Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008400

Physical Location & Seq

Genomic Coordinates Reverse (-)

30680577 .. 30681425

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0297400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGTGGATAAGGAAGAAGGGGATGAAGACATGGTCCCTGCTGACATAGACGTCGATCAGGAGATTAAAGATTTAGCTTCGGAAAAAATCATGCTTTATTTTCTCCAGCCTAATAGGGAAGCCGAAGTTGAGGAGGCTGAAATCAACAACGTGGACCTTAACCTGCCCTCGCTAGGTTGGAAGTTGGTTCGTAGAAGGAACCTGGACTACCCTCTGACTAAGGAAGCTGAAGCGAATAGAGCTTACCAAAGGAAAGGAAAAGCAGTTATGGGATTGGGAAGTAATGCTACTCCTAGGAAGGAGGCTTTTGTGAAACCGGGAATTAGCTTCAAGGATGCAACAAAAGGACAAGGCACCATCTTTATCTCTGATGATGGCCAGGACCAGCACAATGGTTCAAAGAAGGGATCCTCCTCTAGTGAGGAGGAAGTGGTTAGCAATTCTAGCTTCGAAAGCTCTGTTTTATCCTATTCTTCTTTTCCTGAGATTGTTAGGCTTTGCAATGATGTGCATGATCGAATTGTTAGGGCTGATGAAATCTATTCCTCGACTCATGCTTTGGATTATTTTTATGCTAACCATAACTCCCCAATTATGCAGTTTGAAAATTTTAGCAATGCTAGGGCCTCGGGTTTTGTTGGGGATGATCAAGACCAGGATATGAATGAGTATGAGATTAAGATGATAAATGGAAGGAGGGCTTTGATGGCTGTTCATGAGAGCTCTGGTAGGAGCTCGGGATCTAAGAAGAGGACCAGGGAAATGGCTCAAGATGATAACATGACTGAAGCTGCTACAGGAAATGCTGAGGAGGACAGCGCCTCATCTCACAAGGCACCACAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

282

Amino Acids

31.41

Weight (kDa)

4.78

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58130
fragaria_vesca	FvH4_4g00130 FvH4_4g00130 FvH4_4g00130 FvH4_4g00130 FvH4_4g00130
malus_domestica	MD04G1000700.v1.1
prunus_persica	Prupe.1G000700_v2.0.a1
pyrus_communis	pycom04g00110
rosa_chinensis	RchiOBHm_Chr4g0384741 RchiOBHm_Chr5g0003141
rosa_laevigata	RLG00000010276
rosa_multiflora	Rmu_sc0000146.1_g000020 Rmu_sc0000146.1_g000021 Rmu_sc0001322.1_g000020
rosa_roxburghii	Rroxscaffold_5G00332800
rosa_rugosa	Rorug03G0297400
rosa_samantha	Rh4AG000800 Rh4BG000700 Rh4CG000600 Rh4DG000700
rosa_wichuraiana	Rw0G022000 Rw4G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AatII	GACGTC	1 cut(s)	54
Acc36I	ACCTGC	1 cut(s)	171
AccB1I	GGYRCC	2 cut(s)	353, 835
AclWI	GGATC	3 cut(s)	402, 415, 748
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	2 cut(s)	249, 807
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	331, 399, 605
AjnI	CCWGG	4 cut(s)	201, 378, 654, 755
AluBI	AGCT	9 cut(s)	77, 227, 242, 327, 447, 456, 723, 735, 791
AluI	AGCT	9 cut(s)	77, 227, 242, 327, 447, 456, 723, 735, 791
Alw21I	GWGCWC	2 cut(s)	725, 737
AlwI	GGATC	3 cut(s)	402, 415, 748
Ama87I	CYCGRG	2 cut(s)	628, 736
AoxI	GGCC	2 cut(s)	376, 624
ApeKI	GCWGC	1 cut(s)	791
ApoI	RAATTY	1 cut(s)	607
ArsI	GACNNNNNNTTYG	2 cut(s)	541, 573
AspA2I	CCTAGG	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	821
AspS9I	GGNCC	5 cut(s)	34, 154, 382, 624, 753
AsuC2I	CCSGG	1 cut(s)	318
AsuII	TTCGAA	1 cut(s)	450
AvaI	CYCGRG	2 cut(s)	628, 736
AvaII	GGWCC	4 cut(s)	34, 154, 382, 753
AvrII	CCTAGG	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	378
BamHI	GGATCC	1 cut(s)	407
BanI	GGYRCC	2 cut(s)	353, 835
BanII	GRGCYC	2 cut(s)	725, 737
BarI	GAAGNNNNNNTAC	2 cut(s)	271, 303
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	2 cut(s)	725, 737
BbvCI	CCTCAGC	1 cut(s)	807
BbvI	GCAGC	1 cut(s)	778
BccI	CCATC	3 cut(s)	365, 368, 700
BciT130I	CCWGG	4 cut(s)	203, 380, 656, 757
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	318
BfaI	CTAG	5 cut(s)	173, 294, 417, 444, 621
BfmI	CTRYAG	1 cut(s)	795
BfoI	RGCGCY	1 cut(s)	822
BfuAI	ACCTGC	1 cut(s)	171
BisI	GCNGC	1 cut(s)	792
BlnI	CCTAGG	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	793
Bme1390I	CCNGG	5 cut(s)	203, 318, 380, 656, 757
Bme18I	GGWCC	4 cut(s)	34, 154, 382, 753
BmeT110I	CYCGRG	2 cut(s)	628, 736
BmgT120I	GGNCC	5 cut(s)	34, 154, 382, 624, 753
BmiI	GGNNCC	5 cut(s)	36, 200, 355, 409, 837
BmrFI	CCNGG	5 cut(s)	203, 318, 380, 656, 757
BmsI	GCATC	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	807
Bpu14I	TTCGAA	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	753
BpuMI	CCSGG	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	293, 627, 756
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse3DI	GCAATG	2 cut(s)	508, 622
BseBI	CCWGG	4 cut(s)	203, 380, 656, 757
BseDI	CCNNGG	3 cut(s)	293, 627, 756
BseGI	GGATG	3 cut(s)	28, 340, 649
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	2 cut(s)	508, 622
BseMII	CTCAG	2 cut(s)	474, 798
BseRI	GAGGAG	4 cut(s)	146, 403, 437, 824
BseXI	GCAGC	1 cut(s)	778
BshFI	GGCC	2 cut(s)	378, 626
BshNI	GGYRCC	2 cut(s)	353, 835
BsiHKAI	GWGCWC	2 cut(s)	725, 737
BsiHKCI	CYCGRG	2 cut(s)	628, 736
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	378, 626
BsoBI	CYCGRG	2 cut(s)	628, 736
Bsp119I	TTCGAA	1 cut(s)	450
Bsp1286I	GDGCHC	2 cut(s)	725, 737
Bsp143I	GATC	5 cut(s)	55, 407, 514, 646, 740
BspANI	GGCC	2 cut(s)	378, 626
BspCNI	CTCAG	2 cut(s)	475, 799
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	5 cut(s)	36, 200, 355, 409, 837
BspMI	ACCTGC	1 cut(s)	171
BspPI	GGATC	3 cut(s)	402, 415, 748
BspT104I	TTCGAA	1 cut(s)	450
BspT107I	GGYRCC	2 cut(s)	353, 835
BsrDI	GCAATG	2 cut(s)	508, 622
BssECI	CCNNGG	3 cut(s)	293, 627, 756
BssMI	GATC	5 cut(s)	55, 407, 514, 646, 740
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	4 cut(s)	203, 380, 656, 757
Bst6I	CTCTTC	1 cut(s)	743
BstACI	GRCGYC	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	450
BstDEI	CTNAG	4 cut(s)	219, 483, 744, 807
BstF5I	GGATG	3 cut(s)	28, 340, 649
BstH2I	RGCGCY	1 cut(s)	822
BstHHI	GCGC	1 cut(s)	821
BstKTI	GATC	5 cut(s)	58, 410, 517, 649, 743
BstMBI	GATC	5 cut(s)	55, 407, 514, 646, 740
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 444, 453, 707
BstNI	CCWGG	4 cut(s)	203, 380, 656, 757
BstSCI	CCNGG	5 cut(s)	201, 316, 378, 654, 755
BstSFI	CTRYAG	1 cut(s)	795
BstV1I	GCAGC	1 cut(s)	778
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	2 cut(s)	407, 740
BstXI	CCANNNNNNTGG	2 cut(s)	392, 763
BstYI	RGATCY	2 cut(s)	407, 740
BsuRI	GGCC	2 cut(s)	378, 626
BtsCI	GGATG	3 cut(s)	28, 340, 649
BveI	ACCTGC	1 cut(s)	171
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	1 cut(s)	821
Cfr13I	GGNCC	5 cut(s)	34, 154, 382, 624, 753
CviAII	CATG	7 cut(s)	31, 91, 512, 554, 716, 781, 846
DdeI	CTNAG	4 cut(s)	219, 483, 744, 807
DpnI	GATC	5 cut(s)	57, 409, 516, 648, 742
DpnII	GATC	5 cut(s)	55, 407, 514, 646, 740
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	743
EarI	CTCTTC	1 cut(s)	743
Ecl136II	GAGCTC	2 cut(s)	723, 735
Eco130I	CCWWGG	1 cut(s)	293
Eco24I	GRGCYC	2 cut(s)	725, 737
Eco47I	GGWCC	4 cut(s)	34, 154, 382, 753
Eco53kI	GAGCTC	2 cut(s)	723, 735
Eco57I	CTGAAG	2 cut(s)	249, 807
Eco88I	CYCGRG	2 cut(s)	628, 736
EcoICRI	GAGCTC	2 cut(s)	723, 735
EcoO109I	RGGNCCY	1 cut(s)	624
EcoRII	CCWGG	4 cut(s)	201, 378, 654, 755
EcoT14I	CCWWGG	1 cut(s)	293
EcoT38I	GRGCYC	2 cut(s)	725, 737
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	7 cut(s)	34, 94, 515, 557, 719, 784, 849
FalI	AAGNNNNNCTT	2 cut(s)	685, 717
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	7 cut(s)	30, 90, 511, 553, 715, 780, 845
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	1 cut(s)	792
FokI	GGATG	3 cut(s)	35, 347, 656
FriOI	GRGCYC	2 cut(s)	725, 737
Fsp4HI	GCNGC	1 cut(s)	792
FspBI	CTAG	5 cut(s)	173, 294, 417, 444, 621
GlaI	GCGC	1 cut(s)	820
GluI	GCNGC	1 cut(s)	792
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	822
HaeIII	GGCC	2 cut(s)	378, 626
HapII	CCGG	1 cut(s)	317
HhaI	GCGC	1 cut(s)	821
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	7 cut(s)	34, 94, 515, 557, 719, 784, 849
Hin6I	GCGC	1 cut(s)	819
HinP1I	GCGC	1 cut(s)	819
HinfI	GANTC	1 cut(s)	550
HpaII	CCGG	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	82, 216, 370
Hpy188III	TCNNGA	6 cut(s)	59, 482, 650, 716, 738, 770
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	5 cut(s)	11, 189, 292, 397, 687
HpyCH4IV	ACGT	2 cut(s)	51, 150
HpyCH4V	TGCA	4 cut(s)	338, 501, 511, 598
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 444, 453, 707
HpyF3I	CTNAG	4 cut(s)	219, 483, 744, 807
HpySE526I	ACGT	2 cut(s)	51, 150
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	7 cut(s)	34, 94, 515, 557, 719, 784, 849
HspAI	GCGC	1 cut(s)	819
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	5 cut(s)	55, 407, 514, 646, 740
LmnI	GCTCC	1 cut(s)	732
Lsp1109I	GCAGC	1 cut(s)	778
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	5 cut(s)	173, 294, 417, 444, 621
MaeII	ACGT	2 cut(s)	51, 150
MalI	GATC	5 cut(s)	57, 409, 516, 648, 742
MboI	GATC	5 cut(s)	55, 407, 514, 646, 740
MboII	GAAGA	4 cut(s)	26, 38, 465, 760
MflI	RGATCY	2 cut(s)	407, 740
MhlI	GDGCHC	2 cut(s)	725, 737
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	5 cut(s)	321, 439, 519, 591, 607
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	544
MmeI	TCCRAC	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	3 cut(s)	66, 159, 678
MslI	CAYNNNNRTG	1 cut(s)	844
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	5 cut(s)	203, 318, 380, 656, 757
MvaI	CCWGG	4 cut(s)	203, 380, 656, 757
MwoI	GCNNNNNNNGC	4 cut(s)	239, 444, 453, 707
NciI	CCSGG	1 cut(s)	318
NdeII	GATC	5 cut(s)	55, 407, 514, 646, 740
NlaIII	CATG	7 cut(s)	34, 94, 515, 557, 719, 784, 849
NlaIV	GGNNCC	5 cut(s)	36, 200, 355, 409, 837
NspV	TTCGAA	1 cut(s)	450
PagI	TCATGA	1 cut(s)	715
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	793
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
Psp124BI	GAGCTC	2 cut(s)	725, 737
Psp6I	CCWGG	4 cut(s)	201, 378, 654, 755
PspGI	CCWGG	4 cut(s)	201, 378, 654, 755
PspN4I	GGNNCC	5 cut(s)	36, 200, 355, 409, 837
PspPI	GGNCC	5 cut(s)	34, 154, 382, 624, 753
PsrI	GAACNNNNNNTAC	2 cut(s)	191, 223
PsuI	RGATCY	2 cut(s)	407, 740
PsyI	GACNNNGTC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	844
SacI	GAGCTC	2 cut(s)	725, 737
SaqAI	TTAA	3 cut(s)	66, 159, 678
SatI	GCNGC	1 cut(s)	792
Sau3AI	GATC	5 cut(s)	55, 407, 514, 646, 740
Sau96I	GGNCC	5 cut(s)	34, 154, 382, 624, 753
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	5 cut(s)	203, 318, 380, 656, 757
SduI	GDGCHC	2 cut(s)	725, 737
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	795
SfuI	TTCGAA	1 cut(s)	450
SinI	GGWCC	4 cut(s)	34, 154, 382, 753
SmiMI	CAYNNNNRTG	1 cut(s)	844
SmlI	CTYRAG	1 cut(s)	768
SmoI	CTYRAG	1 cut(s)	768
Sse9I	AATT	5 cut(s)	321, 439, 519, 591, 607
SspMI	CTAG	5 cut(s)	173, 294, 417, 444, 621
SstI	GAGCTC	2 cut(s)	725, 737
StyD4I	CCNGG	5 cut(s)	201, 316, 378, 654, 755
StyI	CCWWGG	1 cut(s)	293
TaiI	ACGT	2 cut(s)	54, 153
TaqI	TCGA	4 cut(s)	54, 450, 517, 548
TasI	AATT	5 cut(s)	321, 439, 519, 591, 607
Tru1I	TTAA	3 cut(s)	66, 159, 678
Tru9I	TTAA	3 cut(s)	66, 159, 678
TseI	GCWGC	1 cut(s)	791
TspDTI	ATGAA	4 cut(s)	39, 549, 677, 704
Tth111I	GACNNNGTC	1 cut(s)	32
VpaK11BI	GGWCC	4 cut(s)	34, 154, 382, 753
XapI	RAATTY	1 cut(s)	607
XmaJI	CCTAGG	1 cut(s)	293
XspI	CTAG	5 cut(s)	173, 294, 417, 444, 621
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.