RLG00000011919

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007402
Physical Location & Seq
Forward (+)
13792915 .. 13794597
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011919

Sequence Viewer

Length: 981 bp
ATGAAGTTCTGCAAGAAATACCAGGAGTACATGCAAGGCCAAGGGAAGAAGCTACCTGGGGTTGGCTTCAAGAAGCTTAAGAAGATCTTGAAGAAATGCCGCAGAGATTTTCAGTCCGGAAATGACATTAATAATCATGCCGTACATGATCCCAGAACATGCCCTGACCATTGCCCAGTGTGTGATGGGTCGTTTTTCCCTTCACTGCTCAATGAAATGTCTGTAGTGGTAGGCTTTTTTAACCAGAAGGCACAGAAATTGCTCGAGTACCATTTGGCTTCTGGGTTTCGCAAGTACATGCTTGTGTTCAAAGGCAAGCCTCGAGGAAACCATGTTGCCTTAATCCAAGAAGGCAAGGACCTTGTCACTTATGCTCTCATTAACGCCATTGCGATTCGAAAAATACTCAAGAAATATGATAAGATTCATTACTCAAAGCAAGGGCAAGCCTTTAAGTCACAAGCGCAAAGTATGCACATTGGAATTCTTCGAAGTCCTTGGCTTTGTGAGCTTATGGCTTTCCACATCAATTTAAGGCAATCGAAGATCAAGTCGGGGAAGAGACCAGCGTTGTTTGAGGGATGCTCTCTTACAATGAATGATGAGAAGCCGTCTCTCACCTGTGAGCTCTTTGATTCCGTCAAAGTTGATATTGACTTGACATGTTCTATATGCCTGGATACAGTTTTTGATCCAGTTGCTCTCACTTGCGGTCATATATTCTGCTACCTATGTGCTTGCTCGGCTGCGTCAGTGACCATTGTCGATGGGTTAAAGGCTGCTGAGCCTAAAGAAAAATGCCCTTTATGCCGAGAGGCAAAAGTTTACCAAGGTTCTGTACACCTAGAAGAGCTTAGCATTTTACTCAGCAGAAGCTGCTGCGAATACTGGGAGCAGCGGATTCAGACAGAAAAGGTGGAGAGGGTTCGGCAAGCAAAGCAGCACTGGGAATCACAGTGCCGGGCATTCATGGGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009627 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0010337 GO:0010498 GO:0010565 GO:0010817 GO:0012501 GO:0014070 GO:0016020 GO:0016053 GO:0016567 GO:0016740 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019222 GO:0019438 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0032350 GO:0032446 GO:0032787 GO:0033554 GO:0034050 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042537 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045087 GO:0046189 GO:0046394 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0072330 GO:0080021 GO:0098542 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

327

Amino Acids

37.07

Weight (kDa)

9.12

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RING_XB3-XBAT31 PF24921 221 - 274 1.4e-07 E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4 PF00097 222 - 270 1.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 222 - 246 2.6e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 321
AccIII TCCGGA 1 cut(s) 116
AciI CCGC 3 cut(s) 100, 711, 898
AclWI GGATC 2 cut(s) 143, 686
AcsI RAATTY 1 cut(s) 483
AfaI GTAC 5 cut(s) 29, 144, 269, 296, 840
AfiI CCNNNNNNNGG 1 cut(s) 62
AflII CTTAAG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 662
AgsI TTSAA 3 cut(s) 70, 91, 310
AjnI CCWGG 3 cut(s) 21, 55, 675
AluBI AGCT 6 cut(s) 52, 76, 511, 628, 853, 876
AluI AGCT 6 cut(s) 52, 76, 511, 628, 853, 876
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 2 cut(s) 556, 618
AlwI GGATC 2 cut(s) 143, 686
AlwNI CAGNNNCTG 1 cut(s) 876
Ama87I CYCGRG 2 cut(s) 263, 321
Aor13HI TCCGGA 1 cut(s) 116
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 6 cut(s) 746, 779, 876, 879, 895, 940
ApoI RAATTY 1 cut(s) 483
ArsI GACNNNNNNTTYG 2 cut(s) 536, 568
AseI ATTAAT 1 cut(s) 129
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 1 cut(s) 358
AsuC2I CCSGG 1 cut(s) 962
AsuHPI GGTGA 1 cut(s) 610
AsuII TTCGAA 2 cut(s) 397, 490
AvaI CYCGRG 2 cut(s) 263, 321
AvaII GGWCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 630
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 6 cut(s) 733, 766, 863, 866, 907, 952
BccI CCATC 2 cut(s) 179, 761
BceAI ACGGC 2 cut(s) 125, 595
BciT130I CCWGG 3 cut(s) 23, 57, 677
BciVI GTATCC 1 cut(s) 673
BcnI CCSGG 1 cut(s) 962
BcoDI GTCTC 2 cut(s) 556, 618
BfaI CTAG 1 cut(s) 845
BfmI CTRYAG 1 cut(s) 222
BfrI CTTAAG 1 cut(s) 77
BfuI GTATCC 1 cut(s) 673
BglII AGATCT 1 cut(s) 84
BisI GCNGC 7 cut(s) 100, 747, 780, 877, 880, 896, 941
BlpI GCTNAGC 2 cut(s) 783, 854
BlsI GCNGC 7 cut(s) 101, 748, 781, 878, 881, 897, 942
Bme1390I CCNGG 4 cut(s) 23, 57, 677, 962
Bme18I GGWCC 1 cut(s) 358
BmeT110I CYCGRG 2 cut(s) 263, 321
BmgT120I GGNCC 1 cut(s) 358
BmrFI CCNGG 4 cut(s) 23, 57, 677, 962
BmrI ACTGGG 3 cut(s) 170, 898, 955
BmsI GCATC 1 cut(s) 572
BmuI ACTGGG 3 cut(s) 170, 898, 955
BoxI GACNNNNGTC 1 cut(s) 761
BplI GAGNNNNNCTC 2 cut(s) 569, 601
Bpu1102I GCTNAGC 2 cut(s) 783, 854
Bpu14I TTCGAA 2 cut(s) 397, 490
BpuEI CTTGAG 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 962
BsaI GGTCTC 1 cut(s) 556
BsaJI CCNNGG 4 cut(s) 40, 56, 497, 829
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 4 cut(s) 176, 695, 893, 950
Bse3DI GCAATG 2 cut(s) 169, 387
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 3 cut(s) 23, 57, 677
BseDI CCNNGG 4 cut(s) 40, 56, 497, 829
BseGI GGATG 1 cut(s) 587
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 2 cut(s) 169, 387
BseMII CTCAG 2 cut(s) 774, 880
BseNI ACTGG 4 cut(s) 176, 695, 893, 950
BseXI GCAGC 6 cut(s) 733, 766, 863, 866, 907, 952
BshFI GGCC 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 630
BsiHKCI CYCGRG 2 cut(s) 263, 321
BsiSI CCGG 2 cut(s) 117, 961
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 2 cut(s) 556, 618
BsmBI CGTCTC 1 cut(s) 618
BsmI GAATGC 1 cut(s) 965
BsnI GGCC 1 cut(s) 39
Bso31I GGTCTC 1 cut(s) 556
BsoBI CYCGRG 2 cut(s) 263, 321
Bsp119I TTCGAA 2 cut(s) 397, 490
Bsp1286I GDGCHC 1 cut(s) 630
Bsp13I TCCGGA 1 cut(s) 116
Bsp1407I TGTACA 1 cut(s) 838
Bsp143I GATC 4 cut(s) 84, 148, 546, 691
Bsp1720I GCTNAGC 2 cut(s) 783, 854
BspACI CCGC 3 cut(s) 100, 711, 898
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 775, 879
BspEI TCCGGA 1 cut(s) 116
BspPI GGATC 2 cut(s) 143, 686
BspQI GCTCTTC 1 cut(s) 843
BspT104I TTCGAA 2 cut(s) 397, 490
BspTI CTTAAG 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 556
BsrDI GCAATG 2 cut(s) 169, 387
BsrGI TGTACA 1 cut(s) 838
BsrI ACTGG 4 cut(s) 176, 695, 893, 950
BssECI CCNNGG 4 cut(s) 40, 56, 497, 829
BssMI GATC 4 cut(s) 84, 148, 546, 691
BssT1I CCWWGG 3 cut(s) 40, 497, 829
Bst2UI CCWGG 3 cut(s) 23, 57, 677
Bst4CI ACNGT 2 cut(s) 685, 957
Bst6I CTCTTC 2 cut(s) 554, 843
BstAFI CTTAAG 1 cut(s) 77
BstAPI GCANNNNNTGC 2 cut(s) 472, 876
BstAUI TGTACA 1 cut(s) 838
BstBI TTCGAA 2 cut(s) 397, 490
BstC8I GCNNGC 4 cut(s) 317, 447, 739, 933
BstDEI CTNAG 3 cut(s) 783, 854, 866
BstF5I GGATG 1 cut(s) 587
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 4 cut(s) 87, 151, 549, 694
BstMAI GTCTC 2 cut(s) 556, 618
BstMBI GATC 4 cut(s) 84, 148, 546, 691
BstMWI GCNNNNNNNGC 6 cut(s) 472, 508, 743, 807, 876, 937
BstNI CCWGG 3 cut(s) 23, 57, 677
BstNSI RCATGY 4 cut(s) 34, 162, 301, 666
BstPAI GACNNNNGTC 1 cut(s) 761
BstSCI CCNGG 4 cut(s) 21, 55, 675, 960
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 6 cut(s) 733, 766, 863, 866, 907, 952
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BsuI GTATCC 1 cut(s) 673
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 587
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 5 cut(s) 183, 203, 759, 943, 962
Cac8I GCNNGC 4 cut(s) 317, 447, 739, 933
CaiI CAGNNNCTG 1 cut(s) 876
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 358
CseI GACGC 1 cut(s) 738
Csp6I GTAC 5 cut(s) 28, 143, 268, 295, 839
CviAII CATG 8 cut(s) 31, 137, 146, 159, 298, 332, 663, 970
CviQI GTAC 5 cut(s) 28, 143, 268, 295, 839
DdeI CTNAG 3 cut(s) 783, 854, 866
DpnI GATC 4 cut(s) 86, 150, 548, 693
DpnII GATC 4 cut(s) 84, 148, 546, 691
Eam1104I CTCTTC 2 cut(s) 554, 843
EarI CTCTTC 2 cut(s) 554, 843
Ecl136II GAGCTC 1 cut(s) 628
Eco130I CCWWGG 3 cut(s) 40, 497, 829
Eco24I GRGCYC 1 cut(s) 630
Eco31I GGTCTC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 628
Eco88I CYCGRG 2 cut(s) 263, 321
EcoICRI GAGCTC 1 cut(s) 628
EcoO109I RGGNCCY 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 483
EcoRII CCWGG 3 cut(s) 21, 55, 675
EcoT14I CCWWGG 3 cut(s) 40, 497, 829
EcoT38I GRGCYC 1 cut(s) 630
ErhI CCWWGG 3 cut(s) 40, 497, 829
Esp3I CGTCTC 1 cut(s) 618
FaeI CATG 8 cut(s) 34, 140, 149, 162, 301, 335, 666, 973
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FatI CATG 8 cut(s) 30, 136, 145, 158, 297, 331, 662, 969
Fnu4HI GCNGC 7 cut(s) 100, 747, 780, 877, 880, 896, 941
FokI GGATG 1 cut(s) 594
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 7 cut(s) 100, 747, 780, 877, 880, 896, 941
FspBI CTAG 1 cut(s) 845
GlaI GCGC 1 cut(s) 465
GluI GCNGC 7 cut(s) 100, 747, 780, 877, 880, 896, 941
HaeIII GGCC 1 cut(s) 39
HapII CCGG 2 cut(s) 117, 961
HgaI GACGC 1 cut(s) 738
HhaI GCGC 1 cut(s) 466
Hin1II CATG 8 cut(s) 34, 140, 149, 162, 301, 335, 666, 973
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 5 cut(s) 394, 424, 635, 901, 950
HpaII CCGG 2 cut(s) 117, 961
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 2 cut(s) 826, 841
Hpy188I TCNGA 1 cut(s) 906
Hpy188III TCNNGA 4 cut(s) 70, 88, 117, 409
Hpy8I GTNNAC 2 cut(s) 826, 841
HpyAV CCTTC 3 cut(s) 210, 241, 344
HpyCH4III ACNGT 2 cut(s) 685, 957
HpyCH4V TGCA 3 cut(s) 12, 34, 475
HpyF10VI GCNNNNNNNGC 6 cut(s) 472, 508, 743, 807, 876, 937
HpyF3I CTNAG 3 cut(s) 783, 854, 866
Hsp92II CATG 8 cut(s) 34, 140, 149, 162, 301, 335, 666, 973
HspAI GCGC 1 cut(s) 464
Kpn2I TCCGGA 1 cut(s) 116
Kzo9I GATC 4 cut(s) 84, 148, 546, 691
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 1 cut(s) 892
Lsp1109I GCAGC 6 cut(s) 733, 766, 863, 866, 907, 952
LweI GCATC 1 cut(s) 572
MaeI CTAG 1 cut(s) 845
MaeIII GTNAC 3 cut(s) 364, 456, 754
MalI GATC 4 cut(s) 86, 150, 548, 693
MboI GATC 4 cut(s) 84, 148, 546, 691
MboII GAAGA 7 cut(s) 58, 94, 103, 479, 556, 571, 860
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 630
MluCI AATT 3 cut(s) 257, 483, 529
MnlI CCTC 5 cut(s) 317, 330, 571, 808, 915
MroI TCCGGA 1 cut(s) 116
MseI TTAA 8 cut(s) 78, 129, 240, 341, 381, 453, 533, 773
MslI CAYNNNNRTG 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 898
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 2 cut(s) 117, 961
MspR9I CCNGG 4 cut(s) 23, 57, 677, 962
Mva1269I GAATGC 1 cut(s) 965
MvaI CCWGG 3 cut(s) 23, 57, 677
MwoI GCNNNNNNNGC 6 cut(s) 472, 508, 743, 807, 876, 937
NciI CCSGG 1 cut(s) 962
NdeII GATC 4 cut(s) 84, 148, 546, 691
NlaIII CATG 8 cut(s) 34, 140, 149, 162, 301, 335, 666, 973
NmeAIII GCCGAG 2 cut(s) 722, 836
NmuCI GTSAC 3 cut(s) 364, 456, 754
NspI RCATGY 4 cut(s) 34, 162, 301, 666
NspV TTCGAA 2 cut(s) 397, 490
PaeR7I CTCGAG 2 cut(s) 263, 321
PciI ACATGT 1 cut(s) 662
PciSI GCTCTTC 1 cut(s) 843
PctI GAATGC 1 cut(s) 965
PfeI GAWTC 5 cut(s) 394, 424, 635, 901, 950
PflFI GACNNNGTC 1 cut(s) 362
PkrI GCNGC 7 cut(s) 101, 748, 781, 878, 881, 897, 942
PpuMI RGGWCCY 1 cut(s) 358
PscI ACATGT 1 cut(s) 662
PshAI GACNNNNGTC 1 cut(s) 761
PshBI ATTAAT 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 630
Psp5II RGGWCCY 1 cut(s) 358
Psp6I CCWGG 3 cut(s) 21, 55, 675
PspGI CCWGG 3 cut(s) 21, 55, 675
PspPI GGNCC 1 cut(s) 358
PspPPI RGGWCCY 1 cut(s) 358
PspXI VCTCGAGB 2 cut(s) 263, 321
PstNI CAGNNNCTG 1 cut(s) 876
PsuI RGATCY 1 cut(s) 84
PsyI GACNNNGTC 1 cut(s) 362
RsaI GTAC 5 cut(s) 29, 144, 269, 296, 840
RsaNI GTAC 5 cut(s) 28, 143, 268, 295, 839
RseI CAYNNNNRTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 630
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 8 cut(s) 78, 129, 240, 341, 381, 453, 533, 773
SatI GCNGC 7 cut(s) 100, 747, 780, 877, 880, 896, 941
Sau3AI GATC 4 cut(s) 84, 148, 546, 691
Sau96I GGNCC 1 cut(s) 358
ScrFI CCNGG 4 cut(s) 23, 57, 677, 962
SduI GDGCHC 1 cut(s) 630
SfaNI GCATC 1 cut(s) 572
SfcI CTRYAG 1 cut(s) 222
Sfr274I CTCGAG 2 cut(s) 263, 321
SfuI TTCGAA 2 cut(s) 397, 490
SinI GGWCC 1 cut(s) 358
SlaI CTCGAG 2 cut(s) 263, 321
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 4 cut(s) 77, 263, 321, 407
SmoI CTYRAG 4 cut(s) 77, 263, 321, 407
Sse9I AATT 3 cut(s) 257, 483, 529
SsiI CCGC 3 cut(s) 100, 711, 898
SspMI CTAG 1 cut(s) 845
SstI GAGCTC 1 cut(s) 630
StyD4I CCNGG 4 cut(s) 21, 55, 675, 960
StyI CCWWGG 3 cut(s) 40, 497, 829
TaaI ACNGT 2 cut(s) 685, 957
TaqI TCGA 6 cut(s) 264, 322, 397, 490, 542, 765
TasI AATT 3 cut(s) 257, 483, 529
TatI WGTACW 3 cut(s) 27, 294, 838
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 5 cut(s) 394, 424, 635, 901, 950
Tru1I TTAA 8 cut(s) 78, 129, 240, 341, 381, 453, 533, 773
Tru9I TTAA 8 cut(s) 78, 129, 240, 341, 381, 453, 533, 773
TscAI CASTG 5 cut(s) 183, 210, 759, 950, 962
TseFI GTSAC 3 cut(s) 364, 456, 754
TseI GCWGC 6 cut(s) 746, 779, 876, 879, 895, 940
Tsp45I GTSAC 3 cut(s) 364, 456, 754
TspDTI ATGAA 5 cut(s) 17, 228, 416, 611, 958
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 5 cut(s) 183, 210, 759, 950, 962
Tth111I GACNNNGTC 1 cut(s) 362
Vha464I CTTAAG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 358
VspI ATTAAT 1 cut(s) 129
XapI RAATTY 1 cut(s) 483
XceI RCATGY 4 cut(s) 34, 162, 301, 666
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XhoI CTCGAG 2 cut(s) 263, 321
XspI CTAG 1 cut(s) 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.