Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000146.1

Orthogroup ID

OG0008400

Physical Location & Seq

Genomic Coordinates Forward (+)

62919 .. 64310

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000146.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ctgttgagatggaagtggaacaacaaggaagagagcgaatattcgttggggggtttgggagagagcgtgacggaagacgatctgaaaagcctgttcaccggagttggaggaagcgtcgacggaatcgatataatcataaccaaaggccatagctttacttacgtcgactttctgccttgctcagacaagtccctctccaagctcttcgccacgtataatgggtgcgtttggaagggtgggaagctgaagctccacaaggctaaagaacattatcttgttcgtttgagacgagaatgggctgaacaagaaaatgctcaacttgctgctgaacttaagcagcacaccacccaagaagctaaaactgcttcacaacacagcaccaagcagcttcacttattctttcctgctctaagaaccgtgaaagctttgccctttagtggaactggcaagcacaaatacagtttccaacgtgttcaagttccttctctcccccttcatttctgtgactgtgaagagcatgctgtttctgacccttgtcctgatcaacaaaaccaattacctgaccatgttatcaatgacaaagagcttagtataatgaataaagtaatggacaagctcttacaaatggaattggaacatgtttctgatgatgctgatcacaatactaccgcctcccctctgcctcggcctcggcctctgcctagtcaacaacatcgtgagcttcatcttcctactgaagcggaagctgaggaagacgacctcataattaatattgtgtcaagtaaacatgaagaaaacatagtattggccttggaggaattgagatccagcggaacacaggtgtgcagtaagattaatggacctcctaacaaaaagaggaaatcccttctcaacaagaattacaatgaaatagaattggagcctgatatccctggctcaaagaccgattctaaatctcaaccagataaaccagagctgggtgtccaacaatccactgccccggtttcatggtctcagaaatgttcatggagacaacttttcggtcatagggacaacagtgggttcagtgtctcacatgtactgacaggcagatcttcttctagtgaccaaatggagcccaaatctggcagttccgatgtgcaccagtctgaggacctggcaagtgacggaaactcagaagaactgctgtttgagatggaaccacttaagggaagatcagaacataaacctaccaaggcggtatctgactcatatgagtcgggtagagttccttcatggcatcaggaattatctctgacacaattgactgatgagaatactgggagtgtaactgaacaggcccagccaaactctggttctggtgcttttgaagtgccccattctgacagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

463

Amino Acids

51.63

Weight (kDa)

5.56

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58130
fragaria_vesca	FvH4_4g00130 FvH4_4g00130 FvH4_4g00130 FvH4_4g00130 FvH4_4g00130
malus_domestica	MD04G1000700.v1.1
prunus_persica	Prupe.1G000700_v2.0.a1
pyrus_communis	pycom04g00110
rosa_chinensis	RchiOBHm_Chr4g0384741 RchiOBHm_Chr5g0003141
rosa_laevigata	RLG00000010276
rosa_multiflora	Rmu_sc0000146.1_g000020 Rmu_sc0000146.1_g000021 Rmu_sc0001322.1_g000020
rosa_roxburghii	Rroxscaffold_5G00332800
rosa_rugosa	Rorug03G0297400
rosa_samantha	Rh4AG000800 Rh4BG000700 Rh4CG000600 Rh4DG000700
rosa_wichuraiana	Rw0G022000 Rw4G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1352
AccI	GTMKAC	2 cut(s)	117, 165
AciI	CCGC	4 cut(s)	669, 740, 831, 1238
AclWI	GGATC	1 cut(s)	819
AcuI	CTGAAG	2 cut(s)	266, 756
AfaI	GTAC	1 cut(s)	1080
AfiI	CCNNNNNNNGG	6 cut(s)	437, 977, 1124, 1150, 1208, 1352
AflII	CTTAAG	2 cut(s)	332, 1205
AflIII	ACRYGT	3 cut(s)	469, 637, 1075
AgsI	TTSAA	2 cut(s)	476, 1370
AjnI	CCWGG	2 cut(s)	931, 1155
AjuI	GAANNNNNNNTTGG	2 cut(s)	1339, 1371
AleI	CACNNNNGTG	1 cut(s)	841
Alw21I	GWGCWC	1 cut(s)	1143
Alw26I	GTCTC	4 cut(s)	280, 1017, 1024, 1075
Alw44I	GTGCAC	1 cut(s)	1139
AlwI	GGATC	1 cut(s)	819
AoxI	GGCC	5 cut(s)	145, 686, 692, 807, 1338
ApaLI	GTGCAC	1 cut(s)	1139
ApeKI	GCWGC	3 cut(s)	323, 337, 385
AseI	ATTAAT	2 cut(s)	768, 855
AspS9I	GGNCC	3 cut(s)	860, 1153, 1339
AsuC2I	CCSGG	1 cut(s)	1001
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	860, 1153
BaeGI	GKGCMC	2 cut(s)	1143, 1377
BanII	GRGCYC	1 cut(s)	1119
BarI	GAAGNNNNNNTAC	2 cut(s)	1255, 1287
BbsI	GAAGAC	2 cut(s)	81, 759
Bbv12I	GWGCWC	1 cut(s)	1143
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	3 cut(s)	310, 349, 397
BccI	CCATC	2 cut(s)	3, 1189
BciT130I	CCWGG	2 cut(s)	933, 1157
BclI	TGATCA	2 cut(s)	541, 655
BcnI	CCSGG	1 cut(s)	1001
BcoDI	GTCTC	4 cut(s)	280, 1017, 1024, 1075
BfaI	CTAG	2 cut(s)	702, 1101
BfrI	CTTAAG	2 cut(s)	332, 1205
BglII	AGATCT	1 cut(s)	1091
BisI	GCNGC	3 cut(s)	324, 338, 386
BlsI	GCNGC	3 cut(s)	325, 339, 387
Bme1390I	CCNGG	3 cut(s)	933, 1001, 1157
Bme18I	GGWCC	2 cut(s)	860, 1153
BmgT120I	GGNCC	3 cut(s)	860, 1153, 1339
BmiI	GGNNCC	3 cut(s)	921, 1116, 1200
BmrFI	CCNGG	3 cut(s)	933, 1001, 1157
BmrI	ACTGGG	1 cut(s)	1329
BmsI	GCATC	2 cut(s)	640, 1288
BmuI	ACTGGG	1 cut(s)	1329
BoxI	GACNNNNGTC	1 cut(s)	534
BpiI	GAAGAC	2 cut(s)	81, 759
Bpu10I	CCTNAGC	1 cut(s)	747
BpuMI	CCSGG	1 cut(s)	1001
Bsa29I	ATCGAT	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	654
BsaI	GGTCTC	1 cut(s)	1017
BsaJI	CCNNGG	6 cut(s)	683, 689, 810, 931, 999, 1233
BsaWI	WCCGGW	1 cut(s)	98
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 99, 129
Bsc4I	CCNNNNNNNGG	6 cut(s)	437, 977, 1124, 1150, 1208, 1352
Bse1I	ACTGG	3 cut(s)	448, 1144, 1324
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	2 cut(s)	933, 1157
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	6 cut(s)	683, 689, 810, 931, 999, 1233
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	6 cut(s)	437, 977, 1124, 1150, 1208, 1352
BseMII	CTCAG	5 cut(s)	195, 738, 1028, 1140, 1188
BseNI	ACTGG	3 cut(s)	448, 1144, 1324
BseSI	GKGCMC	2 cut(s)	1143, 1377
BseXI	GCAGC	3 cut(s)	310, 349, 397
BseYI	CCCAGC	2 cut(s)	976, 1341
BsgI	GTGCAG	1 cut(s)	865
BshFI	GGCC	5 cut(s)	147, 688, 694, 809, 1340
BshVI	ATCGAT	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	1143
BsiSI	CCGG	2 cut(s)	99, 1001
BslFI	GGGAC	2 cut(s)	175, 1064
BslI	CCNNNNNNNGG	6 cut(s)	437, 977, 1124, 1150, 1208, 1352
BsmAI	GTCTC	4 cut(s)	280, 1017, 1024, 1075
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	2 cut(s)	175, 1064
BsnI	GGCC	5 cut(s)	147, 688, 694, 809, 1340
Bso31I	GGTCTC	1 cut(s)	1017
Bsp1286I	GDGCHC	3 cut(s)	1119, 1143, 1377
Bsp143I	GATC	6 cut(s)	79, 541, 655, 824, 1091, 1214
BspACI	CCGC	4 cut(s)	669, 740, 831, 1238
BspANI	GGCC	5 cut(s)	147, 688, 694, 809, 1340
BspCNI	CTCAG	5 cut(s)	194, 739, 1027, 1141, 1187
BspDI	ATCGAT	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	921, 1116, 1200
BspPI	GGATC	1 cut(s)	819
BspQI	GCTCTTC	2 cut(s)	209, 507
BspTI	CTTAAG	2 cut(s)	332, 1205
BspTNI	GGTCTC	1 cut(s)	1017
BsrI	ACTGG	3 cut(s)	448, 1144, 1324
BssECI	CCNNGG	6 cut(s)	683, 689, 810, 931, 999, 1233
BssMI	GATC	6 cut(s)	79, 541, 655, 824, 1091, 1214
BssT1I	CCWWGG	2 cut(s)	810, 1233
Bst2UI	CCWGG	2 cut(s)	933, 1157
Bst4CI	ACNGT	4 cut(s)	418, 461, 509, 1058
Bst6I	CTCTTC	3 cut(s)	24, 209, 507
BstAFI	CTTAAG	2 cut(s)	332, 1205
BstBAI	YACGTR	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	449, 519
BstDEI	CTNAG	7 cut(s)	181, 410, 587, 747, 1014, 1149, 1174
BstKTI	GATC	6 cut(s)	82, 544, 658, 827, 1094, 1217
BstMAI	GTCTC	4 cut(s)	280, 1017, 1024, 1075
BstMBI	GATC	6 cut(s)	79, 541, 655, 824, 1091, 1214
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 362
BstNI	CCWGG	2 cut(s)	933, 1157
BstNSI	RCATGY	3 cut(s)	521, 641, 1079
BstPAI	GACNNNNGTC	1 cut(s)	534
BstSCI	CCNGG	3 cut(s)	931, 999, 1155
BstSLI	GKGCMC	2 cut(s)	1143, 1377
BstV1I	GCAGC	3 cut(s)	310, 349, 397
BstV2I	GAAGAC	2 cut(s)	81, 759
BstX2I	RGATCY	2 cut(s)	824, 1091
BstYI	RGATCY	2 cut(s)	824, 1091
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	5 cut(s)	147, 688, 694, 809, 1340
BsuTUI	ATCGAT	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	993
BtsIMutI	CAGTG	3 cut(s)	993, 1063, 1072
Cac8I	GCNNGC	2 cut(s)	449, 519
Cfr13I	GGNCC	3 cut(s)	860, 1153, 1339
ClaI	ATCGAT	1 cut(s)	126
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	1079
CviAII	CATG	8 cut(s)	518, 566, 638, 788, 1008, 1026, 1076, 1275
CviQI	GTAC	1 cut(s)	1079
DdeI	CTNAG	7 cut(s)	181, 410, 587, 747, 1014, 1149, 1174
DpnI	GATC	6 cut(s)	81, 543, 657, 826, 1093, 1216
DpnII	GATC	6 cut(s)	79, 541, 655, 824, 1091, 1214
Eam1104I	CTCTTC	3 cut(s)	24, 209, 507
EarI	CTCTTC	3 cut(s)	24, 209, 507
Eco130I	CCWWGG	2 cut(s)	810, 1233
Eco24I	GRGCYC	1 cut(s)	1119
Eco31I	GGTCTC	1 cut(s)	1017
Eco32I	GATATC	1 cut(s)	928
Eco47I	GGWCC	2 cut(s)	860, 1153
Eco57I	CTGAAG	2 cut(s)	266, 756
EcoO109I	RGGNCCY	1 cut(s)	1153
EcoRII	CCWGG	2 cut(s)	931, 1155
EcoRV	GATATC	1 cut(s)	928
EcoT14I	CCWWGG	2 cut(s)	810, 1233
EcoT38I	GRGCYC	1 cut(s)	1119
ErhI	CCWWGG	2 cut(s)	810, 1233
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	8 cut(s)	521, 569, 641, 791, 1011, 1029, 1079, 1278
FaqI	GGGAC	2 cut(s)	175, 1064
FatI	CATG	8 cut(s)	517, 565, 637, 787, 1007, 1025, 1075, 1274
FauNDI	CATATG	1 cut(s)	1252
FbaI	TGATCA	2 cut(s)	541, 655
FblI	GTMKAC	2 cut(s)	117, 165
Fnu4HI	GCNGC	3 cut(s)	324, 338, 386
FriOI	GRGCYC	1 cut(s)	1119
Fsp4HI	GCNGC	3 cut(s)	324, 338, 386
FspBI	CTAG	2 cut(s)	702, 1101
GluI	GCNGC	3 cut(s)	324, 338, 386
GsaI	CCCAGC	2 cut(s)	980, 1345
HaeIII	GGCC	5 cut(s)	147, 688, 694, 809, 1340
HapII	CCGG	2 cut(s)	99, 1001
HgaI	GACGC	1 cut(s)	103
Hin1II	CATG	8 cut(s)	521, 569, 641, 791, 1011, 1029, 1079, 1278
HincII	GTYRAC	3 cut(s)	118, 166, 707
HindII	GTYRAC	3 cut(s)	118, 166, 707
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	4 cut(s)	123, 947, 1247, 1256
HpaII	CCGG	2 cut(s)	99, 1001
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	6 cut(s)	96, 118, 166, 707, 785, 1141
Hpy188III	TCNNGA	3 cut(s)	539, 716, 1283
Hpy8I	GTNNAC	6 cut(s)	96, 118, 166, 707, 785, 1141
Hpy99I	CGWCG	3 cut(s)	119, 122, 167
HpyAV	CCTTC	5 cut(s)	226, 492, 503, 896, 1281
HpyCH4III	ACNGT	4 cut(s)	418, 461, 509, 1058
HpyCH4IV	ACGT	3 cut(s)	162, 212, 469
HpyCH4V	TGCA	2 cut(s)	846, 1141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 362
HpyF3I	CTNAG	7 cut(s)	181, 410, 587, 747, 1014, 1149, 1174
HpySE526I	ACGT	3 cut(s)	162, 212, 469
Hsp92II	CATG	8 cut(s)	521, 569, 641, 791, 1011, 1029, 1079, 1278
Ksp22I	TGATCA	2 cut(s)	541, 655
Kzo9I	GATC	6 cut(s)	79, 541, 655, 824, 1091, 1214
LguI	GCTCTTC	2 cut(s)	209, 507
LmnI	GCTCC	3 cut(s)	255, 919, 1114
Lsp1109I	GCAGC	3 cut(s)	310, 349, 397
LweI	GCATC	2 cut(s)	640, 1288
MaeI	CTAG	2 cut(s)	702, 1101
MaeII	ACGT	3 cut(s)	162, 212, 469
MaeIII	GTNAC	5 cut(s)	67, 503, 1103, 1163, 1327
MalI	GATC	6 cut(s)	81, 543, 657, 826, 1093, 1216
MboI	GATC	6 cut(s)	79, 541, 655, 824, 1091, 1214
MfeI	CAATTG	1 cut(s)	1301
MflI	RGATCY	2 cut(s)	824, 1091
MhlI	GDGCHC	3 cut(s)	1119, 1143, 1377
MluCI	AATT	8 cut(s)	554, 629, 765, 818, 898, 914, 1286, 1301
MlyI	GAGTC	2 cut(s)	1241, 1265
MmeI	TCCRAC	3 cut(s)	85, 490, 1009
MseI	TTAA	4 cut(s)	333, 768, 855, 1206
MslI	CAYNNNNRTG	2 cut(s)	501, 841
MspA1I	CMGCKG	1 cut(s)	831
MspCI	CTTAAG	2 cut(s)	332, 1205
MspI	CCGG	2 cut(s)	99, 1001
MspR9I	CCNGG	3 cut(s)	933, 1001, 1157
MunI	CAATTG	1 cut(s)	1301
MvaI	CCWGG	2 cut(s)	933, 1157
MwoI	GCNNNNNNNGC	2 cut(s)	320, 362
NciI	CCSGG	1 cut(s)	1001
NdeI	CATATG	1 cut(s)	1252
NdeII	GATC	6 cut(s)	79, 541, 655, 824, 1091, 1214
NlaIII	CATG	8 cut(s)	521, 569, 641, 791, 1011, 1029, 1079, 1278
NlaIV	GGNNCC	3 cut(s)	921, 1116, 1200
NmeAIII	GCCGAG	2 cut(s)	664, 670
NmuCI	GTSAC	4 cut(s)	67, 503, 1103, 1163
NspI	RCATGY	3 cut(s)	521, 641, 1079
OliI	CACNNNNGTG	1 cut(s)	841
PaeI	GCATGC	1 cut(s)	521
PciI	ACATGT	2 cut(s)	637, 1075
PciSI	GCTCTTC	2 cut(s)	209, 507
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 286
PfeI	GAWTC	2 cut(s)	123, 947
PflMI	CCANNNNNTGG	1 cut(s)	1352
PkrI	GCNGC	3 cut(s)	325, 339, 387
PleI	GAGTC	2 cut(s)	1241, 1264
PpsI	GAGTC	2 cut(s)	1241, 1264
Ppu21I	YACGTR	1 cut(s)	213
PpuMI	RGGWCCY	1 cut(s)	1153
PscI	ACATGT	2 cut(s)	637, 1075
PshAI	GACNNNNGTC	1 cut(s)	534
PshBI	ATTAAT	2 cut(s)	768, 855
Psp5II	RGGWCCY	1 cut(s)	1153
Psp6I	CCWGG	2 cut(s)	931, 1155
PspFI	CCCAGC	2 cut(s)	976, 1341
PspGI	CCWGG	2 cut(s)	931, 1155
PspN4I	GGNNCC	3 cut(s)	921, 1116, 1200
PspPI	GGNCC	3 cut(s)	860, 1153, 1339
PspPPI	RGGWCCY	1 cut(s)	1153
PsuI	RGATCY	2 cut(s)	824, 1091
RsaI	GTAC	1 cut(s)	1080
RsaNI	GTAC	1 cut(s)	1079
RseI	CAYNNNNRTG	2 cut(s)	501, 841
SalI	GTCGAC	2 cut(s)	116, 164
SapI	GCTCTTC	2 cut(s)	209, 507
SaqAI	TTAA	4 cut(s)	333, 768, 855, 1206
SatI	GCNGC	3 cut(s)	324, 338, 386
Sau3AI	GATC	6 cut(s)	79, 541, 655, 824, 1091, 1214
Sau96I	GGNCC	3 cut(s)	860, 1153, 1339
SchI	GAGTC	2 cut(s)	1241, 1265
ScrFI	CCNGG	3 cut(s)	933, 1001, 1157
SduI	GDGCHC	3 cut(s)	1119, 1143, 1377
SfaNI	GCATC	2 cut(s)	640, 1288
SgrDI	CGTCGACG	1 cut(s)	116
SinI	GGWCC	2 cut(s)	860, 1153
SmiMI	CAYNNNNRTG	2 cut(s)	501, 841
SmlI	CTYRAG	2 cut(s)	332, 1205
SmoI	CTYRAG	2 cut(s)	332, 1205
SphI	GCATGC	1 cut(s)	521
Sse9I	AATT	8 cut(s)	554, 629, 765, 818, 898, 914, 1286, 1301
SsiI	CCGC	4 cut(s)	669, 740, 831, 1238
SspI	AATATT	2 cut(s)	41, 772
SspMI	CTAG	2 cut(s)	702, 1101
StyD4I	CCNGG	3 cut(s)	931, 999, 1155
StyI	CCWWGG	2 cut(s)	810, 1233
TaaI	ACNGT	4 cut(s)	418, 461, 509, 1058
TaiI	ACGT	3 cut(s)	165, 215, 472
TaqI	TCGA	3 cut(s)	117, 126, 165
TaqII	GACCGA	2 cut(s)	959, 1031
TasI	AATT	8 cut(s)	554, 629, 765, 818, 898, 914, 1286, 1301
TatI	WGTACW	1 cut(s)	1078
TfiI	GAWTC	2 cut(s)	123, 947
Tru1I	TTAA	4 cut(s)	333, 768, 855, 1206
Tru9I	TTAA	4 cut(s)	333, 768, 855, 1206
TscAI	CASTG	3 cut(s)	1000, 1063, 1072
TseFI	GTSAC	4 cut(s)	67, 503, 1103, 1163
TseI	GCWGC	3 cut(s)	323, 337, 385
Tsp45I	GTSAC	4 cut(s)	67, 503, 1103, 1163
TspDTI	ATGAA	8 cut(s)	485, 611, 713, 804, 921, 996, 1014, 1263
TspGWI	ACGGA	3 cut(s)	86, 135, 1182
TspRI	CASTG	3 cut(s)	1000, 1063, 1072
Van91I	CCANNNNNTGG	1 cut(s)	1352
Vha464I	CTTAAG	2 cut(s)	332, 1205
VneI	GTGCAC	1 cut(s)	1139
VpaK11BI	GGWCC	2 cut(s)	860, 1153
VspI	ATTAAT	2 cut(s)	768, 855
XceI	RCATGY	3 cut(s)	521, 641, 1079
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1349
XmiI	GTMKAC	2 cut(s)	117, 165
XspI	CTAG	2 cut(s)	702, 1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.