MD11G1313600.v1.1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
42597648 .. 42600287
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1313600.v1.1.491

Sequence Viewer

Length: 951 bp
ATGAAGTTCTGCAAGACATACCAGGAGTACATGCAAGGCCAGAAGAAGAAGCAGCCCGGGGTTGGATTCAAGAAGCTTAAGAAGATCTTGAAGAAATGCCGCAGAGAAGATTTCCATGACGTCCGTACTTGCCCTGACCATTGCACAGTGTGTGATGGGAGCTTTTTCCCGGCCCTTCTCGATGAGATGTCTGCTGTGGTGGGTTTCTTTCATAAGCGTGCACAGACATTGCTTGAACTCCATCTGGCTTCTGGCTTGCGTAAGTACATGTTTTGGGTCCAAGGCAAACGTCGAGGGGGCCATGGTGCCTTGATAGAAGAAGGCAAGGACCTCGTGACTTATGCACTGATCAACGCCATTGCCATTCGGAAAATACTAAAGAAATATGATAAGATTCATTACTCAACACAAGGACAGGCATTTAAGTCGCAAGCTCAAAGTATGCACATTGGACTCCTTCAGAGCCCATGGCTTTTCGAGCTTATGGCTTTTCACATCAATTTAAGGGAAACCGAGACTAAGTCGAGGAAGGCACCGGCTTTGTTTGAGGGATGCTCCCTCAAGATTAATGATGAGAAACCATCTCTCGCCTGTGAGCTCTTTGATTCCGTTAAGCTTGATATTGATTTGACTTGTTCTATATGCTTGGACACAGTTTTTGATCCAGTTGCTCTTACGTGCGGTCATATATTCTGCTACATGTGTGCTTGCTCGGCTGCATCAGTGACTATTGTTGATGGATTAAAGTCTGCAGAGCCTAAAGAAAAATGCCCTCTATGCCGAGAGGCAAGAGTTTTTGAAGGCGCGGTGCATTTAGAAGAGCTTAACATGTTACTTAGCCGAAACTGCCGTGAATACTGGGAGCAGAGACTCCAGACCGAGAGGGTAGAGAGGGTTCGGCAAGCAAAGCAGCACTGGGAATCCCAGTGCCGGGCATTCATTGGTGCTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

317

Amino Acids

36.19

Weight (kDa)

8.88

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RING_XB3-XBAT31 PF24921 211 - 263 1.9e-07 E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4 PF00097 212 - 260 5.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 212 - 241 4.4e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AccB1I GGYRCC 2 cut(s) 305, 532
AccII CGCG 1 cut(s) 806
AciI CCGC 3 cut(s) 100, 681, 806
AclWI GGATC 1 cut(s) 656
AcuI CTGAAG 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 120
AdeI CACNNNGTG 1 cut(s) 150
AfaI GTAC 3 cut(s) 29, 127, 266
AfiI CCNNNNNNNGG 3 cut(s) 62, 930, 931
AflII CTTAAG 1 cut(s) 77
AflIII ACRYGT 3 cut(s) 267, 699, 828
AgsI TTSAA 4 cut(s) 70, 91, 236, 800
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 7 cut(s) 76, 162, 434, 481, 598, 616, 823
AluI AGCT 7 cut(s) 76, 162, 434, 481, 598, 616, 823
Alw21I GWGCWC 2 cut(s) 223, 600
Alw26I GTCTC 2 cut(s) 509, 862
Alw44I GTGCAC 1 cut(s) 219
AlwI GGATC 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 3 cut(s) 37, 171, 298
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 3 cut(s) 52, 716, 910
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
AseI ATTAAT 1 cut(s) 567
AspLEI GCGC 1 cut(s) 806
AspS9I GGNCC 4 cut(s) 172, 277, 298, 328
AsuC2I CCSGG 4 cut(s) 57, 58, 170, 932
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 2 cut(s) 277, 328
BaeGI GKGCMC 1 cut(s) 223
BanI GGYRCC 2 cut(s) 305, 532
BanII GRGCYC 2 cut(s) 467, 600
BauI CACGAG 1 cut(s) 332
Bbv12I GWGCWC 2 cut(s) 223, 600
BbvI GCAGC 3 cut(s) 64, 703, 922
BccI CCATC 4 cut(s) 149, 249, 589, 731
BceAI ACGGC 1 cut(s) 834
BcgI CGANNNNNNTGC 4 cut(s) 313, 347, 408, 442
BciT130I CCWGG 1 cut(s) 23
BclI TGATCA 1 cut(s) 348
BcnI CCSGG 4 cut(s) 57, 58, 170, 932
BcoDI GTCTC 2 cut(s) 509, 862
BfmI CTRYAG 1 cut(s) 750
BfrI CTTAAG 1 cut(s) 77
BglII AGATCT 1 cut(s) 84
BisI GCNGC 4 cut(s) 53, 100, 717, 911
BlsI GCNGC 4 cut(s) 54, 101, 718, 912
Bme1390I CCNGG 5 cut(s) 23, 57, 58, 170, 932
Bme18I GGWCC 2 cut(s) 277, 328
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 4 cut(s) 172, 277, 298, 328
BmiI GGNNCC 4 cut(s) 278, 299, 307, 534
BmrFI CCNGG 5 cut(s) 23, 57, 58, 170, 932
BmrI ACTGGG 3 cut(s) 868, 919, 925
BmsI GCATC 2 cut(s) 542, 728
BmuI ACTGGG 3 cut(s) 868, 919, 925
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpmI CTGGAG 1 cut(s) 857
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 4 cut(s) 57, 58, 170, 932
BsaAI YACGTR 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 5 cut(s) 56, 57, 280, 301, 467
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 930, 931
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 4 cut(s) 665, 863, 920, 925
Bse3DI GCAATG 3 cut(s) 139, 227, 357
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 5 cut(s) 56, 57, 280, 301, 467
BseGI GGATG 1 cut(s) 557
BseLI CCNNNNNNNGG 3 cut(s) 62, 930, 931
BseMI GCAATG 3 cut(s) 139, 227, 357
BseNI ACTGG 4 cut(s) 665, 863, 920, 925
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 3 cut(s) 64, 703, 922
Bsh1236I CGCG 1 cut(s) 806
BshFI GGCC 3 cut(s) 39, 173, 300
BshNI GGYRCC 2 cut(s) 305, 532
BsiHKAI GWGCWC 2 cut(s) 223, 600
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 4 cut(s) 57, 170, 536, 931
BslI CCNNNNNNNGG 3 cut(s) 62, 930, 931
BsmAI GTCTC 2 cut(s) 509, 862
BsmI GAATGC 1 cut(s) 935
BsnI GGCC 3 cut(s) 39, 173, 300
BsoBI CYCGRG 1 cut(s) 56
Bsp1286I GDGCHC 3 cut(s) 223, 467, 600
Bsp143I GATC 3 cut(s) 84, 348, 661
Bsp19I CCATGG 2 cut(s) 301, 467
BspACI CCGC 3 cut(s) 100, 681, 806
BspANI GGCC 3 cut(s) 39, 173, 300
BspFNI CGCG 1 cut(s) 806
BspLI GGNNCC 4 cut(s) 278, 299, 307, 534
BspMAI CTGCAG 1 cut(s) 754
BspPI GGATC 1 cut(s) 656
BspQI GCTCTTC 1 cut(s) 813
BspT107I GGYRCC 2 cut(s) 305, 532
BspTI CTTAAG 1 cut(s) 77
BsrDI GCAATG 3 cut(s) 139, 227, 357
BsrFI RCCGGY 1 cut(s) 535
BsrI ACTGG 4 cut(s) 665, 863, 920, 925
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 5 cut(s) 56, 57, 280, 301, 467
BssMI GATC 3 cut(s) 84, 348, 661
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 3 cut(s) 280, 301, 467
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 148, 655
Bst6I CTCTTC 1 cut(s) 813
BstACI GRCGYC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 678
BstC8I GCNNGC 5 cut(s) 219, 257, 432, 709, 903
BstDEI CTNAG 3 cut(s) 519, 836, 948
BstDSI CCRYGG 2 cut(s) 301, 467
BstF5I GGATG 1 cut(s) 557
BstFNI CGCG 1 cut(s) 806
BstHHI GCGC 1 cut(s) 806
BstKTI GATC 3 cut(s) 87, 351, 664
BstMAI GTCTC 2 cut(s) 509, 862
BstMBI GATC 3 cut(s) 84, 348, 661
BstMWI GCNNNNNNNGC 5 cut(s) 478, 713, 777, 846, 907
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 4 cut(s) 34, 271, 703, 832
BstSCI CCNGG 5 cut(s) 21, 55, 56, 168, 930
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 1 cut(s) 806
BstV1I GCAGC 3 cut(s) 64, 703, 922
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 3 cut(s) 39, 173, 300
BtgI CCRYGG 2 cut(s) 301, 467
BtsCI GGATG 1 cut(s) 557
BtsIMutI CAGTG 5 cut(s) 153, 344, 729, 913, 932
Cac8I GCNNGC 5 cut(s) 219, 257, 432, 709, 903
CfoI GCGC 1 cut(s) 806
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 4 cut(s) 172, 277, 298, 328
Cfr9I CCCGGG 1 cut(s) 56
Csp6I GTAC 3 cut(s) 28, 126, 265
CviAII CATG 7 cut(s) 31, 116, 268, 302, 468, 700, 829
CviQI GTAC 3 cut(s) 28, 126, 265
DdeI CTNAG 3 cut(s) 519, 836, 948
DpnI GATC 3 cut(s) 86, 350, 663
DpnII GATC 3 cut(s) 84, 348, 661
DraIII CACNNNGTG 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
Ecl136II GAGCTC 1 cut(s) 598
Eco130I CCWWGG 3 cut(s) 280, 301, 467
Eco24I GRGCYC 2 cut(s) 467, 600
Eco47I GGWCC 2 cut(s) 277, 328
Eco53kI GAGCTC 1 cut(s) 598
Eco57I CTGAAG 1 cut(s) 443
Eco88I CYCGRG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 598
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 3 cut(s) 280, 301, 467
EcoT38I GRGCYC 2 cut(s) 467, 600
ErhI CCWWGG 3 cut(s) 280, 301, 467
FaeI CATG 7 cut(s) 34, 119, 271, 305, 471, 703, 832
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FatI CATG 7 cut(s) 30, 115, 267, 301, 467, 699, 828
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 4 cut(s) 53, 100, 717, 911
FokI GGATG 1 cut(s) 564
FriOI GRGCYC 2 cut(s) 467, 600
Fsp4HI GCNGC 4 cut(s) 53, 100, 717, 911
GlaI GCGC 1 cut(s) 805
GluI GCNGC 4 cut(s) 53, 100, 717, 911
GsuI CTGGAG 1 cut(s) 857
HaeIII GGCC 3 cut(s) 39, 173, 300
HapII CCGG 4 cut(s) 57, 170, 536, 931
HhaI GCGC 1 cut(s) 806
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 7 cut(s) 34, 119, 271, 305, 471, 703, 832
Hin6I GCGC 1 cut(s) 804
HinP1I GCGC 1 cut(s) 804
HindIII AAGCTT 2 cut(s) 74, 614
HinfI GANTC 6 cut(s) 66, 394, 453, 605, 870, 920
HpaII CCGG 4 cut(s) 57, 170, 536, 931
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 369, 462
Hpy188III TCNNGA 6 cut(s) 70, 88, 179, 334, 562, 874
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 5 cut(s) 185, 314, 467, 523, 794
HpyCH4III ACNGT 2 cut(s) 148, 655
HpyCH4IV ACGT 3 cut(s) 120, 289, 677
HpyCH4V TGCA 9 cut(s) 12, 34, 144, 221, 344, 445, 719, 752, 811
HpyF10VI GCNNNNNNNGC 5 cut(s) 478, 713, 777, 846, 907
HpyF3I CTNAG 3 cut(s) 519, 836, 948
HpySE526I ACGT 3 cut(s) 120, 289, 677
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 7 cut(s) 34, 119, 271, 305, 471, 703, 832
HspAI GCGC 1 cut(s) 804
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 3 cut(s) 84, 348, 661
LguI GCTCTTC 1 cut(s) 813
LmnI GCTCC 3 cut(s) 159, 560, 862
Lsp1109I GCAGC 3 cut(s) 64, 703, 922
LweI GCATC 2 cut(s) 542, 728
MaeII ACGT 3 cut(s) 120, 289, 677
MaeIII GTNAC 3 cut(s) 334, 724, 831
MalI GATC 3 cut(s) 86, 350, 663
MboI GATC 3 cut(s) 84, 348, 661
MboII GAAGA 7 cut(s) 55, 58, 94, 103, 119, 329, 830
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 3 cut(s) 223, 467, 600
MluCI AATT 1 cut(s) 499
MlyI GAGTC 2 cut(s) 447, 864
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 9 cut(s) 287, 341, 519, 541, 569, 778, 783, 876, 885
MseI TTAA 7 cut(s) 78, 423, 503, 567, 612, 743, 825
MslI CAYNNNNRTG 1 cut(s) 216
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 4 cut(s) 57, 170, 536, 931
MspR9I CCNGG 5 cut(s) 23, 57, 58, 170, 932
Mva1269I GAATGC 1 cut(s) 935
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 806
MwoI GCNNNNNNNGC 5 cut(s) 478, 713, 777, 846, 907
NciI CCSGG 4 cut(s) 57, 58, 170, 932
NcoI CCATGG 2 cut(s) 301, 467
NdeII GATC 3 cut(s) 84, 348, 661
NlaIII CATG 7 cut(s) 34, 119, 271, 305, 471, 703, 832
NlaIV GGNNCC 4 cut(s) 278, 299, 307, 534
NmeAIII GCCGAG 2 cut(s) 692, 806
NmuCI GTSAC 2 cut(s) 334, 724
NspI RCATGY 4 cut(s) 34, 271, 703, 832
PciI ACATGT 3 cut(s) 267, 699, 828
PciSI GCTCTTC 1 cut(s) 813
PctI GAATGC 1 cut(s) 935
PfeI GAWTC 4 cut(s) 66, 394, 605, 920
PflFI GACNNNGTC 1 cut(s) 520
PkrI GCNGC 4 cut(s) 54, 101, 718, 912
PleI GAGTC 2 cut(s) 447, 864
PpsI GAGTC 2 cut(s) 447, 864
Ppu21I YACGTR 1 cut(s) 678
PpuMI RGGWCCY 1 cut(s) 328
PscI ACATGT 3 cut(s) 267, 699, 828
PshBI ATTAAT 1 cut(s) 567
Psp124BI GAGCTC 1 cut(s) 600
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 4 cut(s) 278, 299, 307, 534
PspPI GGNCC 4 cut(s) 172, 277, 298, 328
PspPPI RGGWCCY 1 cut(s) 328
PsrI GAACNNNNNNTAC 2 cut(s) 879, 911
PstI CTGCAG 1 cut(s) 754
PsuI RGATCY 1 cut(s) 84
PsyI GACNNNGTC 1 cut(s) 520
RsaI GTAC 3 cut(s) 29, 127, 266
RsaNI GTAC 3 cut(s) 28, 126, 265
RseI CAYNNNNRTG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 600
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 7 cut(s) 78, 423, 503, 567, 612, 743, 825
SatI GCNGC 4 cut(s) 53, 100, 717, 911
Sau3AI GATC 3 cut(s) 84, 348, 661
Sau96I GGNCC 4 cut(s) 172, 277, 298, 328
SchI GAGTC 2 cut(s) 447, 864
ScrFI CCNGG 5 cut(s) 23, 57, 58, 170, 932
SduI GDGCHC 3 cut(s) 223, 467, 600
SfaNI GCATC 2 cut(s) 542, 728
SfcI CTRYAG 1 cut(s) 750
SinI GGWCC 2 cut(s) 277, 328
SmaI CCCGGG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 2 cut(s) 77, 560
SmoI CTYRAG 2 cut(s) 77, 560
Sse9I AATT 1 cut(s) 499
SsiI CCGC 3 cut(s) 100, 681, 806
SstI GAGCTC 1 cut(s) 600
StyD4I CCNGG 5 cut(s) 21, 55, 56, 168, 930
StyI CCWWGG 3 cut(s) 280, 301, 467
TaaI ACNGT 2 cut(s) 148, 655
TaiI ACGT 3 cut(s) 123, 292, 680
TaqI TCGA 4 cut(s) 180, 292, 477, 524
TaqII GACCGA 1 cut(s) 893
TasI AATT 1 cut(s) 499
TatI WGTACW 2 cut(s) 27, 264
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 4 cut(s) 66, 394, 605, 920
Tru1I TTAA 7 cut(s) 78, 423, 503, 567, 612, 743, 825
Tru9I TTAA 7 cut(s) 78, 423, 503, 567, 612, 743, 825
TscAI CASTG 5 cut(s) 153, 351, 729, 920, 932
TseFI GTSAC 2 cut(s) 334, 724
TseI GCWGC 3 cut(s) 52, 716, 910
Tsp45I GTSAC 2 cut(s) 334, 724
TspDTI ATGAA 4 cut(s) 17, 200, 386, 928
TspGWI ACGGA 2 cut(s) 113, 598
TspMI CCCGGG 1 cut(s) 56
TspRI CASTG 5 cut(s) 153, 351, 729, 920, 932
Tth111I GACNNNGTC 1 cut(s) 520
Vha464I CTTAAG 1 cut(s) 77
VneI GTGCAC 1 cut(s) 219
VpaK11BI GGWCC 2 cut(s) 277, 328
VspI ATTAAT 1 cut(s) 567
XceI RCATGY 4 cut(s) 34, 271, 703, 832
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XmaI CCCGGG 1 cut(s) 56
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.