Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000146.1

Orthogroup ID

OG0008400

Physical Location & Seq

Genomic Coordinates Forward (+)

64330 .. 64905

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000146.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atggaaacttggaaggccagctctgtgagatggaaccggtggaggagaatgcggatcatcaacctcaaaatgcactatcaaactcaactaagtcaggtagaggagcttcatggcgccagaaatcgtcctagacgacaatactggaagctcgaaactttcagcataacacaagttctaccagctggtatctctttcaagcaacaagggttccaaaagcccagaggtgtagatgtcatgagctcttttggcagcaagctcaaggaaacagtaaagcaagataagaataaacttactagaggtgaatcctcttctttggggataattggaaaggagggggatggtttaccacggagtactcctaaagagaatcaacagattattgctggcaatgacaatgctccagatctggggaaaatatgtgatttgacaccaaagcaagcatctacaggcactgttgacaaaggtaaaacctgcttatttgtgagaagtgctgcttcattaaatgaatgggcaaaagctaaggctgccctgagtgggtcacgaaaaagaaagaacagcaacaagtacatgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

191

Amino Acids

21.6

Weight (kDa)

10.36

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58130
fragaria_vesca	FvH4_4g00130 FvH4_4g00130 FvH4_4g00130 FvH4_4g00130 FvH4_4g00130
malus_domestica	MD04G1000700.v1.1
prunus_persica	Prupe.1G000700_v2.0.a1
pyrus_communis	pycom04g00110
rosa_chinensis	RchiOBHm_Chr4g0384741 RchiOBHm_Chr5g0003141
rosa_laevigata	RLG00000010276
rosa_multiflora	Rmu_sc0000146.1_g000020 Rmu_sc0000146.1_g000021 Rmu_sc0001322.1_g000020
rosa_roxburghii	Rroxscaffold_5G00332800
rosa_rugosa	Rorug03G0297400
rosa_samantha	Rh4AG000800 Rh4BG000700 Rh4CG000600 Rh4DG000700
rosa_wichuraiana	Rw0G022000 Rw4G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	113
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	62
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	2 cut(s)	355, 566
AfiI	CCNNNNNNNGG	2 cut(s)	407, 534
AflIII	ACRYGT	1 cut(s)	567
AgeI	ACCGGT	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	7 cut(s)	21, 106, 148, 182, 240, 256, 518
AluI	AGCT	7 cut(s)	21, 106, 148, 182, 240, 256, 518
Alw21I	GWGCWC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	62
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	3 cut(s)	249, 491, 524
AsiGI	ACCGGT	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	242
BarI	GAAGNNNNNNTAC	2 cut(s)	90, 122
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	261, 478, 511
BccI	CCATC	2 cut(s)	24, 332
BfaI	CTAG	2 cut(s)	129, 294
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	479
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	3 cut(s)	250, 492, 525
BlsI	GCNGC	3 cut(s)	251, 493, 526
BmcAI	AGTACT	1 cut(s)	355
BmiI	GGNNCC	3 cut(s)	35, 115, 209
BmsI	GCATC	1 cut(s)	449
BpmI	CTGGAG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 534
Bse118I	RCCGGY	1 cut(s)	36
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	407, 534
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	58, 116
BseXI	GCAGC	3 cut(s)	261, 478, 511
BshFI	GGCC	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	113
BshTI	ACCGGT	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	407, 534
BsmI	GAATGC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	54, 403
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	522
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	35, 115, 209
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	2 cut(s)	54, 403
BssNI	GRCGYC	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	268, 454
Bst6I	CTCTTC	1 cut(s)	313
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	4 cut(s)	19, 254, 385, 438
BstDEI	CTNAG	3 cut(s)	89, 519, 530
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	2 cut(s)	57, 406
BstMBI	GATC	2 cut(s)	54, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 524
BstNSI	RCATGY	1 cut(s)	571
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	3 cut(s)	261, 478, 511
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	4 cut(s)	19, 254, 385, 438
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	354, 565
CspAI	ACCGGT	1 cut(s)	36
CviAII	CATG	3 cut(s)	110, 235, 568
CviQI	GTAC	2 cut(s)	354, 565
DdeI	CTNAG	3 cut(s)	89, 519, 530
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	2 cut(s)	56, 405
DpnII	GATC	2 cut(s)	54, 403
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Ecl136II	GAGCTC	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	242
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
FaeI	CATG	3 cut(s)	113, 238, 571
FaiI	YATR	5 cut(s)	111, 164, 236, 418, 569
FalI	AAGNNNNNCTT	2 cut(s)	478, 510
FatI	CATG	3 cut(s)	109, 234, 567
Fnu4HI	GCNGC	3 cut(s)	250, 492, 525
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	250, 492, 525
FspBI	CTAG	2 cut(s)	129, 294
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	3 cut(s)	250, 492, 525
GsuI	CTGGAG	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	37
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	113, 238, 571
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	2 cut(s)	302, 367
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	344, 457
Hpy188III	TCNNGA	3 cut(s)	235, 401, 540
Hpy8I	GTNNAC	2 cut(s)	344, 457
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	2 cut(s)	268, 454
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 524
HpyF3I	CTNAG	3 cut(s)	89, 519, 530
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	113, 238, 571
HspAI	GCGC	1 cut(s)	114
KasI	GGCGCC	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	54, 403
LmnI	GCTCC	2 cut(s)	103, 403
Lsp1109I	GCAGC	3 cut(s)	261, 478, 511
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	2 cut(s)	129, 294
MaeIII	GTNAC	1 cut(s)	537
MalI	GATC	2 cut(s)	56, 405
MboI	GATC	2 cut(s)	54, 403
MboII	GAAGA	1 cut(s)	300
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	1 cut(s)	321
Mly113I	GGCGCC	1 cut(s)	114
MnlI	CCTC	7 cut(s)	36, 74, 94, 215, 290, 316, 325
MseI	TTAA	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	1 cut(s)	37
Mva1269I	GAATGC	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	246, 524
NarI	GGCGCC	1 cut(s)	114
NdeII	GATC	2 cut(s)	54, 403
NlaIII	CATG	3 cut(s)	113, 238, 571
NlaIV	GGNNCC	3 cut(s)	35, 115, 209
NmuCI	GTSAC	1 cut(s)	537
NspI	RCATGY	1 cut(s)	571
PagI	TCATGA	1 cut(s)	234
PciI	ACATGT	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	302, 367
PinAI	ACCGGT	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	251, 493, 526
PluTI	GGCGCC	1 cut(s)	117
PscI	ACATGT	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	242
PspN4I	GGNNCC	3 cut(s)	35, 115, 209
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	355, 566
RsaNI	GTAC	2 cut(s)	354, 565
SacI	GAGCTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	500
SatI	GCNGC	3 cut(s)	250, 492, 525
Sau3AI	GATC	2 cut(s)	54, 403
ScaI	AGTACT	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	242
SfaNI	GCATC	1 cut(s)	449
SfcI	CTRYAG	1 cut(s)	444
SfoI	GGCGCC	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	1 cut(s)	52
SspDI	GGCGCC	1 cut(s)	113
SspMI	CTAG	2 cut(s)	129, 294
SstI	GAGCTC	1 cut(s)	242
TaaI	ACNGT	2 cut(s)	268, 454
TaqI	TCGA	1 cut(s)	150
TasI	AATT	1 cut(s)	321
TatI	WGTACW	2 cut(s)	353, 564
TfiI	GAWTC	2 cut(s)	302, 367
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	537
TseI	GCWGC	3 cut(s)	249, 491, 524
Tsp45I	GTSAC	1 cut(s)	537
TspDTI	ATGAA	3 cut(s)	98, 486, 519
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	457
XceI	RCATGY	1 cut(s)	571
XspI	CTAG	2 cut(s)	129, 294
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.