Rroxscaffold_5G00332800

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008400
Physical Location & Seq
Reverse (-)
168580 .. 171197
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00332800.1

Sequence Viewer

Length: 1953 bp
ATGGAAGTGGAACAAGGAGGAGGAAGAGAGCGAATATTCGTTGGGGGTTTGGGAGAGAGCGTGACGGAAGACGATCTGCAAAGGCTGTTCACCGGAGTTGGAGGAAGCGTCGACGGAATCGATATAATCAGAACCAAAGGCCGTAGCTTTGCTTACGTCGACTTTCTGCCTTGCTCAGACAAGTCCCTCTCCAAGCTCTTCGCCACGTATAATGGGTGCGTTTGGAAGGGCGGGAAGCTGAAGCTCCACAAGGCTAAAGAACATTATCTTGTTCGTTTGAGACGAGAATGGGCTGAACAAGAAAATGCTCAAATTAAGCAGCACACCACCCAAGAAGAAGCTAAAACTGCTTCACAACACAGCACCAAGCAGCTTCGCTTATTCTTTCCTGCTCTAAGAACCGTGAAAGCTTTGCCCTTTAGTGGAACTGGCAAGCACAAATACAGTTTCCAACGTGTTCAAGTTCCTTCTCTCCCCCTTCATTTCTGTGACTGTGAAGAGCATGCTGTTTCTGACCCTTCTCCTGATCAACAAAACCAATTACCTGACCATGTTATCAATGACAAGGAGCTTAGTATAATGAATAAAGTAATGGACAAGCTCTTACAAAAGGAATTGGAACATGTTTCTGATGATGCTGATCACAATACTACCGCCTCCCCTCTGCCTCGGCCTCTGCCTAGTCAGCAACATCATGAGCTTCATCTTCCTACTGAAGCAGAAGCTGAGGAAGACGACCTCATAATTAATATTGTGTCAAGTAAACATGAAGAAAACATAGTATCGGCCTTGGAGGAATTGAGATCCAGCGGAACACAGGTGTGCAGTAAGATTAATGGAGCTCCTAACAAAAAGAGGAAATCCCTTCTCAACAAGAATTACAATGAAATAGAATTGGAGCCTGATATCCCTGGCTCAAATACCGATTCTAAATCTCAACCAGATAAACCAGAGCTGGGTGTCCAACAATCCACTGCCCCGGTTTCATGGTCTCAGAAATGTTCATGGAGACAACTTGTCGGTCATAGGGACAACAGTGGGTTCAGTGTCTCACATATACTGACAGGCAGATCTTCTTCTAGTGACCAAATGGAGCCCAAATCTGGCAGTTCCGATGTGCACCAGTCTGAGGACCTGGCAAGTGACGGAAACTCAGAAGAACTGCTGTCTGAGATGGAACCACTTAAGGGAAGATCAGAACATAAACCTACCAAGTCGGTATCTGACTCATATGATTCGGGTAGAGTTCCTTCATGGCATCAAGAATTATCTCTGACACAATTGACTGATGAGAATACTGGGAGTGTAACTGAACAGGCCCAGCCAAACTCTGGTTCTGGTGCTTTTGAAGTGCCCCATTCTGACAGCAAAAGCCAGGACTTGGCAAGGGATGGAAACTTGGAAGGCCAGCTCTGTGAGATGGAACCGGTGGAGGAGAATGCGGATCCTCAACCTCAAAATGCACTATCAAACTCAACTAAGTCAGGTAGAGGAGCTTCATGGCGCCAGAAATCGTCTTGGACACAATTGATTAATGACAATACTGGAAGCTCTTTCAGCATAACACAAGTTCTACCAGCTGGTATCTCTTTCAAGCAACAAGCCAGAGGTGTAGATGTCATGAGCTCTTTTGGCAGCAAGCTCAAGGAAACAGTAAAGCAAGATAAGAATAAACTTACTAGAGGTGATTCCTCTTCTTTGGGGATAATTGGAAAGGAGGGGGATGGTTTACCACGGAGTACTCCTAAAGAGAATCAACAGATTATTGCTGGCAATGACAATGCTGCAGATCTGGGGAAAATATGTGATTTGACACCAAAGCAAGCATCTACAGGCACTGTTGACAAAGGTAAAACCTGCTTATTTGTGAGAAGTGCTGCTTCATTAAATGAATGGGCGAAAGCTAAGGCTGCCCTAAGTGGGTCACGAAAAAGAAAGAACAGCAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

650

Amino Acids

71.28

Weight (kDa)

6.03

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 12 - 55 6.4e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1865
AccB1I GGYRCC 1 cut(s) 1503
AccB7I CCANNNNNTGG 2 cut(s) 1331, 1381
AccI GTMKAC 2 cut(s) 111, 159
AciI CCGC 4 cut(s) 231, 654, 810, 1442
AclWI GGATC 3 cut(s) 798, 1439, 1452
AcuI CTGAAG 2 cut(s) 260, 735
AcyI GRCGYC 1 cut(s) 1504
AfaI GTAC 1 cut(s) 1741
AfiI CCNNNNNNNGG 8 cut(s) 422, 956, 1103, 1129, 1187, 1331, 1381, 1920
AflII CTTAAG 1 cut(s) 1184
AflIII ACRYGT 2 cut(s) 454, 622
AgeI ACCGGT 1 cut(s) 1426
AgsI TTSAA 3 cut(s) 461, 1349, 1594
AhdI GACNNNNNGTC 1 cut(s) 1016
AjnI CCWGG 3 cut(s) 910, 1134, 1374
AjuI GAANNNNNNNTTGG 2 cut(s) 1318, 1350
AleI CACNNNNGTG 1 cut(s) 820
Alw21I GWGCWC 3 cut(s) 844, 1122, 1628
Alw26I GTCTC 4 cut(s) 274, 996, 1003, 1054
Alw44I GTGCAC 1 cut(s) 1118
AlwI GGATC 3 cut(s) 798, 1439, 1452
AlwNI CAGNNNCTG 2 cut(s) 725, 1838
AoxI GGCC 5 cut(s) 139, 671, 786, 1317, 1405
ApaLI GTGCAC 1 cut(s) 1118
ApeKI GCWGC 6 cut(s) 319, 370, 1635, 1784, 1877, 1910
AseI ATTAAT 3 cut(s) 747, 834, 1533
AsiGI ACCGGT 1 cut(s) 1426
AspLEI GCGC 1 cut(s) 1506
AspS9I GGNCC 2 cut(s) 1132, 1318
AsuC2I CCSGG 1 cut(s) 980
AsuHPI GGTGA 2 cut(s) 82, 1697
AvaII GGWCC 1 cut(s) 1132
BaeGI GKGCMC 2 cut(s) 1122, 1356
BamHI GGATCC 1 cut(s) 1444
BanI GGYRCC 1 cut(s) 1503
BanII GRGCYC 3 cut(s) 844, 1098, 1628
BarI GAAGNNNNNNTAC 4 cut(s) 1234, 1266, 1480, 1512
BbsI GAAGAC 2 cut(s) 75, 738
Bbv12I GWGCWC 3 cut(s) 844, 1122, 1628
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 6 cut(s) 331, 382, 1647, 1771, 1864, 1897
BccI CCATC 4 cut(s) 1168, 1385, 1414, 1718
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 3 cut(s) 912, 1136, 1376
BclI TGATCA 2 cut(s) 526, 640
BcnI CCSGG 1 cut(s) 980
BcoDI GTCTC 4 cut(s) 274, 996, 1003, 1054
BfaI CTAG 3 cut(s) 681, 1080, 1680
BfmI CTRYAG 2 cut(s) 1785, 1830
BfoI RGCGCY 1 cut(s) 1507
BfrI CTTAAG 1 cut(s) 1184
BfuAI ACCTGC 1 cut(s) 1865
BglII AGATCT 2 cut(s) 1070, 1789
BisI GCNGC 6 cut(s) 320, 371, 1636, 1785, 1878, 1911
BlsI GCNGC 6 cut(s) 321, 372, 1637, 1786, 1879, 1912
BmcAI AGTACT 1 cut(s) 1741
Bme1390I CCNGG 4 cut(s) 912, 980, 1136, 1376
Bme18I GGWCC 1 cut(s) 1132
BmeRI GACNNNNNGTC 1 cut(s) 1016
BmgT120I GGNCC 2 cut(s) 1132, 1318
BmiI GGNNCC 6 cut(s) 900, 1095, 1179, 1425, 1446, 1505
BmrFI CCNGG 4 cut(s) 912, 980, 1136, 1376
BmrI ACTGGG 1 cut(s) 1308
BmsI GCATC 3 cut(s) 625, 1267, 1835
BmuI ACTGGG 1 cut(s) 1308
BpiI GAAGAC 2 cut(s) 75, 738
Bpu10I CCTNAGC 2 cut(s) 726, 1905
BpuEI CTTGAG 1 cut(s) 1628
BpuMI CCSGG 1 cut(s) 980
Bsa29I ATCGAT 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 639
BsaHI GRCGYC 1 cut(s) 1504
BsaI GGTCTC 1 cut(s) 996
BsaJI CCNNGG 5 cut(s) 668, 789, 910, 978, 1733
BsaWI WCCGGW 2 cut(s) 92, 1426
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 93, 123
Bsc4I CCNNNNNNNGG 8 cut(s) 422, 956, 1103, 1129, 1187, 1331, 1381, 1920
Bse118I RCCGGY 1 cut(s) 1426
Bse1I ACTGG 4 cut(s) 433, 1123, 1303, 1549
Bse3DI GCAATG 1 cut(s) 1780
Bse8I GATNNNNATC 1 cut(s) 639
BseBI CCWGG 3 cut(s) 912, 1136, 1376
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 5 cut(s) 668, 789, 910, 978, 1733
BseGI GGATG 2 cut(s) 1396, 1729
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 8 cut(s) 422, 956, 1103, 1129, 1187, 1331, 1381, 1920
BseMI GCAATG 1 cut(s) 1780
BseMII CTCAG 6 cut(s) 189, 717, 1007, 1119, 1161, 1167
BseNI ACTGG 4 cut(s) 433, 1123, 1303, 1549
BseRI GAGGAG 3 cut(s) 33, 1448, 1506
BseSI GKGCMC 2 cut(s) 1122, 1356
BseXI GCAGC 6 cut(s) 331, 382, 1647, 1771, 1864, 1897
BseYI CCCAGC 2 cut(s) 955, 1320
BsgI GTGCAG 1 cut(s) 844
BshFI GGCC 5 cut(s) 141, 673, 788, 1319, 1407
BshNI GGYRCC 1 cut(s) 1503
BshTI ACCGGT 1 cut(s) 1426
BshVI ATCGAT 1 cut(s) 120
BsiHKAI GWGCWC 3 cut(s) 844, 1122, 1628
BsiSI CCGG 3 cut(s) 93, 980, 1427
BslFI GGGAC 2 cut(s) 169, 1043
BslI CCNNNNNNNGG 8 cut(s) 422, 956, 1103, 1129, 1187, 1331, 1381, 1920
BsmAI GTCTC 4 cut(s) 274, 996, 1003, 1054
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 2 cut(s) 169, 1043
BsmI GAATGC 1 cut(s) 1444
BsnI GGCC 5 cut(s) 141, 673, 788, 1319, 1407
Bso31I GGTCTC 1 cut(s) 996
Bsp1286I GDGCHC 5 cut(s) 844, 1098, 1122, 1356, 1628
Bsp143I GATC 8 cut(s) 73, 526, 640, 803, 1070, 1193, 1444, 1789
BspACI CCGC 4 cut(s) 231, 654, 810, 1442
BspANI GGCC 5 cut(s) 141, 673, 788, 1319, 1407
BspCNI CTCAG 6 cut(s) 188, 718, 1006, 1120, 1162, 1166
BspDI ATCGAT 1 cut(s) 120
BspHI TCATGA 2 cut(s) 694, 1620
BspLI GGNNCC 6 cut(s) 900, 1095, 1179, 1425, 1446, 1505
BspMAI CTGCAG 1 cut(s) 1789
BspMI ACCTGC 1 cut(s) 1865
BspPI GGATC 3 cut(s) 798, 1439, 1452
BspQI GCTCTTC 2 cut(s) 203, 492
BspT107I GGYRCC 1 cut(s) 1503
BspTI CTTAAG 1 cut(s) 1184
BspTNI GGTCTC 1 cut(s) 996
BsrDI GCAATG 1 cut(s) 1780
BsrFI RCCGGY 1 cut(s) 1426
BsrI ACTGG 4 cut(s) 433, 1123, 1303, 1549
BssAI RCCGGY 1 cut(s) 1426
BssECI CCNNGG 5 cut(s) 668, 789, 910, 978, 1733
BssMI GATC 8 cut(s) 73, 526, 640, 803, 1070, 1193, 1444, 1789
BssNI GRCGYC 1 cut(s) 1504
BssT1I CCWWGG 1 cut(s) 789
Bst2UI CCWGG 3 cut(s) 912, 1136, 1376
Bst4CI ACNGT 6 cut(s) 403, 446, 494, 1037, 1654, 1840
Bst6I CTCTTC 4 cut(s) 19, 203, 492, 1699
BstACI GRCGYC 1 cut(s) 1504
BstAFI CTTAAG 1 cut(s) 1184
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 6 cut(s) 434, 504, 1409, 1640, 1771, 1824
BstDSI CCRYGG 1 cut(s) 1733
BstF5I GGATG 2 cut(s) 1396, 1729
BstH2I RGCGCY 1 cut(s) 1507
BstHHI GCGC 1 cut(s) 1506
BstKTI GATC 8 cut(s) 76, 529, 643, 806, 1073, 1196, 1447, 1792
BstMAI GTCTC 4 cut(s) 274, 996, 1003, 1054
BstMBI GATC 8 cut(s) 73, 526, 640, 803, 1070, 1193, 1444, 1789
BstMWI GCNNNNNNNGC 5 cut(s) 347, 685, 1557, 1632, 1910
BstNI CCWGG 3 cut(s) 912, 1136, 1376
BstNSI RCATGY 2 cut(s) 506, 626
BstSCI CCNGG 4 cut(s) 910, 978, 1134, 1374
BstSFI CTRYAG 2 cut(s) 1785, 1830
BstSLI GKGCMC 2 cut(s) 1122, 1356
BstV1I GCAGC 6 cut(s) 331, 382, 1647, 1771, 1864, 1897
BstV2I GAAGAC 2 cut(s) 75, 738
BstX2I RGATCY 4 cut(s) 803, 1070, 1444, 1789
BstYI RGATCY 4 cut(s) 803, 1070, 1444, 1789
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 5 cut(s) 141, 673, 788, 1319, 1407
BsuTUI ATCGAT 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 1733
BtsCI GGATG 2 cut(s) 1396, 1729
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 4 cut(s) 972, 1042, 1051, 1836
BveI ACCTGC 1 cut(s) 1865
Cac8I GCNNGC 6 cut(s) 434, 504, 1409, 1640, 1771, 1824
CaiI CAGNNNCTG 2 cut(s) 725, 1838
CciI TCATGA 2 cut(s) 694, 1620
CfoI GCGC 1 cut(s) 1506
Cfr10I RCCGGY 1 cut(s) 1426
Cfr13I GGNCC 2 cut(s) 1132, 1318
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 1740
CspAI ACCGGT 1 cut(s) 1426
CviQI GTAC 1 cut(s) 1740
DinI GGCGCC 1 cut(s) 1505
DpnI GATC 8 cut(s) 75, 528, 642, 805, 1072, 1195, 1446, 1791
DpnII GATC 8 cut(s) 73, 526, 640, 803, 1070, 1193, 1444, 1789
DriI GACNNNNNGTC 1 cut(s) 1016
Eam1104I CTCTTC 4 cut(s) 19, 203, 492, 1699
Eam1105I GACNNNNNGTC 1 cut(s) 1016
EarI CTCTTC 4 cut(s) 19, 203, 492, 1699
Ecl136II GAGCTC 2 cut(s) 842, 1626
Eco130I CCWWGG 1 cut(s) 789
Eco24I GRGCYC 3 cut(s) 844, 1098, 1628
Eco31I GGTCTC 1 cut(s) 996
Eco32I GATATC 1 cut(s) 907
Eco47I GGWCC 1 cut(s) 1132
Eco53kI GAGCTC 2 cut(s) 842, 1626
Eco57I CTGAAG 2 cut(s) 260, 735
EcoICRI GAGCTC 2 cut(s) 842, 1626
EcoO109I RGGNCCY 1 cut(s) 1132
EcoRII CCWGG 3 cut(s) 910, 1134, 1374
EcoRV GATATC 1 cut(s) 907
EcoT14I CCWWGG 1 cut(s) 789
EcoT38I GRGCYC 3 cut(s) 844, 1098, 1628
EgeI GGCGCC 1 cut(s) 1505
EheI GGCGCC 1 cut(s) 1505
ErhI CCWWGG 1 cut(s) 789
Esp3I CGTCTC 1 cut(s) 274
FalI AAGNNNNNCTT 2 cut(s) 1864, 1896
FaqI GGGAC 2 cut(s) 169, 1043
FauI CCCGC 1 cut(s) 224
FauNDI CATATG 1 cut(s) 1231
FbaI TGATCA 2 cut(s) 526, 640
FblI GTMKAC 2 cut(s) 111, 159
Fnu4HI GCNGC 6 cut(s) 320, 371, 1636, 1785, 1878, 1911
FokI GGATG 2 cut(s) 1403, 1736
FriOI GRGCYC 3 cut(s) 844, 1098, 1628
Fsp4HI GCNGC 6 cut(s) 320, 371, 1636, 1785, 1878, 1911
FspBI CTAG 3 cut(s) 681, 1080, 1680
GlaI GCGC 1 cut(s) 1505
GluI GCNGC 6 cut(s) 320, 371, 1636, 1785, 1878, 1911
GsaI CCCAGC 2 cut(s) 959, 1324
HaeII RGCGCY 1 cut(s) 1507
HaeIII GGCC 5 cut(s) 141, 673, 788, 1319, 1407
HapII CCGG 3 cut(s) 93, 980, 1427
HgaI GACGC 1 cut(s) 97
HhaI GCGC 1 cut(s) 1506
Hin1I GRCGYC 1 cut(s) 1504
Hin6I GCGC 1 cut(s) 1504
HinP1I GCGC 1 cut(s) 1504
HincII GTYRAC 3 cut(s) 112, 160, 1843
HindII GTYRAC 3 cut(s) 112, 160, 1843
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 6 cut(s) 117, 926, 1226, 1235, 1688, 1753
HpaII CCGG 3 cut(s) 93, 980, 1427
HphI GGTGA 2 cut(s) 82, 1697
Hpy166II GTNNAC 7 cut(s) 90, 112, 160, 764, 1120, 1730, 1843
Hpy188III TCNNGA 5 cut(s) 524, 695, 1262, 1621, 1926
Hpy8I GTNNAC 7 cut(s) 90, 112, 160, 764, 1120, 1730, 1843
Hpy99I CGWCG 3 cut(s) 113, 116, 161
HpyAV CCTTC 7 cut(s) 220, 477, 488, 528, 875, 1260, 1397
HpyCH4III ACNGT 6 cut(s) 403, 446, 494, 1037, 1654, 1840
HpyCH4IV ACGT 3 cut(s) 156, 206, 454
HpyCH4V TGCA 5 cut(s) 79, 825, 1120, 1463, 1787
HpyF10VI GCNNNNNNNGC 5 cut(s) 347, 685, 1557, 1632, 1910
HpySE526I ACGT 3 cut(s) 156, 206, 454
Hsp92I GRCGYC 1 cut(s) 1504
HspAI GCGC 1 cut(s) 1504
KasI GGCGCC 1 cut(s) 1503
Ksp22I TGATCA 2 cut(s) 526, 640
Kzo9I GATC 8 cut(s) 73, 526, 640, 803, 1070, 1193, 1444, 1789
LguI GCTCTTC 2 cut(s) 203, 492
LmnI GCTCC 7 cut(s) 249, 568, 839, 847, 898, 1093, 1493
Lsp1109I GCAGC 6 cut(s) 331, 382, 1647, 1771, 1864, 1897
LweI GCATC 3 cut(s) 625, 1267, 1835
MaeI CTAG 3 cut(s) 681, 1080, 1680
MaeII ACGT 3 cut(s) 156, 206, 454
MaeIII GTNAC 6 cut(s) 61, 488, 1082, 1142, 1306, 1923
MalI GATC 8 cut(s) 75, 528, 642, 805, 1072, 1195, 1446, 1791
MboI GATC 8 cut(s) 73, 526, 640, 803, 1070, 1193, 1444, 1789
MfeI CAATTG 2 cut(s) 1280, 1526
MflI RGATCY 4 cut(s) 803, 1070, 1444, 1789
MhlI GDGCHC 5 cut(s) 844, 1098, 1122, 1356, 1628
Mly113I GGCGCC 1 cut(s) 1504
MlyI GAGTC 1 cut(s) 1220
MmeI TCCRAC 3 cut(s) 79, 475, 988
MseI TTAA 6 cut(s) 315, 747, 834, 1185, 1533, 1886
MslI CAYNNNNRTG 2 cut(s) 486, 820
MspA1I CMGCKG 2 cut(s) 810, 1580
MspCI CTTAAG 1 cut(s) 1184
MspI CCGG 3 cut(s) 93, 980, 1427
MspR9I CCNGG 4 cut(s) 912, 980, 1136, 1376
MunI CAATTG 2 cut(s) 1280, 1526
Mva1269I GAATGC 1 cut(s) 1444
MvaI CCWGG 3 cut(s) 912, 1136, 1376
MwoI GCNNNNNNNGC 5 cut(s) 347, 685, 1557, 1632, 1910
NarI GGCGCC 1 cut(s) 1504
NciI CCSGG 1 cut(s) 980
NdeI CATATG 1 cut(s) 1231
NdeII GATC 8 cut(s) 73, 526, 640, 803, 1070, 1193, 1444, 1789
NlaIV GGNNCC 6 cut(s) 900, 1095, 1179, 1425, 1446, 1505
NmeAIII GCCGAG 1 cut(s) 649
NmuCI GTSAC 5 cut(s) 61, 488, 1082, 1142, 1923
NspI RCATGY 2 cut(s) 506, 626
OliI CACNNNNGTG 1 cut(s) 820
PaeI GCATGC 1 cut(s) 506
PagI TCATGA 2 cut(s) 694, 1620
PciI ACATGT 1 cut(s) 622
PciSI GCTCTTC 2 cut(s) 203, 492
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 280
PctI GAATGC 1 cut(s) 1444
PfeI GAWTC 5 cut(s) 117, 926, 1235, 1688, 1753
PflMI CCANNNNNTGG 2 cut(s) 1331, 1381
PinAI ACCGGT 1 cut(s) 1426
PkrI GCNGC 6 cut(s) 321, 372, 1637, 1786, 1879, 1912
PleI GAGTC 1 cut(s) 1220
PluTI GGCGCC 1 cut(s) 1507
PpsI GAGTC 1 cut(s) 1220
Ppu21I YACGTR 1 cut(s) 207
PpuMI RGGWCCY 1 cut(s) 1132
PscI ACATGT 1 cut(s) 622
PshBI ATTAAT 3 cut(s) 747, 834, 1533
Psp124BI GAGCTC 2 cut(s) 844, 1628
Psp5II RGGWCCY 1 cut(s) 1132
Psp6I CCWGG 3 cut(s) 910, 1134, 1374
PspFI CCCAGC 2 cut(s) 955, 1320
PspGI CCWGG 3 cut(s) 910, 1134, 1374
PspN4I GGNNCC 6 cut(s) 900, 1095, 1179, 1425, 1446, 1505
PspPI GGNCC 2 cut(s) 1132, 1318
PspPPI RGGWCCY 1 cut(s) 1132
PstI CTGCAG 1 cut(s) 1789
PstNI CAGNNNCTG 2 cut(s) 725, 1838
PsuI RGATCY 4 cut(s) 803, 1070, 1444, 1789
PvuII CAGCTG 1 cut(s) 1580
RsaI GTAC 1 cut(s) 1741
RsaNI GTAC 1 cut(s) 1740
RseI CAYNNNNRTG 2 cut(s) 486, 820
SacI GAGCTC 2 cut(s) 844, 1628
SalI GTCGAC 2 cut(s) 110, 158
SapI GCTCTTC 2 cut(s) 203, 492
SaqAI TTAA 6 cut(s) 315, 747, 834, 1185, 1533, 1886
SatI GCNGC 6 cut(s) 320, 371, 1636, 1785, 1878, 1911
Sau3AI GATC 8 cut(s) 73, 526, 640, 803, 1070, 1193, 1444, 1789
Sau96I GGNCC 2 cut(s) 1132, 1318
ScaI AGTACT 1 cut(s) 1741
SchI GAGTC 1 cut(s) 1220
ScrFI CCNGG 4 cut(s) 912, 980, 1136, 1376
SduI GDGCHC 5 cut(s) 844, 1098, 1122, 1356, 1628
SfaNI GCATC 3 cut(s) 625, 1267, 1835
SfcI CTRYAG 2 cut(s) 1785, 1830
SfoI GGCGCC 1 cut(s) 1505
SgrDI CGTCGACG 1 cut(s) 110
SinI GGWCC 1 cut(s) 1132
SmiMI CAYNNNNRTG 2 cut(s) 486, 820
SmlI CTYRAG 2 cut(s) 1184, 1643
SmoI CTYRAG 2 cut(s) 1184, 1643
SphI GCATGC 1 cut(s) 506
SsiI CCGC 4 cut(s) 231, 654, 810, 1442
SspDI GGCGCC 1 cut(s) 1503
SspI AATATT 2 cut(s) 36, 751
SspMI CTAG 3 cut(s) 681, 1080, 1680
SstI GAGCTC 2 cut(s) 844, 1628
StyD4I CCNGG 4 cut(s) 910, 978, 1134, 1374
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 6 cut(s) 403, 446, 494, 1037, 1654, 1840
TaiI ACGT 3 cut(s) 159, 209, 457
TaqI TCGA 3 cut(s) 111, 120, 159
TaqII GACCGA 1 cut(s) 1010
TatI WGTACW 1 cut(s) 1739
TfiI GAWTC 5 cut(s) 117, 926, 1235, 1688, 1753
Tru1I TTAA 6 cut(s) 315, 747, 834, 1185, 1533, 1886
Tru9I TTAA 6 cut(s) 315, 747, 834, 1185, 1533, 1886
TscAI CASTG 4 cut(s) 979, 1042, 1051, 1843
TseFI GTSAC 5 cut(s) 61, 488, 1082, 1142, 1923
TseI GCWGC 6 cut(s) 319, 370, 1635, 1784, 1877, 1910
Tsp45I GTSAC 5 cut(s) 61, 488, 1082, 1142, 1923
TspGWI ACGGA 4 cut(s) 80, 129, 1161, 1750
TspRI CASTG 4 cut(s) 979, 1042, 1051, 1843
Van91I CCANNNNNTGG 2 cut(s) 1331, 1381
Vha464I CTTAAG 1 cut(s) 1184
VneI GTGCAC 1 cut(s) 1118
VpaK11BI GGWCC 1 cut(s) 1132
VspI ATTAAT 3 cut(s) 747, 834, 1533
XceI RCATGY 2 cut(s) 506, 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 1328
XmiI GTMKAC 2 cut(s) 111, 159
XspI CTAG 3 cut(s) 681, 1080, 1680
ZrmI AGTACT 1 cut(s) 1741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.