MD03G1286900.v1.1

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0007402
Physical Location & Seq
Reverse (-)
36601690 .. 36604523
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1286900.v1.1.491

Sequence Viewer

Length: 294 bp
ATGAAGTTCGGCAAGACATACCAGGAGTACGTGCAAGGCCAGAAGACGAAGCTGCCCGGAGTCGAATTCAAGAAGCTTAAGAAGACCTTGAAGAAATGTCGCAGAGAAGATTTCCATGACGTCCGTACCTCCCCTGATCACTACCCAGTGTGTGACGGGAGCTTTTTCCGGGCACTTCTCAATGAGATGTCTGCAGTGGTGGATTTCTTCAATAAGCGTGCACAGAAATTGCTTGAACTCCATCTGGCTTCCGGCTTTCGTAAGTACATGTTTTGGTTCAACGGCAAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009627 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0010337 GO:0010498 GO:0010565 GO:0010817 GO:0012501 GO:0014070 GO:0016020 GO:0016053 GO:0016567 GO:0016740 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019222 GO:0019438 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0032350 GO:0032446 GO:0032787 GO:0033554 GO:0034050 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042537 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045087 GO:0046189 GO:0046394 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0072330 GO:0080021 GO:0098542 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

98

Amino Acids

11.57

Weight (kDa)

9.83

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 3 cut(s) 29, 127, 266
AflII CTTAAG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 5 cut(s) 70, 91, 211, 236, 280
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 3 cut(s) 52, 76, 162
AluI AGCT 3 cut(s) 52, 76, 162
Alw21I GWGCWC 1 cut(s) 223
Alw44I GTGCAC 1 cut(s) 219
AoxI GGCC 1 cut(s) 37
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 65
AsuC2I CCSGG 2 cut(s) 57, 170
BaeGI GKGCMC 2 cut(s) 175, 223
BaeI ACNNNNGTAYC 2 cut(s) 109, 142
BbsI GAAGAC 2 cut(s) 50, 89
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 23
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 2 cut(s) 57, 170
BfmI CTRYAG 1 cut(s) 192
BfrI CTTAAG 1 cut(s) 77
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme1390I CCNGG 3 cut(s) 23, 57, 170
BmrFI CCNGG 3 cut(s) 23, 57, 170
BmrI ACTGGG 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 140
BpiI GAAGAC 2 cut(s) 50, 89
BpuMI CCSGG 2 cut(s) 57, 170
BsaAI YACGTR 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 146
BseSI GKGCMC 2 cut(s) 175, 223
BseXI GCAGC 1 cut(s) 39
BshFI GGCC 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 3 cut(s) 57, 169, 252
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 2 cut(s) 175, 223
Bsp143I GATC 1 cut(s) 136
BspANI GGCC 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 196
BspTI CTTAAG 1 cut(s) 77
BsrI ACTGG 1 cut(s) 146
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 219
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 3 cut(s) 21, 55, 168
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 2 cut(s) 175, 223
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 2 cut(s) 50, 89
BsuRI GGCC 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 153, 201
Cac8I GCNNGC 1 cut(s) 219
Csp6I GTAC 3 cut(s) 28, 126, 265
CviAII CATG 2 cut(s) 116, 268
CviJI RGCY 6 cut(s) 39, 52, 76, 162, 248, 255
CviKI_1 RGCY 6 cut(s) 39, 52, 76, 162, 248, 255
CviQI GTAC 3 cut(s) 28, 126, 265
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 21
FaeI CATG 2 cut(s) 119, 271
FaiI YATR 3 cut(s) 19, 117, 269
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FatI CATG 2 cut(s) 115, 267
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 39
HapII CCGG 3 cut(s) 57, 169, 252
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 2 cut(s) 119, 271
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 1 cut(s) 60
HpaII CCGG 3 cut(s) 57, 169, 252
Hpy166II GTNNAC 1 cut(s) 221
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 221
HpyCH4IV ACGT 2 cut(s) 30, 120
HpyCH4V TGCA 3 cut(s) 34, 194, 221
HpySE526I ACGT 2 cut(s) 30, 120
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 2 cut(s) 119, 271
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 9 cut(s) 8, 35, 53, 70, 147, 159, 182, 230, 265
Lsp1109I GCAGC 1 cut(s) 39
MaeII ACGT 2 cut(s) 30, 120
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 5 cut(s) 55, 94, 103, 119, 199
MhlI GDGCHC 2 cut(s) 175, 223
MluCI AATT 2 cut(s) 65, 227
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 1 cut(s) 139
MseI TTAA 1 cut(s) 78
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 3 cut(s) 57, 169, 252
MspR9I CCNGG 3 cut(s) 23, 57, 170
MvaI CCWGG 1 cut(s) 23
NciI CCSGG 2 cut(s) 57, 170
NdeII GATC 1 cut(s) 136
NlaIII CATG 2 cut(s) 119, 271
NmuCI GTSAC 1 cut(s) 152
NspI RCATGY 1 cut(s) 271
PciI ACATGT 1 cut(s) 267
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Ppu21I YACGTR 1 cut(s) 31
PscI ACATGT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PstI CTGCAG 1 cut(s) 196
RsaI GTAC 3 cut(s) 29, 127, 266
RsaNI GTAC 3 cut(s) 28, 126, 265
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 3 cut(s) 23, 57, 170
SduI GDGCHC 2 cut(s) 175, 223
SetI ASST 7 cut(s) 33, 54, 78, 89, 123, 131, 164
SfcI CTRYAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 65, 227
StyD4I CCNGG 3 cut(s) 21, 55, 168
TaiI ACGT 2 cut(s) 33, 123
TaqI TCGA 1 cut(s) 63
TasI AATT 2 cut(s) 65, 227
TatI WGTACW 1 cut(s) 264
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 2 cut(s) 153, 201
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 2 cut(s) 153, 201
Vha464I CTTAAG 1 cut(s) 77
VneI GTGCAC 1 cut(s) 219
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 271
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.