Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0008400

Physical Location & Seq

Genomic Coordinates Forward (+)

67771 .. 71174

Gene Structure 3404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1000700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGTATAGAAGAAGAAGAAGTGAATCTGAACCCAATAGTTTGCAAAACAACAAGGAAGAAGAAACAGAAACAGATGGAGATGGAGTAGGAAAGATGTGGATTCGGATACATGTTGGGGGATTGGGAGGTACTGTGACGGAGGTGGACCTGCGTCGGATGTTCTCCGGCGGAGGAACCGTGGAGGGAGTGGACATCGTCAGAACCAAAGGTCGCATCTTTGCGTACGTCGACTTCCTCCCTTCCGACGACAAGTCCCTCTCCAAGCTCTTCACCACGTACAATGGGTGCGCGTGGAAGGGAGGGAAGCTGAGGCTCCAAAAGGCTAAAGAAGATTATCTTGTTCGCTTGCAACGCGAATGGGATGAAGATGCTGCTCGACTAGCTGCTGCTGCTCCTCCTCCAGATGATGCACATGATATTAAACATTCACTATCACACTCAACCAAAACCAGCAGCAACAACACGAAGCAACTTCGGATTTTCTTCCCTGCACTAAGAACCGTGAAAGCTTTGCCCTTTACTGGAACTGGCAAACACAAATACAGCTTCCAGCGTCTTCAAACTCCTTCTCTCCCTGTCCATTTCTGCGACTGTGAAGAGCATTATGTCCCCGTCCCTTCTCAACCTACAACTACTAAACCTAGTCAAACTCAATCCGACAATTTATTATGTGATAATGGGATCGATGAGCAAGAGCTTAATATAATGACTAAGGTCATGGACAGGCTATTCCAAACTCAAAATGAAACAAATGTCGATCATGATGGTACTCATCAACAACCCCATCAACTGCATCTTGCTGCTACTACTCCCCCTGACGAAGACAACCTTATCATCAACGTTGTCTCCAGCAACCAGGAAAAAATGGAAAAACTATCAGAGTTTCAGGAATTTAAATCCACTGAAACACAAGCTCTGAAAGGAAAAAGATCATCACCAAGTGAAGCGCAGATAAATATTAATGAACCTCCTAAGAAAAAGAGGAAATCCCTTCCTAGTGATTACAACCATCAAAAGGAATTGGAGGCAGCTCTTTCTGGCAGCAAGAAGAATTTGCCAACCCAGTCAAAAGTTTCAGGAAAATTCTTTGGAGCACAACCAGATCAACCAGAATTAGGTCGGCAACAGGTTTCTTGGTCTCAGAAGTCTTCGTGGAGACAACTTGTTGGTCATAGGGGAAGCAGTTCATTCAGCGTTTCACATGTACTGACCGGCATTGCTCCTTCTGCTGACCAAGTTGAAACAAAATCTGGTAGTTCAGAAGTGTCCCTTTCTGATAGTGAAAACCAGGATTTGGAAAGCAATGGAAACTCGGAAGACCAGCCCAGTGAGATGGAACTGGTGGAACCTACCAAGTCAGTTGTAGTTTCAAATAAGTTGTTGGGTAGAGGTGCTTCTTCCACTGACCAAGTTGAACCAAAATCTGTTAGTTTAGAAGTGCCCCTTTCGGATAGTGAAAACCAGGATTTGGAAAGCAATGGAAACTCGGAAGACCTGCCCGGTGATATGGAACTGGTGGAACCTCAACTTACCAAGTCAATTGGAATTTCAAATGAGTTTTCAGGTAGACGTGCTTCTTCCACTGACCTGGTTGAACCAAAATCTGGTAGTCCAGAAGTGCCCCTTTCTGATAGTGAAAGCCAGGATCCAGAAAGCAATGAAAACTTGGAAGACCAGCCCAGTGATATGGAACTGGTGGAACCTCAACCTACCAAGTCAGTTGTAGTTTCAAACAAGTTGTCTGGTAGAGGTTCTTCATGGTGCCAGCAATCCTCATGGACACAGTTAGTTAATGATAATACTGACACTTCATTTAGCATAAAACAAATTGTGCCAGGTATCTCTTCTGAACAGCAGGTCCTTCCAAACCCCAAAGGTGCTGATCCTGTGAGCTCCACTGACGGCAAGCTTATGGAGATGGTAAAACAAGATAATGACAAGGGCAGGTCTTGTTTAGGAATTGGAAGAGAAGACAGTGTTTTACTAGGTAGTCTAGAAGATACTATAGTAGACAACGATGGTGCTTATGATCCAGATGTGGGGAAAATTTGTGATATAACACCAAAGCAAGCATCTGCGGCAAATATTGAGATAGGTGAAACTTGCTCATTTATGAGGACTGCTTCTTCGTTGAAGGAATGGGCGAAAATCAAGGTTGCTCTAAGTGGATCATTGAAAAAAAAGAATGCTGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

733

Amino Acids

80.31

Weight (kDa)

5.08

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58130
fragaria_vesca	FvH4_4g00130 FvH4_4g00130 FvH4_4g00130 FvH4_4g00130 FvH4_4g00130
malus_domestica	MD04G1000700.v1.1
prunus_persica	Prupe.1G000700_v2.0.a1
pyrus_communis	pycom04g00110
rosa_chinensis	RchiOBHm_Chr4g0384741 RchiOBHm_Chr5g0003141
rosa_laevigata	RLG00000010276
rosa_multiflora	Rmu_sc0000146.1_g000020 Rmu_sc0000146.1_g000021 Rmu_sc0001322.1_g000020
rosa_roxburghii	Rroxscaffold_5G00332800
rosa_rugosa	Rorug03G0297400
rosa_samantha	Rh4AG000800 Rh4BG000700 Rh4CG000600 Rh4DG000700
rosa_wichuraiana	Rw0G022000 Rw4G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	156, 1503, 1846, 1935
AccB1I	GGYRCC	1 cut(s)	1761
AccB7I	CCANNNNNTGG	3 cut(s)	1294, 1468, 1604
AccI	GTMKAC	3 cut(s)	228, 1567, 2010
AccII	CGCG	2 cut(s)	290, 354
AciI	CCGC	2 cut(s)	168, 2078
AclI	AACGTT	1 cut(s)	840
AclWI	GGATC	6 cut(s)	689, 1640, 1653, 1877, 2024, 2176
AcsI	RAATTY	5 cut(s)	890, 1051, 1082, 1545, 2046
AdeI	CACNNNGTG	1 cut(s)	941
AfaI	GTAC	5 cut(s)	130, 224, 278, 769, 1206
AfiI	CCNNNNNNNGG	7 cut(s)	521, 1015, 1115, 1294, 1468, 1604, 2039
AflIII	ACRYGT	2 cut(s)	109, 1201
AgsI	TTSAA	9 cut(s)	560, 1241, 1371, 1415, 1551, 1595, 1731, 2134, 2176
AhdI	GACNNNNNGTC	1 cut(s)	250
AjiI	CACGTC	1 cut(s)	1571
AjnI	CCWGG	6 cut(s)	855, 1287, 1461, 1587, 1641, 1834
AloI	GAACNNNNNNTCC	2 cut(s)	1842, 1874
Alw21I	GWGCWC	2 cut(s)	1096, 1895
Alw26I	GTCTC	3 cut(s)	850, 1143, 1150
AlwI	GGATC	6 cut(s)	689, 1640, 1653, 1877, 2024, 2176
ApeKI	GCWGC	8 cut(s)	371, 383, 386, 389, 453, 800, 1028, 1041
ApoI	RAATTY	5 cut(s)	890, 1051, 1082, 1545, 2046
ArsI	GACNNNNNNTTYG	4 cut(s)	1724, 1756, 2110, 2142
AseI	ATTAAT	1 cut(s)	960
Asp700I	GAANNNNTTC	1 cut(s)	1183
AspLEI	GCGC	2 cut(s)	290, 949
AspS9I	GGNCC	2 cut(s)	145, 1858
AsuC2I	CCSGG	1 cut(s)	1500
AsuHPI	GGTGA	4 cut(s)	262, 927, 1514, 2108
AvaII	GGWCC	2 cut(s)	145, 1858
BaeGI	GKGCMC	2 cut(s)	1443, 1623
BaeI	ACNNNNGTAYC	2 cut(s)	1992, 2025
BamHI	GGATCC	1 cut(s)	1645
BanI	GGYRCC	1 cut(s)	1761
BanII	GRGCYC	1 cut(s)	1895
BarI	GAAGNNNNNNTAC	8 cut(s)	215, 247, 1378, 1410, 1558, 1590, 1738, 1770
BbsI	GAAGAC	7 cut(s)	548, 828, 1140, 1323, 1497, 1677, 1977
Bbv12I	GWGCWC	2 cut(s)	1096, 1895
BbvCI	CCTCAGC	1 cut(s)	308
BbvI	GCAGC	8 cut(s)	358, 370, 373, 376, 465, 787, 1040, 1053
BccI	CCATC	8 cut(s)	68, 74, 758, 792, 1017, 1327, 1912, 2012
BceAI	ACGGC	1 cut(s)	1918
BciT130I	CCWGG	6 cut(s)	857, 1289, 1463, 1589, 1643, 1836
BciVI	GTATCC	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	1500
BcoDI	GTCTC	3 cut(s)	850, 1143, 1150
BfaI	CTAG	5 cut(s)	380, 642, 996, 1985, 1994
BfmI	CTRYAG	1 cut(s)	2004
BfuAI	ACCTGC	4 cut(s)	156, 1503, 1846, 1935
BfuI	GTATCC	1 cut(s)	99
BisI	GCNGC	9 cut(s)	372, 384, 387, 390, 454, 801, 1029, 1042, 2079
BlsI	GCNGC	9 cut(s)	373, 385, 388, 391, 455, 802, 1030, 1043, 2080
Bme1390I	CCNGG	7 cut(s)	857, 1289, 1463, 1500, 1589, 1643, 1836
Bme18I	GGWCC	2 cut(s)	145, 1858
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmgBI	CACGTC	1 cut(s)	1571
BmgT120I	GGNCC	2 cut(s)	145, 1858
BmiI	GGNNCC	7 cut(s)	175, 314, 1347, 1521, 1647, 1701, 1763
BmrFI	CCNGG	7 cut(s)	857, 1289, 1463, 1500, 1589, 1643, 1836
BmrI	ACTGGG	3 cut(s)	1057, 1320, 1674
BmsI	GCATC	5 cut(s)	222, 358, 397, 802, 2081
BmuI	ACTGGG	3 cut(s)	1057, 1320, 1674
BoxI	GACNNNNGTC	2 cut(s)	150, 713
BpiI	GAAGAC	7 cut(s)	548, 828, 1140, 1323, 1497, 1677, 1977
BpmI	CTGGAG	2 cut(s)	384, 832
Bpu10I	CCTNAGC	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	1500
Bsa29I	ATCGAT	1 cut(s)	684
BsaAI	YACGTR	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	1143
BsaJI	CCNNGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	8 cut(s)	69, 99, 117, 147, 162, 192, 830, 860
Bsc4I	CCNNNNNNNGG	7 cut(s)	521, 1015, 1115, 1294, 1468, 1604, 2039
Bse118I	RCCGGY	1 cut(s)	1211
Bse1I	ACTGG	8 cut(s)	526, 532, 1063, 1326, 1344, 1518, 1680, 1698
Bse3DI	GCAATG	4 cut(s)	1215, 1309, 1483, 1663
BseBI	CCWGG	6 cut(s)	857, 1289, 1463, 1589, 1643, 1836
BseCI	ATCGAT	1 cut(s)	684
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	162, 367
BseLI	CCNNNNNNNGG	7 cut(s)	521, 1015, 1115, 1294, 1468, 1604, 2039
BseMI	GCAATG	4 cut(s)	1215, 1309, 1483, 1663
BseMII	CTCAG	3 cut(s)	299, 1154, 2181
BseNI	ACTGG	8 cut(s)	526, 532, 1063, 1326, 1344, 1518, 1680, 1698
BseRI	GAGGAG	2 cut(s)	384, 387
BseSI	GKGCMC	2 cut(s)	1443, 1623
BseXI	GCAGC	8 cut(s)	358, 370, 373, 376, 465, 787, 1040, 1053
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	2 cut(s)	290, 354
BshNI	GGYRCC	1 cut(s)	1761
BshVI	ATCGAT	1 cut(s)	684
BsiHKAI	GWGCWC	2 cut(s)	1096, 1895
BsiSI	CCGG	3 cut(s)	165, 1212, 1500
BsiWI	CGTACG	1 cut(s)	222
BslFI	GGGAC	4 cut(s)	238, 593, 599, 1252
BslI	CCNNNNNNNGG	7 cut(s)	521, 1015, 1115, 1294, 1468, 1604, 2039
BsmAI	GTCTC	3 cut(s)	850, 1143, 1150
BsmFI	GGGAC	4 cut(s)	238, 593, 599, 1252
BsmI	GAATGC	1 cut(s)	2191
Bso31I	GGTCTC	1 cut(s)	1143
Bsp1286I	GDGCHC	4 cut(s)	1096, 1443, 1623, 1895
Bsp143I	GATC	8 cut(s)	681, 757, 929, 1102, 1645, 1882, 2029, 2168
BspACI	CCGC	2 cut(s)	168, 2078
BspCNI	CTCAG	3 cut(s)	300, 1153, 2182
BspDI	ATCGAT	1 cut(s)	684
BspFNI	CGCG	2 cut(s)	290, 354
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	7 cut(s)	175, 314, 1347, 1521, 1647, 1701, 1763
BspMI	ACCTGC	4 cut(s)	156, 1503, 1846, 1935
BspPI	GGATC	6 cut(s)	689, 1640, 1653, 1877, 2024, 2176
BspQI	GCTCTTC	2 cut(s)	272, 591
BspT107I	GGYRCC	1 cut(s)	1761
BspTNI	GGTCTC	1 cut(s)	1143
BsrDI	GCAATG	4 cut(s)	1215, 1309, 1483, 1663
BsrFI	RCCGGY	1 cut(s)	1211
BsrI	ACTGG	8 cut(s)	526, 532, 1063, 1326, 1344, 1518, 1680, 1698
BssAI	RCCGGY	1 cut(s)	1211
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	8 cut(s)	681, 757, 929, 1102, 1645, 1882, 2029, 2168
Bst2UI	CCWGG	6 cut(s)	857, 1289, 1463, 1589, 1643, 1836
Bst4CI	ACNGT	6 cut(s)	133, 178, 502, 593, 1785, 1976
Bst6I	CTCTTC	4 cut(s)	272, 591, 1849, 1960
BstBAI	YACGTR	1 cut(s)	276
BstC8I	GCNNGC	4 cut(s)	347, 1766, 1907, 2070
BstDEI	CTNAG	7 cut(s)	308, 494, 711, 972, 1140, 2162, 2190
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	162, 367
BstFNI	CGCG	2 cut(s)	290, 354
BstHHI	GCGC	2 cut(s)	290, 949
BstKTI	GATC	8 cut(s)	684, 760, 932, 1105, 1648, 1885, 2032, 2171
BstMAI	GTCTC	3 cut(s)	850, 1143, 1150
BstMBI	GATC	8 cut(s)	681, 757, 929, 1102, 1645, 1882, 2029, 2168
BstMWI	GCNNNNNNNGC	5 cut(s)	351, 380, 389, 1226, 2078
BstNI	CCWGG	6 cut(s)	857, 1289, 1463, 1589, 1643, 1836
BstNSI	RCATGY	2 cut(s)	113, 1205
BstPAI	GACNNNNGTC	2 cut(s)	150, 713
BstSCI	CCNGG	7 cut(s)	855, 1287, 1461, 1498, 1587, 1641, 1834
BstSFI	CTRYAG	1 cut(s)	2004
BstSLI	GKGCMC	2 cut(s)	1443, 1623
BstUI	CGCG	2 cut(s)	290, 354
BstV1I	GCAGC	8 cut(s)	358, 370, 373, 376, 465, 787, 1040, 1053
BstV2I	GAAGAC	7 cut(s)	548, 828, 1140, 1323, 1497, 1677, 1977
BstX2I	RGATCY	1 cut(s)	1645
BstXI	CCANNNNNNTGG	3 cut(s)	1333, 1588, 1687
BstYI	RGATCY	1 cut(s)	1645
Bsu15I	ATCGAT	1 cut(s)	684
BsuI	GTATCC	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	684
BtgI	CCRYGG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	1571
BtsCI	GGATG	2 cut(s)	162, 367
BtsIMutI	CAGTG	7 cut(s)	900, 1333, 1401, 1581, 1687, 1896, 1981
BveI	ACCTGC	4 cut(s)	156, 1503, 1846, 1935
Cac8I	GCNNGC	4 cut(s)	347, 1766, 1907, 2070
CciI	TCATGA	1 cut(s)	760
CfoI	GCGC	2 cut(s)	290, 949
Cfr10I	RCCGGY	1 cut(s)	1211
Cfr13I	GGNCC	2 cut(s)	145, 1858
ClaI	ATCGAT	1 cut(s)	684
CseI	GACGC	2 cut(s)	140, 542
CsiI	ACCWGGT	1 cut(s)	1587
Csp6I	GTAC	5 cut(s)	129, 223, 277, 768, 1205
CviAII	CATG	7 cut(s)	110, 413, 718, 761, 1202, 1758, 1776
CviQI	GTAC	5 cut(s)	129, 223, 277, 768, 1205
DdeI	CTNAG	7 cut(s)	308, 494, 711, 972, 1140, 2162, 2190
DpnI	GATC	8 cut(s)	683, 759, 931, 1104, 1647, 1884, 2031, 2170
DpnII	GATC	8 cut(s)	681, 757, 929, 1102, 1645, 1882, 2029, 2168
DraI	TTTAAA	1 cut(s)	895
DraIII	CACNNNGTG	1 cut(s)	941
DriI	GACNNNNNGTC	1 cut(s)	250
Eam1104I	CTCTTC	4 cut(s)	272, 591, 1849, 1960
Eam1105I	GACNNNNNGTC	1 cut(s)	250
EarI	CTCTTC	4 cut(s)	272, 591, 1849, 1960
EciI	GGCGGA	1 cut(s)	183
Ecl136II	GAGCTC	1 cut(s)	1893
Eco24I	GRGCYC	1 cut(s)	1895
Eco31I	GGTCTC	1 cut(s)	1143
Eco47I	GGWCC	2 cut(s)	145, 1858
Eco53kI	GAGCTC	1 cut(s)	1893
EcoICRI	GAGCTC	1 cut(s)	1893
EcoO109I	RGGNCCY	1 cut(s)	1858
EcoRII	CCWGG	6 cut(s)	855, 1287, 1461, 1587, 1641, 1834
EcoT38I	GRGCYC	1 cut(s)	1895
FaeI	CATG	7 cut(s)	113, 416, 721, 764, 1205, 1761, 1779
FaqI	GGGAC	4 cut(s)	238, 593, 599, 1252
FatI	CATG	7 cut(s)	109, 412, 717, 760, 1201, 1757, 1775
FblI	GTMKAC	3 cut(s)	228, 1567, 2010
Fnu4HI	GCNGC	9 cut(s)	372, 384, 387, 390, 454, 801, 1029, 1042, 2079
FokI	GGATG	2 cut(s)	169, 374
FriOI	GRGCYC	1 cut(s)	1895
Fsp4HI	GCNGC	9 cut(s)	372, 384, 387, 390, 454, 801, 1029, 1042, 2079
FspBI	CTAG	5 cut(s)	380, 642, 996, 1985, 1994
GlaI	GCGC	2 cut(s)	289, 948
GluI	GCNGC	9 cut(s)	372, 384, 387, 390, 454, 801, 1029, 1042, 2079
GsuI	CTGGAG	2 cut(s)	384, 832
HapII	CCGG	3 cut(s)	165, 1212, 1500
HgaI	GACGC	2 cut(s)	140, 542
HhaI	GCGC	2 cut(s)	290, 949
Hin1II	CATG	7 cut(s)	113, 416, 721, 764, 1205, 1761, 1779
Hin6I	GCGC	2 cut(s)	288, 947
HinP1I	GCGC	2 cut(s)	288, 947
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	2 cut(s)	507, 1907
HinfI	GANTC	2 cut(s)	23, 100
HpaII	CCGG	3 cut(s)	165, 1212, 1500
HphI	GGTGA	4 cut(s)	262, 927, 1514, 2108
Hpy166II	GTNNAC	5 cut(s)	145, 190, 229, 1568, 2011
Hpy188III	TCNNGA	8 cut(s)	401, 761, 887, 1077, 1613, 1649, 1994, 2033
Hpy8I	GTNNAC	5 cut(s)	145, 190, 229, 1568, 2011
Hpy99I	CGWCG	3 cut(s)	156, 230, 248
HpyAV	CCTTC	8 cut(s)	249, 289, 576, 627, 1001, 1233, 1871, 2128
HpyCH4III	ACNGT	6 cut(s)	133, 178, 502, 593, 1785, 1976
HpyCH4IV	ACGT	4 cut(s)	225, 275, 840, 1570
HpyCH4V	TGCA	5 cut(s)	43, 349, 410, 491, 793
HpyF10VI	GCNNNNNNNGC	5 cut(s)	351, 380, 389, 1226, 2078
HpyF3I	CTNAG	7 cut(s)	308, 494, 711, 972, 1140, 2162, 2190
HpySE526I	ACGT	4 cut(s)	225, 275, 840, 1570
Hsp92II	CATG	7 cut(s)	113, 416, 721, 764, 1205, 1761, 1779
HspAI	GCGC	2 cut(s)	288, 947
Kzo9I	GATC	8 cut(s)	681, 757, 929, 1102, 1645, 1882, 2029, 2168
LguI	GCTCTTC	2 cut(s)	272, 591
LmnI	GCTCC	5 cut(s)	318, 397, 1091, 1225, 1898
Lsp1109I	GCAGC	8 cut(s)	358, 370, 373, 376, 465, 787, 1040, 1053
LweI	GCATC	5 cut(s)	222, 358, 397, 802, 2081
MabI	ACCWGGT	1 cut(s)	1587
MaeI	CTAG	5 cut(s)	380, 642, 996, 1985, 1994
MaeII	ACGT	4 cut(s)	225, 275, 840, 1570
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	8 cut(s)	683, 759, 931, 1104, 1647, 1884, 2031, 2170
MboI	GATC	8 cut(s)	681, 757, 929, 1102, 1645, 1882, 2029, 2168
MfeI	CAATTG	1 cut(s)	1539
MflI	RGATCY	1 cut(s)	1645
MhlI	GDGCHC	4 cut(s)	1096, 1443, 1623, 1895
MmeI	TCCRAC	3 cut(s)	134, 267, 681
MroXI	GAANNNNTTC	1 cut(s)	1183
MseI	TTAA	5 cut(s)	420, 699, 894, 960, 1791
MspI	CCGG	3 cut(s)	165, 1212, 1500
MspR9I	CCNGG	7 cut(s)	857, 1289, 1463, 1500, 1589, 1643, 1836
MunI	CAATTG	1 cut(s)	1539
Mva1269I	GAATGC	1 cut(s)	2191
MvaI	CCWGG	6 cut(s)	857, 1289, 1463, 1589, 1643, 1836
MvnI	CGCG	2 cut(s)	290, 354
MwoI	GCNNNNNNNGC	5 cut(s)	351, 380, 389, 1226, 2078
NciI	CCSGG	1 cut(s)	1500
NdeII	GATC	8 cut(s)	681, 757, 929, 1102, 1645, 1882, 2029, 2168
NlaIII	CATG	7 cut(s)	113, 416, 721, 764, 1205, 1761, 1779
NlaIV	GGNNCC	7 cut(s)	175, 314, 1347, 1521, 1647, 1701, 1763
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	2 cut(s)	113, 1205
PagI	TCATGA	1 cut(s)	760
PciI	ACATGT	2 cut(s)	109, 1201
PciSI	GCTCTTC	2 cut(s)	272, 591
PctI	GAATGC	1 cut(s)	2191
PdmI	GAANNNNTTC	1 cut(s)	1183
PfeI	GAWTC	2 cut(s)	23, 100
Pfl23II	CGTACG	1 cut(s)	222
PflFI	GACNNNGTC	1 cut(s)	194
PflMI	CCANNNNNTGG	3 cut(s)	1294, 1468, 1604
PkrI	GCNGC	9 cut(s)	373, 385, 388, 391, 455, 802, 1030, 1043, 2080
Ppu21I	YACGTR	1 cut(s)	276
PpuMI	RGGWCCY	1 cut(s)	1858
PscI	ACATGT	2 cut(s)	109, 1201
PshAI	GACNNNNGTC	2 cut(s)	150, 713
PshBI	ATTAAT	1 cut(s)	960
Psp124BI	GAGCTC	1 cut(s)	1895
Psp1406I	AACGTT	1 cut(s)	840
Psp5II	RGGWCCY	1 cut(s)	1858
Psp6I	CCWGG	6 cut(s)	855, 1287, 1461, 1587, 1641, 1834
PspGI	CCWGG	6 cut(s)	855, 1287, 1461, 1587, 1641, 1834
PspLI	CGTACG	1 cut(s)	222
PspN4I	GGNNCC	7 cut(s)	175, 314, 1347, 1521, 1647, 1701, 1763
PspPI	GGNCC	2 cut(s)	145, 1858
PspPPI	RGGWCCY	1 cut(s)	1858
PsuI	RGATCY	1 cut(s)	1645
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	5 cut(s)	130, 224, 278, 769, 1206
RsaNI	GTAC	5 cut(s)	129, 223, 277, 768, 1205
SacI	GAGCTC	1 cut(s)	1895
SalI	GTCGAC	1 cut(s)	227
SapI	GCTCTTC	2 cut(s)	272, 591
SaqAI	TTAA	5 cut(s)	420, 699, 894, 960, 1791
SatI	GCNGC	9 cut(s)	372, 384, 387, 390, 454, 801, 1029, 1042, 2079
Sau3AI	GATC	8 cut(s)	681, 757, 929, 1102, 1645, 1882, 2029, 2168
Sau96I	GGNCC	2 cut(s)	145, 1858
ScrFI	CCNGG	7 cut(s)	857, 1289, 1463, 1500, 1589, 1643, 1836
SduI	GDGCHC	4 cut(s)	1096, 1443, 1623, 1895
SexAI	ACCWGGT	1 cut(s)	1587
SfaNI	GCATC	5 cut(s)	222, 358, 397, 802, 2081
SfcI	CTRYAG	1 cut(s)	2004
SinI	GGWCC	2 cut(s)	145, 1858
SmiI	ATTTAAAT	1 cut(s)	895
SsiI	CCGC	2 cut(s)	168, 2078
SspI	AATATT	2 cut(s)	958, 2086
SspMI	CTAG	5 cut(s)	380, 642, 996, 1985, 1994
SstI	GAGCTC	1 cut(s)	1895
StyD4I	CCNGG	7 cut(s)	855, 1287, 1461, 1498, 1587, 1641, 1834
SwaI	ATTTAAAT	1 cut(s)	895
TaaI	ACNGT	6 cut(s)	133, 178, 502, 593, 1785, 1976
TaiI	ACGT	4 cut(s)	228, 278, 843, 1573
TaqI	TCGA	4 cut(s)	228, 376, 684, 756
TatI	WGTACW	1 cut(s)	1204
TauI	GCSGC	1 cut(s)	2081
TfiI	GAWTC	2 cut(s)	23, 100
Tru1I	TTAA	5 cut(s)	420, 699, 894, 960, 1791
Tru9I	TTAA	5 cut(s)	420, 699, 894, 960, 1791
TscAI	CASTG	7 cut(s)	907, 1333, 1408, 1588, 1687, 1903, 1981
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	8 cut(s)	371, 383, 386, 389, 453, 800, 1028, 1041
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	7 cut(s)	378, 759, 978, 1176, 1674, 1746, 1800
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	7 cut(s)	907, 1333, 1408, 1588, 1687, 1903, 1981
Tth111I	GACNNNGTC	1 cut(s)	194
Van91I	CCANNNNNTGG	3 cut(s)	1294, 1468, 1604
VpaK11BI	GGWCC	2 cut(s)	145, 1858
VspI	ATTAAT	1 cut(s)	960
XapI	RAATTY	5 cut(s)	890, 1051, 1082, 1545, 2046
XbaI	TCTAGA	1 cut(s)	1993
XceI	RCATGY	2 cut(s)	113, 1205
XmiI	GTMKAC	3 cut(s)	228, 1567, 2010
XmnI	GAANNNNTTC	1 cut(s)	1183
XspI	CTAG	5 cut(s)	380, 642, 996, 1985, 1994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.