGAC 3 cut(s) 31, 43, 91
BsnI GGCC 6 cut(s) 43, 168, 202, 251, 755, 832
Bso31I GGTCTC 1 cut(s) 1037
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 447, 949
BspACI CCGC 9 cut(s) 16, 19, 49, 52, 177, 228, 756, 759, 970
BspANI GGCC 6 cut(s) 43, 168, 202, 251, 755, 832
BspCNI CTCAG 4 cut(s) 18, 181, 407, 663
BspDI ATCGAT 1 cut(s) 446
BspLI GGNNCC 3 cut(s) 59, 246, 798
BspT107I GGYRCC 2 cut(s) 244, 796
BspTNI GGTCTC 1 cut(s) 1037
BsrDI GCAATG 1 cut(s) 1012
BsrFI RCCGGY 2 cut(s) 54, 247
BsrI ACTGG 1 cut(s) 971
BssAI RCCGGY 2 cut(s) 54, 247
BssMI GATC 2 cut(s) 447, 949
BssNI GRCGYC 4 cut(s) 245, 260, 291, 797
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 7 cut(s) 84, 154, 492, 614, 641, 658, 843
BstACI GRCGYC 4 cut(s) 245, 260, 291, 797
BstC8I GCNNGC 2 cut(s) 170, 249
BstDEI CTNAG 5 cut(s) 5, 189, 394, 671, 846
BstF5I GGATG 3 cut(s) 688, 774, 978
BstH2I RGCGCY 2 cut(s) 248, 800
BstHHI GCGC 2 cut(s) 247, 799
BstKTI GATC 2 cut(s) 450, 952
BstMAI GTCTC 1 cut(s) 1037
BstMBI GATC 2 cut(s) 447, 949
BstMWI GCNNNNNNNGC 4 cut(s) 24, 174, 329, 976
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 59, 197
BstSFI CTRYAG 1 cut(s) 640
BstV2I GAAGAC 2 cut(s) 26, 772
Bsu15I ATCGAT 1 cut(s) 446
BsuRI GGCC 6 cut(s) 43, 168, 202, 251, 755, 832
BsuTUI ATCGAT 1 cut(s) 446
BtsCI GGATG 3 cut(s) 688, 774, 978
BtsI GCAGTG 1 cut(s) 934
BtsIMutI CAGTG 2 cut(s) 870, 934
Cac8I GCNNGC 2 cut(s) 170, 249
CfoI GCGC 2 cut(s) 247, 799
Cfr10I RCCGGY 2 cut(s) 54, 247
Cfr13I GGNCC 2 cut(s) 57, 569
ClaI ATCGAT 1 cut(s) 446
CseI GACGC 2 cut(s) 268, 280
Csp6I GTAC 2 cut(s) 805, 908
CviQI GTAC 2 cut(s) 805, 908
DdeI CTNAG 5 cut(s) 5, 189, 394, 671, 846
DinI GGCGCC 2 cut(s) 246, 798
DpnI GATC 2 cut(s) 449, 951
DpnII GATC 2 cut(s) 447, 949
EaeI YGGCCR 5 cut(s) 41, 166, 249, 753, 830
EciI GGCGGA 2 cut(s) 5, 985
Eco147I AGGCCT 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 1037
Eco47I GGWCC 2 cut(s) 57, 569
Eco57I CTGAAG 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 197
EgeI GGCGCC 2 cut(s) 246, 798
EheI GGCGCC 2 cut(s) 246, 798
FaiI YATR 5 cut(s) 311, 777, 992, 1098, 1100
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 3 cut(s) 31, 43, 91
FauI CCCGC 2 cut(s) 56, 170
FbaI TGATCA 1 cut(s) 949
Fnu4HI GCNGC 5 cut(s) 19, 52, 228, 756, 759
FokI GGATG 3 cut(s) 695, 781, 985
Fsp4HI GCNGC 5 cut(s) 19, 52, 228, 756, 759
FspBI CTAG 2 cut(s) 582, 1043
GlaI GCGC 2 cut(s) 246, 798
GluI GCNGC 5 cut(s) 19, 52, 228, 756, 759
GsaI CCCAGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 1047
HaeII RGCGCY 2 cut(s) 248, 800
HaeIII GGCC 6 cut(s) 43, 168, 202, 251, 755, 832
HapII CCGG 7 cut(s) 55, 61, 248, 263, 458, 800, 918
HgaI GACGC 2 cut(s) 268, 280
HhaI GCGC 2 cut(s) 247, 799
Hin1I GRCGYC 4 cut(s) 245, 260, 291, 797
Hin6I GCGC 2 cut(s) 245, 797
HinP1I GCGC 2 cut(s) 245, 797
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HinfI GANTC 3 cut(s) 400, 524, 1049
HpaII CCGG 7 cut(s) 55, 61, 248, 263, 458, 800, 918
HphI GGTGA 2 cut(s) 149, 635
Hpy166II GTNNAC 2 cut(s) 157, 928
Hpy188I TCNGA 8 cut(s) 8, 184, 258, 397, 672, 748, 855, 1054
Hpy188III TCNNGA 9 cut(s) 88, 318, 424, 558, 607, 662, 880, 956, 1064
Hpy8I GTNNAC 2 cut(s) 157, 928
Hpy99I CGWCG 3 cut(s) 145, 154, 262
HpyAV CCTTC 2 cut(s) 500, 721
HpyCH4III ACNGT 7 cut(s) 84, 154, 492, 614, 641, 658, 843
HpyCH4IV ACGT 2 cut(s) 885, 906
HpyCH4V TGCA 2 cut(s) 703, 939
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 174, 329, 976
HpyF3I CTNAG 5 cut(s) 5, 189, 394, 671, 846
HpySE526I ACGT 2 cut(s) 885, 906
Hsp92I GRCGYC 4 cut(s) 245, 260, 291, 797
HspAI GCGC 2 cut(s) 245, 797
KasI GGCGCC 2 cut(s) 244, 796
KroI GCCGGC 1 cut(s) 247
KroNI GCCGGC 1 cut(s) 249
Ksp22I TGATCA 1 cut(s) 949
Kzo9I GATC 2 cut(s) 447, 949
LmnI GCTCC 2 cut(s) 32, 63
LweI GCATC 1 cut(s) 673
MaeI CTAG 2 cut(s) 582, 1043
MaeII ACGT 2 cut(s) 885, 906
MaeIII GTNAC 1 cut(s) 1092
MalI GATC 2 cut(s) 449, 951
MboI GATC 2 cut(s) 447, 949
MboII GAAGA 4 cut(s) 26, 519, 525, 772
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 8 cut(s) 110, 313, 379, 419, 451, 677, 772, 1036
Mly113I GGCGCC 2 cut(s) 245, 797
MmeI TCCRAC 3 cut(s) 156, 162, 281
MroNI GCCGGC 1 cut(s) 247
MseI TTAA 2 cut(s) 356, 984
MslI CAYNNNNRTG 1 cut(s) 957
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 7 cut(s) 55, 61, 248, 263, 458, 800, 918
MspR9I CCNGG 2 cut(s) 61, 199
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 4 cut(s) 24, 174, 329, 976
NaeI GCCGGC 1 cut(s) 249
NarI GGCGCC 2 cut(s) 245, 797
NciI CCSGG 1 cut(s) 61
NdeII GATC 2 cut(s) 447, 949
NgoMIV GCCGGC 1 cut(s) 247
NlaIV GGNNCC 3 cut(s) 59, 246, 798
NmeAIII GCCGAG 1 cut(s) 811
NmuCI GTSAC 1 cut(s) 1092
PceI AGGCCT 1 cut(s) 202
PcsI WCGNNNNNNNCGW 3 cut(s) 146, 279, 288
PdiI GCCGGC 1 cut(s) 249
PfeI GAWTC 3 cut(s) 400, 524, 1049
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 5 cut(s) 20, 53, 229, 757, 760
PluTI GGCGCC 2 cut(s) 248, 800
Psp1406I AACGTT 1 cut(s) 885
Psp6I CCWGG 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 3 cut(s) 59, 246, 798
PspPI GGNCC 2 cut(s) 57, 569
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 2 cut(s) 806, 909
RsaNI GTAC 2 cut(s) 805, 908
RseI CAYNNNNRTG 1 cut(s) 957
SaqAI TTAA 2 cut(s) 356, 984
SatI GCNGC 5 cut(s) 19, 52, 228, 756, 759
Sau3AI GATC 2 cut(s) 447, 949
Sau96I GGNCC 2 cut(s) 57, 569
ScrFI CCNGG 2 cut(s) 61, 199
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 1 cut(s) 640
SfoI GGCGCC 2 cut(s) 246, 798
SinI GGWCC 2 cut(s) 57, 569
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 2 cut(s) 662, 1062
SmoI CTYRAG 2 cut(s) 662, 1062
Sse9I AATT 8 cut(s) 110, 313, 379, 419, 451, 677, 772, 1036
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 9 cut(s) 16, 19, 49, 52, 177, 228, 756, 759, 970
SspDI GGCGCC 2 cut(s) 244, 796
SspMI CTAG 2 cut(s) 582, 1043
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 59, 197
TaaI ACNGT 7 cut(s) 84, 154, 492, 614, 641, 658, 843
TaiI ACGT 2 cut(s) 888, 909
TaqI TCGA 4 cut(s) 114, 273, 446, 1001
TaqII GACCGA 1 cut(s) 354
TasI AATT 8 cut(s) 110, 313, 379, 419, 451, 677, 772, 1036
TauI GCSGC 5 cut(s) 21, 54, 230, 758, 761
TfiI GAWTC 3 cut(s) 400, 524, 1049
Tru1I TTAA 2 cut(s) 356, 984
Tru9I TTAA 2 cut(s) 356, 984
TscAI CASTG 2 cut(s) 877, 941
TseFI GTSAC 1 cut(s) 1092
Tsp45I GTSAC 1 cut(s) 1092
TspDTI ATGAA 6 cut(s) 401, 480, 519, 749, 785, 1099
TspRI CASTG 2 cut(s) 877, 941
VpaK11BI GGWCC 2 cut(s) 57, 569
XapI RAATTY 3 cut(s) 313, 379, 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XspI CTAG 2 cut(s) 582, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.