Rh6DG336800

Endonuclease/Exonuclease/phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010396
Physical Location & Seq
Forward (+)
54108103 .. 54111688
3586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG336800.1

Sequence Viewer

Length: 1116 bp
ATGCTCAGAAACCTCCGCCGTCTCTGCTCTCGTCTCCGGTGGCCGTCCCGCCGCCGGTCCCGGAACAAAGTCGTCATCAAACGGTTCTGGAAAACGAACTCCAAGTCCCAATTCGAGCACGAACCCACTTCCAACGGCTCGTCGTCGGCGACGGTTCACCCGAACGGCCAGCTGGGCGGGTCGGAAACTGAGAAGTCCAGGCCTATTCGGGTCGCCACTTTCAACGCCGCCCTGTTCTCAATGGCGCCGGCGATTCCGACGCCGGAGAAAATCGAGCAAGACGAAAATGGCGTCAAGGTCGTAAAGAACATAAATTCCAGAGCCAAATCGGCGACTGACCGACCCAAGAGTATCTTAAAGCAGTCGCCTTTACACCCAAATTTGATGAACAACTCAGAGAATCAAAAAACCCAACAGAAATTCGTCAAATCCAAGTTGAGGGTATCGATCAATTTGCCGGATAACGAAATCTCATTACTGAAAAGCAGACAGTTGAGCTTTGCTGAAGGGAGAGAAGTTGATGATTCTTCATCTTCTTTTTCCCCAAGTAGAGTTTCAAGAGGAAAAAGTCCATTGAAGCCTAGTGTGAGCTTTCCTAATAATATCGGGAACGGTGGTGGTGGTGATGGAGATTACTGTAGAAGCCACAGGACTGTTCTTGAGGTTCTGAGAGAATTGGATGCTGACATTTTGGCTCTGCAAGATGTGAAAGCAGAGGAGGAGAAGGAAATGAAGCCTCTTTCGGATTTGGCCGCCGCTTTGGGGATGAACTATGTCTTCGCCGAGAGTTGGGCGCCGGAGTACGGCAACGCCATCTTGTCCAAATGGCCGATAAAGCGGTCTAAGGTTCAGAAAATCTTTGATGACACTGATTTCAGGAACGTTCTAAAAGCCACCATTGACGTACCCCAAGCCGGAGAAGTCAACTTCCACTGCACCCACCTTGATCATCTTGATGAGAACTGGAGGATGAGGCAGATTAACGCTATAATCCAATCGAGCAATGAGCCTCACATCTTGGCTGGAGGTCTAAATTCACTAGAGGAATCGGATTATTCTCAAGAAAGATGGACTGACATTGTAAAGGTGTCAAATACAACCTTGTTCATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

371

Amino Acids

41.75

Weight (kDa)

9.44

Isoelectric Point (pI)

59.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 208 - 350 5.1e-11 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 244, 793
AciI CCGC 8 cut(s) 16, 49, 52, 177, 228, 753, 756, 838
AclI AACGTT 1 cut(s) 882
AcoI YGGCCR 4 cut(s) 41, 166, 750, 827
AcsI RAATTY 4 cut(s) 313, 379, 419, 1033
AcuI CTGAAG 1 cut(s) 525
AcyI GRCGYC 4 cut(s) 245, 260, 291, 794
AfaI GTAC 2 cut(s) 803, 906
AfiI CCNNNNNNNGG 6 cut(s) 54, 438, 762, 789, 803, 914
AgsI TTSAA 3 cut(s) 223, 558, 577
AjnI CCWGG 1 cut(s) 197
AjuI GAANNNNNNNTTGG 4 cut(s) 95, 127, 538, 570
AloI GAACNNNNNNTCC 4 cut(s) 89, 121, 299, 331
AluBI AGCT 3 cut(s) 172, 498, 591
AluI AGCT 3 cut(s) 172, 498, 591
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 26, 38
AoxI GGCC 5 cut(s) 41, 166, 200, 750, 827
ApoI RAATTY 4 cut(s) 313, 379, 419, 1033
ArsI GACNNNNNNTTYG 4 cut(s) 89, 121, 276, 308
AspLEI GCGC 2 cut(s) 247, 796
AspS9I GGNCC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 149, 635
AvaII GGWCC 1 cut(s) 57
BanI GGYRCC 2 cut(s) 244, 793
BbsI GAAGAC 1 cut(s) 769
Bbv12I GWGCWC 1 cut(s) 120
BccI CCATC 3 cut(s) 620, 821, 1062
BceAI ACGGC 5 cut(s) 3, 28, 151, 181, 820
BcgI CGANNNNNNTGC 2 cut(s) 436, 470
BciT130I CCWGG 1 cut(s) 199
BclI TGATCA 1 cut(s) 946
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 26, 38
BfaI CTAG 2 cut(s) 582, 1040
BfmI CTRYAG 1 cut(s) 637
BfoI RGCGCY 2 cut(s) 248, 797
BglI GCCNNNNNGGC 2 cut(s) 174, 329
BisI GCNGC 4 cut(s) 52, 228, 753, 756
BlsI GCNGC 4 cut(s) 53, 229, 754, 757
Bme1390I CCNGG 2 cut(s) 61, 199
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 3 cut(s) 59, 246, 795
BmrFI CCNGG 2 cut(s) 61, 199
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 769
BpmI CTGGAG 2 cut(s) 985, 1044
BpuEI CTTGAG 2 cut(s) 680, 1044
BpuMI CCSGG 1 cut(s) 61
Bsa29I ATCGAT 1 cut(s) 446
BsaHI GRCGYC 4 cut(s) 245, 260, 291, 794
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 6 cut(s) 54, 438, 762, 789, 803, 914
Bse118I RCCGGY 2 cut(s) 54, 247
Bse1I ACTGG 1 cut(s) 968
Bse3DI GCAATG 1 cut(s) 1009
BseBI CCWGG 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 446
BseGI GGATG 3 cut(s) 685, 771, 975
BseLI CCNNNNNNNGG 6 cut(s) 54, 438, 762, 789, 803, 914
BseMI GCAATG 1 cut(s) 1009
BseMII CTCAG 4 cut(s) 19, 180, 408, 659
BseNI ACTGG 1 cut(s) 968
BseRI GAGGAG 2 cut(s) 731, 734
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 919
BshFI GGCC 5 cut(s) 43, 168, 202, 752, 829
BshNI GGYRCC 2 cut(s) 244, 793
BshVI ATCGAT 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 8 cut(s) 37, 55, 61, 248, 263, 458, 797, 915
BslFI GGGAC 3 cut(s) 31, 43, 91
BslI CCNNNNNNNGG 6 cut(s) 54, 438, 762, 789, 803, 914
BsmAI GTCTC 2 cut(s) 26, 38
BsmBI CGTCTC 2 cut(s) 26, 38
BsmFI GGGAC 3 cut(s) 31, 43, 91
BsnI GGCC 5 cut(s) 43, 168, 202, 752, 829
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 447, 946
BspACI CCGC 8 cut(s) 16, 49, 52, 177, 228, 753, 756, 838
BspANI GGCC 5 cut(s) 43, 168, 202, 752, 829
BspCNI CTCAG 4 cut(s) 18, 181, 407, 660
BspDI ATCGAT 1 cut(s) 446
BspLI GGNNCC 3 cut(s) 59, 246, 795
BspT107I GGYRCC 2 cut(s) 244, 793
BsrDI GCAATG 1 cut(s) 1009
BsrFI RCCGGY 2 cut(s) 54, 247
BsrI ACTGG 1 cut(s) 968
BssAI RCCGGY 2 cut(s) 54, 247
BssMI GATC 2 cut(s) 447, 946
BssNI GRCGYC 4 cut(s) 245, 260, 291, 794
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 6 cut(s) 84, 154, 492, 614, 638, 655
BstACI GRCGYC 4 cut(s) 245, 260, 291, 794
BstC8I GCNNGC 2 cut(s) 170, 249
BstDEI CTNAG 5 cut(s) 5, 189, 394, 668, 843
BstF5I GGATG 3 cut(s) 685, 771, 975
BstH2I RGCGCY 2 cut(s) 248, 797
BstHHI GCGC 2 cut(s) 247, 796
BstKTI GATC 2 cut(s) 450, 949
BstMAI GTCTC 2 cut(s) 26, 38
BstMBI GATC 2 cut(s) 447, 946
BstMWI GCNNNNNNNGC 4 cut(s) 24, 174, 329, 835
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 59, 197
BstSFI CTRYAG 1 cut(s) 637
BstV2I GAAGAC 1 cut(s) 769
Bsu15I ATCGAT 1 cut(s) 446
BsuRI GGCC 5 cut(s) 43, 168, 202, 752, 829
BsuTUI ATCGAT 1 cut(s) 446
BtsCI GGATG 3 cut(s) 685, 771, 975
BtsI GCAGTG 1 cut(s) 931
BtsIMutI CAGTG 2 cut(s) 867, 931
Cac8I GCNNGC 2 cut(s) 170, 249
CfoI GCGC 2 cut(s) 247, 796
Cfr10I RCCGGY 2 cut(s) 54, 247
Cfr13I GGNCC 1 cut(s) 57
ClaI ATCGAT 1 cut(s) 446
CseI GACGC 2 cut(s) 268, 280
Csp6I GTAC 2 cut(s) 802, 905
CviQI GTAC 2 cut(s) 802, 905
DdeI CTNAG 5 cut(s) 5, 189, 394, 668, 843
DinI GGCGCC 2 cut(s) 246, 795
DpnI GATC 2 cut(s) 449, 948
DpnII GATC 2 cut(s) 447, 946
EaeI YGGCCR 4 cut(s) 41, 166, 750, 827
EciI GGCGGA 1 cut(s) 5
Eco147I AGGCCT 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 197
EgeI GGCGCC 2 cut(s) 246, 795
EheI GGCGCC 2 cut(s) 246, 795
Esp3I CGTCTC 2 cut(s) 26, 38
FaiI YATR 3 cut(s) 311, 774, 989
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 3 cut(s) 31, 43, 91
FauI CCCGC 2 cut(s) 56, 170
FbaI TGATCA 1 cut(s) 946
Fnu4HI GCNGC 4 cut(s) 52, 228, 753, 756
FokI GGATG 3 cut(s) 692, 778, 982
Fsp4HI GCNGC 4 cut(s) 52, 228, 753, 756
FspBI CTAG 2 cut(s) 582, 1040
GlaI GCGC 2 cut(s) 246, 795
GluI GCNGC 4 cut(s) 52, 228, 753, 756
GsaI CCCAGC 1 cut(s) 176
GsuI CTGGAG 2 cut(s) 985, 1044
HaeII RGCGCY 2 cut(s) 248, 797
HaeIII GGCC 5 cut(s) 43, 168, 202, 752, 829
HapII CCGG 8 cut(s) 37, 55, 61, 248, 263, 458, 797, 915
HgaI GACGC 2 cut(s) 268, 280
HhaI GCGC 2 cut(s) 247, 796
Hin1I GRCGYC 4 cut(s) 245, 260, 291, 794
Hin6I GCGC 2 cut(s) 245, 794
HinP1I GCGC 2 cut(s) 245, 794
HincII GTYRAC 1 cut(s) 925
HindII GTYRAC 1 cut(s) 925
HinfI GANTC 4 cut(s) 253, 400, 524, 1046
HpaII CCGG 8 cut(s) 37, 55, 61, 248, 263, 458, 797, 915
HphI GGTGA 2 cut(s) 149, 635
Hpy166II GTNNAC 2 cut(s) 157, 925
Hpy188I TCNGA 8 cut(s) 8, 184, 258, 397, 669, 745, 852, 1051
Hpy188III TCNNGA 8 cut(s) 88, 318, 558, 607, 659, 877, 953, 1061
Hpy8I GTNNAC 2 cut(s) 157, 925
Hpy99I CGWCG 4 cut(s) 145, 148, 154, 262
HpyAV CCTTC 2 cut(s) 500, 718
HpyCH4III ACNGT 6 cut(s) 84, 154, 492, 614, 638, 655
HpyCH4IV ACGT 2 cut(s) 882, 903
HpyCH4V TGCA 2 cut(s) 700, 936
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 174, 329, 835
HpyF3I CTNAG 5 cut(s) 5, 189, 394, 668, 843
HpySE526I ACGT 2 cut(s) 882, 903
Hsp92I GRCGYC 4 cut(s) 245, 260, 291, 794
HspAI GCGC 2 cut(s) 245, 794
KasI GGCGCC 2 cut(s) 244, 793
KroI GCCGGC 1 cut(s) 247
KroNI GCCGGC 1 cut(s) 249
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 2 cut(s) 447, 946
LweI GCATC 1 cut(s) 670
MaeI CTAG 2 cut(s) 582, 1040
MaeII ACGT 2 cut(s) 882, 903
MalI GATC 2 cut(s) 449, 948
MboI GATC 2 cut(s) 447, 946
MboII GAAGA 3 cut(s) 519, 525, 769
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 7 cut(s) 110, 313, 379, 419, 451, 674, 1033
Mly113I GGCGCC 2 cut(s) 245, 794
MmeI TCCRAC 3 cut(s) 156, 162, 281
MreI CGCCGGCG 1 cut(s) 247
MroNI GCCGGC 1 cut(s) 247
MseI TTAA 2 cut(s) 356, 981
MslI CAYNNNNRTG 1 cut(s) 954
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 8 cut(s) 37, 55, 61, 248, 263, 458, 797, 915
MspR9I CCNGG 2 cut(s) 61, 199
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 4 cut(s) 24, 174, 329, 835
NaeI GCCGGC 1 cut(s) 249
NarI GGCGCC 2 cut(s) 245, 794
NciI CCSGG 1 cut(s) 61
NdeII GATC 2 cut(s) 447, 946
NgoMIV GCCGGC 1 cut(s) 247
NlaIV GGNNCC 3 cut(s) 59, 246, 795
NmeAIII GCCGAG 1 cut(s) 808
PceI AGGCCT 1 cut(s) 202
PcsI WCGNNNNNNNCGW 4 cut(s) 146, 158, 279, 288
PdiI GCCGGC 1 cut(s) 249
PfeI GAWTC 4 cut(s) 253, 400, 524, 1046
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 4 cut(s) 53, 229, 754, 757
PluTI GGCGCC 2 cut(s) 248, 797
Psp1406I AACGTT 1 cut(s) 882
Psp6I CCWGG 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 3 cut(s) 59, 246, 795
PspPI GGNCC 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 2 cut(s) 803, 906
RsaNI GTAC 2 cut(s) 802, 905
RseI CAYNNNNRTG 1 cut(s) 954
SaqAI TTAA 2 cut(s) 356, 981
SatI GCNGC 4 cut(s) 52, 228, 753, 756
Sau3AI GATC 2 cut(s) 447, 946
Sau96I GGNCC 1 cut(s) 57
ScrFI CCNGG 2 cut(s) 61, 199
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 637
SfoI GGCGCC 2 cut(s) 246, 795
SgrAI CRCCGGYG 1 cut(s) 247
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 954
SmlI CTYRAG 2 cut(s) 659, 1059
SmoI CTYRAG 2 cut(s) 659, 1059
Sse9I AATT 7 cut(s) 110, 313, 379, 419, 451, 674, 1033
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 8 cut(s) 16, 49, 52, 177, 228, 753, 756, 838
SspDI GGCGCC 2 cut(s) 244, 793
SspMI CTAG 2 cut(s) 582, 1040
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 59, 197
TaaI ACNGT 6 cut(s) 84, 154, 492, 614, 638, 655
TaiI ACGT 2 cut(s) 885, 906
TaqI TCGA 4 cut(s) 114, 273, 446, 998
TaqII GACCGA 1 cut(s) 354
TasI AATT 7 cut(s) 110, 313, 379, 419, 451, 674, 1033
TauI GCSGC 4 cut(s) 54, 230, 755, 758
TfiI GAWTC 4 cut(s) 253, 400, 524, 1046
Tru1I TTAA 2 cut(s) 356, 981
Tru9I TTAA 2 cut(s) 356, 981
TscAI CASTG 2 cut(s) 874, 938
TspDTI ATGAA 5 cut(s) 401, 519, 746, 782, 1096
TspRI CASTG 2 cut(s) 874, 938
VpaK11BI GGWCC 1 cut(s) 57
XapI RAATTY 4 cut(s) 313, 379, 419, 1033
XspI CTAG 2 cut(s) 582, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.