Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010396

Physical Location & Seq

Genomic Coordinates Forward (+)

21459069 .. 21462848

Gene Structure 3780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G248300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGCTCTCAACAACAACACAAAAAAAACCAGAACCAGCCATTTTGTGCCGCACCCATTTCTCCCCAATGCTCAATCTCCTTAACAAGAGCCTCCTCCGTCTCTGCCACCGCCTCCGGTGGCCGGTTCGCCGCCGCTCTAGGCCCAAAGTTGTCATCAAGCGATTTGGGAAAACAAACTCCAAAAAATCTCAACTTGAGGCTAGACATGAAGCTAGCATTAATGGGTCGGCGGCAGTTCACCCTAATGGTCAATTGGGTGACTTAAAAACAGAGAGGCCTATAAGGATAGCGACTTTTAATGCTGCCCTGTTCTCAATGGCACCTGCGGTTCCAAAAAGTGAGAAAGTTGAGAGCTTTGATGATGAAAACGGAGATAGTATGAAGGTTAGGCACATTAACGTTCAAGCAAAGTCTGTAAATGATCGCCCAAAGAGTATTTTAAAGCAATCTCCTTTACATCCCAATTCAATGAACAACACAGAGAATCTCTCTAAGCAACAGAAGTTTGTGAAATCCAAGTTGCGGGTTTCGATCAATTTGCCTGACAATGAGATTTCTTTACTGAGAAATAGACAATTGAGCTTTTCTGAAGGAGGAGGAGGAAAGGAAGACTCTTCTTGTCCAAGTAGTAGTGGTAAGACTAGACTTCTGAGAGGAAAGGCTCCTCTGAGATCATCAAGTGTGAGCTTTTGTGCAAATATTGGTAATCGCACAGCAGATGGAGGAGAGTTTTATAGAAGCCATAGGACAGTGCTTGATGTGCTGAGAGAGTTGGATGCTGATATATTGGCTTTGCAAGATGTGAAGGCAGAGGAAGAGAAGGCCATGAAGCCTCTGTCTGATTTGGCTGCTGCTTTGGGCATGAATTATGTTTTTGCTGAAAGTTGGGCACCTGAGTATGGCAACGCCATCTTATCAAAATGGCCGATTAAGCGGTCGAAGGTTCAGAAAATCTTTGATGACACTGATTTCAGGAATGTCCTAAAGGCCACCATAGATGTTCCTGAAGCAGGAGAAGTCAACTTCCACTGCACCCACCTTGACCATCTTGATGAGAACTGGAGGATGAGGCAGATCAATGCTATAATCCAATCTAGCAATGAACCCCACATCTTGGCTGGAGGTCTCAATTCTTTGGATGAATCAGACTACTCTCAAGAAAGATGGACTGATATTGTAAAGTATTATGAGGAGATGGGAAAGCCAAGGCCTAAGGTTGAAGTAATGAGATACTTGAAGAGTAAACAATATACAGATGCTAAGGACTTTGAAGGAGAATATGAATCAGTGGTTATGATTGCCAAAGGCCAAAGTGTGCAGGGGACCTGCAAGTATGGAACCAGGGTGGATTACATATTGGCATCTTCAAATTCACCCTACAAGTTTGTTCCTGGGTCATACTCAGTGTTTTCTTCCAAAGGGACATCAGATCATCATATAGTAAGAGTTGATGTGATAAAAGTGGATAATGGTGTTGGAGAAGATCACACCAGAAGGCGGCAAATGAAGCAAAAGGTTACAAAGATAACAAACACTACTTCTCCATCAAAAGGGATATGGAAACTTCCAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

526

Amino Acids

59.13

Weight (kDa)

9.62

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48030 AT2G48030
fragaria_vesca	FvH4_2g24230 FvH4_2g24230 FvH4_2g24230
malus_domestica	MD03G1272200.v1.1 MD11G1292900.v1.1
prunus_persica	Prupe.8G248300_v2.0.a1
pyrus_communis	pycom03g21670
rosa_chinensis	RchiOBHm_Chr6g0292041
rosa_laevigata	RLG00000012068
rosa_multiflora	Rmu_sc0008666.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175480 Rroxscaffold_7G00178040
rosa_rugosa	Rorug06G0223000 Rorug06G0223100
rosa_samantha	Rh6AG336500 Rh6BG343800 Rh6CG350100 Rh6DG336800
rosa_wichuraiana	Rw6G029290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	2 cut(s)	331, 1334
AccB1I	GGYRCC	2 cut(s)	319, 889
AccB7I	CCANNNNNTGG	1 cut(s)	1114
AccBSI	CCGCTC	1 cut(s)	135
AciI	CCGC	9 cut(s)	49, 109, 130, 133, 230, 326, 523, 934, 1498
AclI	AACGTT	1 cut(s)	399
AcoI	YGGCCR	2 cut(s)	119, 923
AcsI	RAATTY	1 cut(s)	1369
AcuI	CTGAAG	2 cut(s)	609, 1026
AfiI	CCNNNNNNNGG	7 cut(s)	121, 522, 899, 1010, 1114, 1497, 1550
AgsI	TTSAA	6 cut(s)	404, 468, 1220, 1237, 1271, 1368
AjnI	CCWGG	2 cut(s)	1340, 1390
AluBI	AGCT	4 cut(s)	212, 354, 582, 687
AluI	AGCT	4 cut(s)	212, 354, 582, 687
Alw26I	GTCTC	2 cut(s)	104, 1130
AoxI	GGCC	8 cut(s)	119, 140, 275, 822, 923, 987, 1208, 1306
ApeKI	GCWGC	3 cut(s)	302, 848, 851
ApoI	RAATTY	1 cut(s)	1369
AseI	ATTAAT	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	141, 1323
AsuHPI	GGTGA	3 cut(s)	230, 269, 1365
AsuNHI	GCTAGC	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	1323
AxyI	CCTNAGG	1 cut(s)	1212
BaeGI	GKGCMC	1 cut(s)	892
BanI	GGYRCC	2 cut(s)	319, 889
BbsI	GAAGAC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	289, 835, 838
BccI	CCATC	6 cut(s)	713, 917, 1053, 1158, 1189, 1552
BcgI	CGANNNNNNTGC	2 cut(s)	520, 554
BciT130I	CCWGG	2 cut(s)	1342, 1392
BcoDI	GTCTC	2 cut(s)	104, 1130
BfaI	CTAG	5 cut(s)	138, 201, 213, 642, 1095
BfuAI	ACCTGC	2 cut(s)	331, 1334
BisI	GCNGC	8 cut(s)	49, 130, 133, 231, 303, 849, 852, 1499
BlsI	GCNGC	8 cut(s)	50, 131, 134, 232, 304, 850, 853, 1500
Bme1390I	CCNGG	2 cut(s)	1342, 1392
Bme18I	GGWCC	1 cut(s)	1323
BmgT120I	GGNCC	2 cut(s)	141, 1323
BmiI	GGNNCC	6 cut(s)	321, 330, 663, 891, 1324, 1339
BmrFI	CCNGG	2 cut(s)	1342, 1392
BmsI	GCATC	3 cut(s)	766, 1246, 1370
BmtI	GCTAGC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	615
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpmI	CTGGAG	2 cut(s)	1081, 1140
Bpu10I	CCTNAGC	1 cut(s)	1260
BpuEI	CTTGAG	2 cut(s)	215, 1140
BsaI	GGTCTC	1 cut(s)	1130
BsaJI	CCNNGG	3 cut(s)	1205, 1341, 1391
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	1525, 1555
Bsc4I	CCNNNNNNNGG	7 cut(s)	121, 522, 899, 1010, 1114, 1497, 1550
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	1064
Bse21I	CCTNAGG	1 cut(s)	1212
Bse3DI	GCAATG	1 cut(s)	1105
BseBI	CCWGG	2 cut(s)	1342, 1392
BseDI	CCNNGG	3 cut(s)	1205, 1341, 1391
BseGI	GGATG	4 cut(s)	457, 781, 1071, 1144
BseLI	CCNNNNNNNGG	7 cut(s)	121, 522, 899, 1010, 1114, 1497, 1550
BseMI	GCAATG	1 cut(s)	1105
BseMII	CTCAG	6 cut(s)	554, 641, 659, 755, 885, 1416
BseNI	ACTGG	1 cut(s)	1064
BseRI	GAGGAG	6 cut(s)	83, 609, 612, 654, 738, 1205
BseSI	GKGCMC	1 cut(s)	892
BseXI	GCAGC	3 cut(s)	289, 835, 838
BsgI	GTGCAG	2 cut(s)	1015, 1337
Bsh1285I	CGRYCG	1 cut(s)	938
BshFI	GGCC	8 cut(s)	121, 142, 277, 824, 925, 989, 1210, 1308
BshNI	GGYRCC	2 cut(s)	319, 889
BsiEI	CGRYCG	1 cut(s)	938
BsiSI	CCGG	2 cut(s)	115, 122
BslFI	GGGAC	2 cut(s)	1336, 1435
BslI	CCNNNNNNNGG	7 cut(s)	121, 522, 899, 1010, 1114, 1497, 1550
BsmAI	GTCTC	2 cut(s)	104, 1130
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	1336, 1435
BsnI	GGCC	8 cut(s)	121, 142, 277, 824, 925, 989, 1210, 1308
Bso31I	GGTCTC	1 cut(s)	1130
Bsp1286I	GDGCHC	1 cut(s)	892
Bsp143I	GATC	6 cut(s)	421, 531, 671, 1074, 1429, 1483
BspACI	CCGC	9 cut(s)	49, 109, 130, 133, 230, 326, 523, 934, 1498
BspANI	GGCC	8 cut(s)	121, 142, 277, 824, 925, 989, 1210, 1308
BspCNI	CTCAG	6 cut(s)	555, 642, 660, 756, 886, 1415
BspLI	GGNNCC	6 cut(s)	321, 330, 663, 891, 1324, 1339
BspMI	ACCTGC	2 cut(s)	331, 1334
BspOI	GCTAGC	1 cut(s)	216
BspT107I	GGYRCC	2 cut(s)	319, 889
BspTNI	GGTCTC	1 cut(s)	1130
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	1105
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	1064
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	1205, 1341, 1391
BssMI	GATC	6 cut(s)	421, 531, 671, 1074, 1429, 1483
BssT1I	CCWWGG	1 cut(s)	1205
Bst2UI	CCWGG	2 cut(s)	1342, 1392
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	3 cut(s)	619, 810, 1232
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	9 cut(s)	492, 563, 650, 668, 764, 894, 1212, 1260, 1402
BstENI	CCTNNNNNAGG	1 cut(s)	1008
BstF5I	GGATG	4 cut(s)	457, 781, 1071, 1144
BstKTI	GATC	6 cut(s)	424, 534, 674, 1077, 1432, 1486
BstMAI	GTCTC	2 cut(s)	104, 1130
BstMBI	GATC	6 cut(s)	421, 531, 671, 1074, 1429, 1483
BstMCI	CGRYCG	1 cut(s)	938
BstMWI	GCNNNNNNNGC	3 cut(s)	760, 931, 1507
BstNI	CCWGG	2 cut(s)	1342, 1392
BstSCI	CCNGG	2 cut(s)	1340, 1390
BstSLI	GKGCMC	1 cut(s)	892
BstV1I	GCAGC	3 cut(s)	289, 835, 838
BstV2I	GAAGAC	1 cut(s)	615
Bsu36I	CCTNAGG	1 cut(s)	1212
BsuRI	GGCC	8 cut(s)	121, 142, 277, 824, 925, 989, 1210, 1308
BtsCI	GGATG	4 cut(s)	457, 781, 1071, 1144
BtsI	GCAGTG	1 cut(s)	1027
BtsIMutI	CAGTG	5 cut(s)	756, 963, 1027, 1293, 1410
BveI	ACCTGC	2 cut(s)	331, 1334
Cac8I	GCNNGC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	141, 1323
CviAII	CATG	3 cut(s)	206, 826, 862
DdeI	CTNAG	9 cut(s)	492, 563, 650, 668, 764, 894, 1212, 1260, 1402
DpnI	GATC	6 cut(s)	423, 533, 673, 1076, 1431, 1485
DpnII	GATC	6 cut(s)	421, 531, 671, 1074, 1429, 1483
DraI	TTTAAA	1 cut(s)	441
EaeI	YGGCCR	2 cut(s)	119, 923
Eam1104I	CTCTTC	3 cut(s)	619, 810, 1232
EarI	CTCTTC	3 cut(s)	619, 810, 1232
Eco130I	CCWWGG	1 cut(s)	1205
Eco147I	AGGCCT	2 cut(s)	277, 1210
Eco31I	GGTCTC	1 cut(s)	1130
Eco47I	GGWCC	1 cut(s)	1323
Eco57I	CTGAAG	2 cut(s)	609, 1026
Eco81I	CCTNAGG	1 cut(s)	1212
EcoNI	CCTNNNNNAGG	1 cut(s)	1008
EcoO109I	RGGNCCY	1 cut(s)	1323
EcoRII	CCWGG	2 cut(s)	1340, 1390
EcoT14I	CCWWGG	1 cut(s)	1205
ErhI	CCWWGG	1 cut(s)	1205
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	3 cut(s)	209, 829, 865
FaqI	GGGAC	2 cut(s)	1336, 1435
FatI	CATG	3 cut(s)	205, 825, 861
FauI	CCCGC	1 cut(s)	516
Fnu4HI	GCNGC	8 cut(s)	49, 130, 133, 231, 303, 849, 852, 1499
FokI	GGATG	4 cut(s)	444, 788, 1078, 1151
Fsp4HI	GCNGC	8 cut(s)	49, 130, 133, 231, 303, 849, 852, 1499
FspBI	CTAG	5 cut(s)	138, 201, 213, 642, 1095
GluI	GCNGC	8 cut(s)	49, 130, 133, 231, 303, 849, 852, 1499
GsuI	CTGGAG	2 cut(s)	1081, 1140
HaeIII	GGCC	8 cut(s)	121, 142, 277, 824, 925, 989, 1210, 1308
HapII	CCGG	2 cut(s)	115, 122
Hin1II	CATG	3 cut(s)	209, 829, 865
HincII	GTYRAC	1 cut(s)	1021
HindII	GTYRAC	1 cut(s)	1021
HinfI	GANTC	4 cut(s)	484, 611, 1142, 1283
HpaII	CCGG	2 cut(s)	115, 122
HphI	GGTGA	3 cut(s)	230, 269, 1365
Hpy166II	GTNNAC	3 cut(s)	238, 1021, 1244
Hpy188I	TCNGA	7 cut(s)	589, 651, 669, 841, 948, 1147, 1429
Hpy188III	TCNNGA	4 cut(s)	973, 1004, 1049, 1157
Hpy8I	GTNNAC	3 cut(s)	238, 1021, 1244
HpyAV	CCTTC	7 cut(s)	376, 584, 799, 814, 934, 1265, 1488
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	5 cut(s)	695, 796, 1032, 1318, 1329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	760, 931, 1507
HpyF3I	CTNAG	9 cut(s)	492, 563, 650, 668, 764, 894, 1212, 1260, 1402
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	209, 829, 865
Kzo9I	GATC	6 cut(s)	421, 531, 671, 1074, 1429, 1483
LmnI	GCTCC	1 cut(s)	667
Lsp1109I	GCAGC	3 cut(s)	289, 835, 838
LweI	GCATC	3 cut(s)	766, 1246, 1370
MaeI	CTAG	5 cut(s)	138, 201, 213, 642, 1095
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	257, 1516
MalI	GATC	6 cut(s)	423, 533, 673, 1076, 1431, 1485
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	6 cut(s)	421, 531, 671, 1074, 1429, 1483
MboII	GAAGA	7 cut(s)	606, 620, 827, 1249, 1356, 1404, 1493
MfeI	CAATTG	2 cut(s)	251, 575
MhlI	GDGCHC	1 cut(s)	892
MluCI	AATT	7 cut(s)	251, 463, 535, 575, 865, 1129, 1369
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	2 cut(s)	753, 1456
MseI	TTAA	7 cut(s)	81, 219, 263, 297, 396, 440, 930
MslI	CAYNNNNRTG	2 cut(s)	243, 1050
MspI	CCGG	2 cut(s)	115, 122
MspR9I	CCNGG	2 cut(s)	1342, 1392
MunI	CAATTG	2 cut(s)	251, 575
MvaI	CCWGG	2 cut(s)	1342, 1392
MwoI	GCNNNNNNNGC	3 cut(s)	760, 931, 1507
NdeII	GATC	6 cut(s)	421, 531, 671, 1074, 1429, 1483
NheI	GCTAGC	1 cut(s)	212
NlaIII	CATG	3 cut(s)	209, 829, 865
NlaIV	GGNNCC	6 cut(s)	321, 330, 663, 891, 1324, 1339
NmuCI	GTSAC	1 cut(s)	257
PaqCI	CACCTGC	1 cut(s)	331
PceI	AGGCCT	2 cut(s)	277, 1210
PfeI	GAWTC	3 cut(s)	484, 1142, 1283
PflMI	CCANNNNNTGG	1 cut(s)	1114
PkrI	GCNGC	8 cut(s)	50, 131, 134, 232, 304, 850, 853, 1500
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
PpuMI	RGGWCCY	1 cut(s)	1323
PshBI	ATTAAT	1 cut(s)	219
Psp1406I	AACGTT	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	1323
Psp6I	CCWGG	2 cut(s)	1340, 1390
PspGI	CCWGG	2 cut(s)	1340, 1390
PspN4I	GGNNCC	6 cut(s)	321, 330, 663, 891, 1324, 1339
PspPI	GGNCC	2 cut(s)	141, 1323
PspPPI	RGGWCCY	1 cut(s)	1323
RseI	CAYNNNNRTG	2 cut(s)	243, 1050
SaqAI	TTAA	7 cut(s)	81, 219, 263, 297, 396, 440, 930
SatI	GCNGC	8 cut(s)	49, 130, 133, 231, 303, 849, 852, 1499
Sau3AI	GATC	6 cut(s)	421, 531, 671, 1074, 1429, 1483
Sau96I	GGNCC	2 cut(s)	141, 1323
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	2 cut(s)	1342, 1392
SduI	GDGCHC	1 cut(s)	892
SfaNI	GCATC	3 cut(s)	766, 1246, 1370
SinI	GGWCC	1 cut(s)	1323
SmiMI	CAYNNNNRTG	2 cut(s)	243, 1050
SmlI	CTYRAG	2 cut(s)	194, 1155
SmoI	CTYRAG	2 cut(s)	194, 1155
Sse9I	AATT	7 cut(s)	251, 463, 535, 575, 865, 1129, 1369
SseBI	AGGCCT	2 cut(s)	277, 1210
SsiI	CCGC	9 cut(s)	49, 109, 130, 133, 230, 326, 523, 934, 1498
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	5 cut(s)	138, 201, 213, 642, 1095
StuI	AGGCCT	2 cut(s)	277, 1210
StyD4I	CCNGG	2 cut(s)	1340, 1390
StyI	CCWWGG	1 cut(s)	1205
TaaI	ACNGT	1 cut(s)	751
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	530, 938
TasI	AATT	7 cut(s)	251, 463, 535, 575, 865, 1129, 1369
TauI	GCSGC	5 cut(s)	51, 132, 135, 233, 1501
TfiI	GAWTC	3 cut(s)	484, 1142, 1283
Tru1I	TTAA	7 cut(s)	81, 219, 263, 297, 396, 440, 930
Tru9I	TTAA	7 cut(s)	81, 219, 263, 297, 396, 440, 930
TscAI	CASTG	5 cut(s)	756, 970, 1034, 1293, 1410
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	3 cut(s)	302, 848, 851
Tsp45I	GTSAC	1 cut(s)	257
TspGWI	ACGGA	2 cut(s)	86, 384
TspRI	CASTG	5 cut(s)	756, 970, 1034, 1293, 1410
Van91I	CCANNNNNTGG	1 cut(s)	1114
VpaK11BI	GGWCC	1 cut(s)	1323
VspI	ATTAAT	1 cut(s)	219
XagI	CCTNNNNNAGG	1 cut(s)	1008
XapI	RAATTY	1 cut(s)	1369
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1115
XspI	CTAG	5 cut(s)	138, 201, 213, 642, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.