MD04G1080400.v1.1

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
11049357 .. 11054327
4971 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1080400.v1.1.491

Sequence Viewer

Length: 1905 bp
ATGAAGTTTCACTTAGCTCAAATTAAAAACAAAGATATAGTCCCCTGCACAGAAGTTCCGACTGATGTGCGAGATAACATTTTAAGCATAATAAGCACTCCCAAGAAACAGAAAACTCCCAAGAAACCAAGGGTTGATAAGGCACTTGCAGCCAATGGTCAACAGAATAGCTCCTCTGCTAGTGGTGGCTTCCATCCTAACGATGGGACTAGCGGACAGAACGGAAGCACATCCCCGTCTTTGTTGTTTCCCTGCCCTTCACCAGCGGCACACCTAGAAGTGGGTGATGCTCAAAAGCAAAAGAAGGATGTTGCTGATAAAAAAATTGCTGTTTTTTTCTTCCACAATTCTGTCCCTTTTAGTGCTGCTAAATCCATATATTATCAGGAAATGGTGGATGCTGTAGCAGAGTGTGGGGTGGACTACAAAGCCCCAAGCTACGAAAGCCTACGATCTTCTCTTCTGGAAAAAGTCAAAGGTGATATACATGATTGCTGCAAGAAATACAGAGATGAATGGAAAGAAACAGGGTGCACTATATTATGTGATAGCTGGTCTGATGGTAGGAACAAATCACTTGTAATATTCTCGGTTACATATCCGAAGGGAACTCTGTTTCTGAAGTCAGTTGATGTATCGGGTCATGAAGACGATGCTACTTACTTGTTTGAGCTAATTGAGTCTGTTGTCTTGGAGGTTGGTGTTGAGAATGTTGTGCAAGTTATAACGAATACTACTGCCAGTTATGTTTACGCAGGAAGACTTCTTATGGCCAAGTACAACTCATTGTTTTGGTCTCCTTGTGCGTCTTATTGTATTAATAAGATGCTGGAGGATATCGGTAAACAGGAGTGGGTGGCTACAGTTCTGGAAGAGGCAAAGACCATCGCTAGGTTCATATACAGTCATCCATGGACTTTGAGTACGATGAGAAAATTCACTGGTGGAATGGAATTGCTAAGGCCAAAAATTACTAGATTCGTGACTAATTTCCTCACCTTGAGGTCCATTGTGATTCAGGAGGACAATCTAAAGCACATGTTTTCCTTGTCTTCAGTATATAGTAGACACCCCGAGGCTCAAGCTATTAAGTCGTTGTTGTATTTAGAGAGATTTTGGAAGCATGCACGAGAAGCTGTGAGTATTTCTGAACCGCTACTTAAAATCCTTAGGGTTGTTGACGGGGATATGCCAGCTATGGGGTACATGTTTGAAGGAATAGAGAGGGCAAAAGTTGCAATAAGGACCCATTATAAGGGTATCGAAGAGAAATATATGCTGATCTGGGATATAATTGATCAGAGATGGAATATGCAGCTTCACTCGTCCTTGCATGCAGCGGCAGCCTCCCTTAACCCTTCGGTATTCTACAGTCCAAACTTTAAGATTGATTTAAGGATGAGAAATGGGTTTCAAGAAACTATGTTGAGGATGGCTACCACACATGACGATAGAATGGAAGTAACAAAAGAACATCCTATGTATGTTAATGCACAAGGTGCTTTTGGGACGGATTTTGCAATCATGGGAAGGACACTGAATTCCCCAGGAGATTGGTGGGCAGGTTATGGTTATGAAATTCCCACAATCCAGAGATGTGCGATACGGATACTGAGCCAACCATGTAGCTCCCATTGGTGCTGTTGGAACTGGACCACCTTCGAGAGCATGCACAGCAAGAAACGCAACCGACGAGAGCTGGAAATTTTCAATGATCTGGTTTTCGTACACTGCAACCTTTGGTTGCAGTCTATTTATCACCACAGAGATGAGAAATGCAAACCCATTGTGTTTGATGAAGTAGATGTAAGTTCTCAATGGCCTACTGAGTTGGATTCTTCTGCCCCACTTTTGGATGATTCATGGCTCGACAACTTACCCCTTGAATGTAGAGGTAGTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

635

Amino Acids

72.2

Weight (kDa)

6.85

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 145 - 296 3.6e-59 Domain of unknown function (DUF659)
Dimer_Tnp_hAT PF05699 515 - 579 1.5e-07 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 725, 1254
Acc36I ACCTGC 1 cut(s) 1553
AccI GTMKAC 1 cut(s) 1066
AciI CCGC 4 cut(s) 213, 266, 1154, 1340
AcoI YGGCCR 1 cut(s) 771
AcsI RAATTY 4 cut(s) 935, 1540, 1578, 1704
AcuI CTGAAG 2 cut(s) 641, 1038
AdeI CACNNNGTG 1 cut(s) 1499
AfaI GTAC 4 cut(s) 779, 925, 1205, 1728
AfiI CCNNNNNNNGG 6 cut(s) 203, 280, 891, 1199, 1255, 1852
AflIII ACRYGT 2 cut(s) 1038, 1206
AgsI TTSAA 4 cut(s) 1214, 1415, 1711, 1886
AjnI CCWGG 1 cut(s) 1546
Alw21I GWGCWC 1 cut(s) 536
Alw26I GTCTC 1 cut(s) 801
Alw44I GTGCAC 1 cut(s) 532
Ama87I CYCGRG 1 cut(s) 1073
AoxI GGCC 3 cut(s) 771, 962, 1820
ApaLI GTGCAC 1 cut(s) 532
ApeKI GCWGC 6 cut(s) 149, 365, 495, 1315, 1337, 1343
ApoI RAATTY 4 cut(s) 935, 1540, 1578, 1704
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
AseI ATTAAT 1 cut(s) 819
AspS9I GGNCC 3 cut(s) 1005, 1245, 1653
AsuHPI GGTGA 5 cut(s) 252, 296, 491, 988, 1751
AvaI CYCGRG 1 cut(s) 1073
AvaII GGWCC 3 cut(s) 1005, 1245, 1653
AxyI CCTNAGG 1 cut(s) 1169
BaeGI GKGCMC 1 cut(s) 536
BalI TGGCCA 1 cut(s) 773
BauI CACGAG 1 cut(s) 1128
BbsI GAAGAC 3 cut(s) 654, 766, 1044
Bbv12I GWGCWC 1 cut(s) 536
BbvI GCAGC 6 cut(s) 161, 352, 482, 1327, 1349, 1355
BccI CCATC 6 cut(s) 197, 201, 554, 893, 1299, 1426
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 1 cut(s) 1548
BciVI GTATCC 1 cut(s) 1602
BclI TGATCA 1 cut(s) 1297
BcoDI GTCTC 1 cut(s) 801
BfaI CTAG 5 cut(s) 180, 210, 275, 891, 975
BfmI CTRYAG 3 cut(s) 402, 861, 1369
BfuAI ACCTGC 1 cut(s) 1553
BfuI GTATCC 1 cut(s) 1602
BisI GCNGC 8 cut(s) 150, 267, 366, 496, 1316, 1338, 1341, 1344
BlsI GCNGC 8 cut(s) 151, 268, 367, 497, 1317, 1339, 1342, 1345
Bme1390I CCNGG 1 cut(s) 1548
Bme18I GGWCC 3 cut(s) 1005, 1245, 1653
BmeT110I CYCGRG 1 cut(s) 1073
BmgT120I GGNCC 3 cut(s) 1005, 1245, 1653
BmiI GGNNCC 1 cut(s) 1247
BmrFI CCNGG 1 cut(s) 1548
BmsI GCATC 4 cut(s) 277, 388, 643, 816
BpiI GAAGAC 3 cut(s) 654, 766, 1044
BpmI CTGGAG 1 cut(s) 851
Bpu10I CCTNAGC 1 cut(s) 959
BpuEI CTTGAG 2 cut(s) 1021, 1065
BsaI GGTCTC 1 cut(s) 801
BsaJI CCNNGG 4 cut(s) 128, 911, 1074, 1546
Bsc4I CCNNNNNNNGG 6 cut(s) 203, 280, 891, 1199, 1255, 1852
Bse1I ACTGG 3 cut(s) 741, 946, 1655
Bse21I CCTNAGG 1 cut(s) 1169
BseBI CCWGG 1 cut(s) 1548
BseDI CCNNGG 4 cut(s) 128, 911, 1074, 1546
BseGI GGATG 9 cut(s) 193, 230, 313, 403, 907, 1404, 1437, 1474, 1861
BseLI CCNNNNNNNGG 6 cut(s) 203, 280, 891, 1199, 1255, 1852
BseMII CTCAG 2 cut(s) 1604, 1818
BseNI ACTGG 3 cut(s) 741, 946, 1655
BseRI GAGGAG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 536
BseXI GCAGC 6 cut(s) 161, 352, 482, 1327, 1349, 1355
BsgI GTGCAG 1 cut(s) 31
BshFI GGCC 3 cut(s) 773, 964, 1822
BsiHKAI GWGCWC 1 cut(s) 536
BsiHKCI CYCGRG 1 cut(s) 1073
BslFI GGGAC 5 cut(s) 26, 220, 338, 1522, 1884
BslI CCNNNNNNNGG 6 cut(s) 203, 280, 891, 1199, 1255, 1852
BsmAI GTCTC 1 cut(s) 801
BsmFI GGGAC 5 cut(s) 26, 220, 338, 1522, 1884
BsnI GGCC 3 cut(s) 773, 964, 1822
Bso31I GGTCTC 1 cut(s) 801
BsoBI CYCGRG 1 cut(s) 1073
Bsp1286I GDGCHC 1 cut(s) 536
Bsp143I GATC 4 cut(s) 452, 1281, 1297, 1714
Bsp19I CCATGG 1 cut(s) 911
BspACI CCGC 4 cut(s) 213, 266, 1154, 1340
BspANI GGCC 3 cut(s) 773, 964, 1822
BspCNI CTCAG 2 cut(s) 1605, 1819
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 1 cut(s) 1247
BspMI ACCTGC 1 cut(s) 1553
BspTNI GGTCTC 1 cut(s) 801
BsrI ACTGG 3 cut(s) 741, 946, 1655
BssECI CCNNGG 4 cut(s) 128, 911, 1074, 1546
BssMI GATC 4 cut(s) 452, 1281, 1297, 1714
BssSI CACGAG 1 cut(s) 1128
BssT1I CCWWGG 2 cut(s) 128, 911
Bst2BI CACGAG 1 cut(s) 1128
Bst2UI CCWGG 1 cut(s) 1548
Bst4CI ACNGT 3 cut(s) 865, 905, 1373
Bst6I CTCTTC 3 cut(s) 465, 867, 1260
BstAPI GCANNNNNTGC 2 cut(s) 1235, 1499
BstC8I GCNNGC 4 cut(s) 1125, 1194, 1335, 1670
BstDEI CTNAG 5 cut(s) 13, 959, 1169, 1613, 1827
BstDSI CCRYGG 1 cut(s) 911
BstF5I GGATG 9 cut(s) 193, 230, 313, 403, 907, 1404, 1437, 1474, 1861
BstKTI GATC 4 cut(s) 455, 1284, 1300, 1717
BstMAI GTCTC 1 cut(s) 801
BstMBI GATC 4 cut(s) 452, 1281, 1297, 1714
BstMWI GCNNNNNNNGC 9 cut(s) 93, 149, 444, 1133, 1235, 1343, 1499, 1674, 1683
BstNI CCWGG 1 cut(s) 1548
BstNSI RCATGY 5 cut(s) 1042, 1127, 1210, 1337, 1672
BstSCI CCNGG 1 cut(s) 1546
BstSFI CTRYAG 3 cut(s) 402, 861, 1369
BstSLI GKGCMC 1 cut(s) 536
BstV1I GCAGC 6 cut(s) 161, 352, 482, 1327, 1349, 1355
BstV2I GAAGAC 3 cut(s) 654, 766, 1044
BstXI CCANNNNNNTGG 1 cut(s) 1554
Bsu36I CCTNAGG 1 cut(s) 1169
BsuI GTATCC 1 cut(s) 1602
BsuRI GGCC 3 cut(s) 773, 964, 1822
BtgI CCRYGG 1 cut(s) 911
BtgZI GCGATG 1 cut(s) 871
BtsCI GGATG 9 cut(s) 193, 230, 313, 403, 907, 1404, 1437, 1474, 1861
BtsI GCAGTG 1 cut(s) 1729
BtsIMutI CAGTG 3 cut(s) 939, 1535, 1729
BveI ACCTGC 1 cut(s) 1553
Cac8I GCNNGC 4 cut(s) 1125, 1194, 1335, 1670
CciI TCATGA 1 cut(s) 643
Cfr13I GGNCC 3 cut(s) 1005, 1245, 1653
CseI GACGC 1 cut(s) 795
Csp6I GTAC 4 cut(s) 778, 924, 1204, 1727
CviQI GTAC 4 cut(s) 778, 924, 1204, 1727
DdeI CTNAG 5 cut(s) 13, 959, 1169, 1613, 1827
DpnI GATC 4 cut(s) 454, 1283, 1299, 1716
DpnII GATC 4 cut(s) 452, 1281, 1297, 1714
DraIII CACNNNGTG 1 cut(s) 1499
EaeI YGGCCR 1 cut(s) 771
Eam1104I CTCTTC 3 cut(s) 465, 867, 1260
EarI CTCTTC 3 cut(s) 465, 867, 1260
Eco130I CCWWGG 2 cut(s) 128, 911
Eco31I GGTCTC 1 cut(s) 801
Eco32I GATATC 1 cut(s) 838
Eco47I GGWCC 3 cut(s) 1005, 1245, 1653
Eco57I CTGAAG 2 cut(s) 641, 1038
Eco81I CCTNAGG 1 cut(s) 1169
Eco88I CYCGRG 1 cut(s) 1073
EcoO109I RGGNCCY 1 cut(s) 1245
EcoRI GAATTC 1 cut(s) 1540
EcoRII CCWGG 1 cut(s) 1546
EcoRV GATATC 1 cut(s) 838
EcoT14I CCWWGG 2 cut(s) 128, 911
ErhI CCWWGG 2 cut(s) 128, 911
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 5 cut(s) 26, 220, 338, 1522, 1884
FbaI TGATCA 1 cut(s) 1297
FblI GTMKAC 1 cut(s) 1066
Fnu4HI GCNGC 8 cut(s) 150, 267, 366, 496, 1316, 1338, 1341, 1344
FokI GGATG 9 cut(s) 180, 217, 320, 410, 894, 1411, 1444, 1461, 1868
Fsp4HI GCNGC 8 cut(s) 150, 267, 366, 496, 1316, 1338, 1341, 1344
FspBI CTAG 5 cut(s) 180, 210, 275, 891, 975
GluI GCNGC 8 cut(s) 150, 267, 366, 496, 1316, 1338, 1341, 1344
GsuI CTGGAG 1 cut(s) 851
HaeIII GGCC 3 cut(s) 773, 964, 1822
HgaI GACGC 1 cut(s) 795
HincII GTYRAC 2 cut(s) 161, 1180
HindII GTYRAC 2 cut(s) 161, 1180
HinfI GANTC 5 cut(s) 680, 978, 1015, 1835, 1859
HphI GGTGA 5 cut(s) 252, 296, 491, 988, 1751
Hpy166II GTNNAC 8 cut(s) 161, 421, 534, 751, 845, 1067, 1180, 1729
Hpy188I TCNGA 6 cut(s) 60, 559, 603, 621, 1150, 1302
Hpy188III TCNNGA 9 cut(s) 386, 464, 644, 869, 982, 1019, 1415, 1591, 1663
Hpy8I GTNNAC 8 cut(s) 161, 421, 534, 751, 845, 1067, 1180, 1729
Hpy99I CGWCG 1 cut(s) 1695
HpyAV CCTTC 7 cut(s) 267, 298, 598, 1208, 1368, 1524, 1669
HpyCH4III ACNGT 3 cut(s) 865, 905, 1373
HpyF10VI GCNNNNNNNGC 9 cut(s) 93, 149, 444, 1133, 1235, 1343, 1499, 1674, 1683
HpyF3I CTNAG 5 cut(s) 13, 959, 1169, 1613, 1827
Ksp22I TGATCA 1 cut(s) 1297
Kzo9I GATC 4 cut(s) 452, 1281, 1297, 1714
LmnI GCTCC 2 cut(s) 176, 1634
Lsp1109I GCAGC 6 cut(s) 161, 352, 482, 1327, 1349, 1355
LweI GCATC 4 cut(s) 277, 388, 643, 816
MaeI CTAG 5 cut(s) 180, 210, 275, 891, 975
MaeIII GTNAC 3 cut(s) 592, 982, 1462
MalI GATC 4 cut(s) 454, 1283, 1299, 1716
MboI GATC 4 cut(s) 452, 1281, 1297, 1714
MboII GAAGA 9 cut(s) 331, 447, 452, 659, 771, 884, 1044, 1277, 1830
MhlI GDGCHC 1 cut(s) 536
MlsI TGGCCA 1 cut(s) 773
MluNI TGGCCA 1 cut(s) 773
MlyI GAGTC 1 cut(s) 689
MmeI TCCRAC 3 cut(s) 83, 1625, 1812
Mox20I TGGCCA 1 cut(s) 773
MscI TGGCCA 1 cut(s) 773
MseI TTAA 9 cut(s) 24, 83, 819, 1089, 1161, 1353, 1383, 1394, 1488
MslI CAYNNNNRTG 1 cut(s) 1767
Msp20I TGGCCA 1 cut(s) 773
MspA1I CMGCKG 2 cut(s) 266, 1340
MspR9I CCNGG 1 cut(s) 1548
MvaI CCWGG 1 cut(s) 1548
MwoI GCNNNNNNNGC 9 cut(s) 93, 149, 444, 1133, 1235, 1343, 1499, 1674, 1683
NcoI CCATGG 1 cut(s) 911
NdeII GATC 4 cut(s) 452, 1281, 1297, 1714
NlaIV GGNNCC 1 cut(s) 1247
NmuCI GTSAC 1 cut(s) 982
NspI RCATGY 5 cut(s) 1042, 1127, 1210, 1337, 1672
PaeI GCATGC 3 cut(s) 1127, 1337, 1672
PagI TCATGA 1 cut(s) 643
PciI ACATGT 2 cut(s) 1038, 1206
PcsI WCGNNNNNNNCGW 1 cut(s) 1690
PfeI GAWTC 4 cut(s) 978, 1015, 1835, 1859
PkrI GCNGC 8 cut(s) 151, 268, 367, 497, 1317, 1339, 1342, 1345
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
PpuMI RGGWCCY 1 cut(s) 1245
PscI ACATGT 2 cut(s) 1038, 1206
PshBI ATTAAT 1 cut(s) 819
PsiI TTATAA 2 cut(s) 725, 1254
Psp5II RGGWCCY 1 cut(s) 1245
Psp6I CCWGG 1 cut(s) 1546
PspGI CCWGG 1 cut(s) 1546
PspN4I GGNNCC 1 cut(s) 1247
PspPI GGNCC 3 cut(s) 1005, 1245, 1653
PspPPI RGGWCCY 1 cut(s) 1245
RsaI GTAC 4 cut(s) 779, 925, 1205, 1728
RsaNI GTAC 4 cut(s) 778, 924, 1204, 1727
RseI CAYNNNNRTG 1 cut(s) 1767
SaqAI TTAA 9 cut(s) 24, 83, 819, 1089, 1161, 1353, 1383, 1394, 1488
SatI GCNGC 8 cut(s) 150, 267, 366, 496, 1316, 1338, 1341, 1344
Sau3AI GATC 4 cut(s) 452, 1281, 1297, 1714
Sau96I GGNCC 3 cut(s) 1005, 1245, 1653
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 1 cut(s) 1548
SduI GDGCHC 1 cut(s) 536
SfaNI GCATC 4 cut(s) 277, 388, 643, 816
SfcI CTRYAG 3 cut(s) 402, 861, 1369
SinI GGWCC 3 cut(s) 1005, 1245, 1653
SmiMI CAYNNNNRTG 1 cut(s) 1767
SmlI CTYRAG 2 cut(s) 1000, 1080
SmoI CTYRAG 2 cut(s) 1000, 1080
SphI GCATGC 3 cut(s) 1127, 1337, 1672
SsiI CCGC 4 cut(s) 213, 266, 1154, 1340
SspI AATATT 1 cut(s) 585
SspMI CTAG 5 cut(s) 180, 210, 275, 891, 975
StyD4I CCNGG 1 cut(s) 1546
StyI CCWWGG 2 cut(s) 128, 911
TaaI ACNGT 3 cut(s) 865, 905, 1373
TaqI TCGA 3 cut(s) 1263, 1662, 1869
TatI WGTACW 1 cut(s) 777
TauI GCSGC 2 cut(s) 269, 1343
TfiI GAWTC 4 cut(s) 978, 1015, 1835, 1859
Tru1I TTAA 9 cut(s) 24, 83, 819, 1089, 1161, 1353, 1383, 1394, 1488
Tru9I TTAA 9 cut(s) 24, 83, 819, 1089, 1161, 1353, 1383, 1394, 1488
TscAI CASTG 3 cut(s) 946, 1542, 1736
TseFI GTSAC 1 cut(s) 982
TseI GCWGC 6 cut(s) 149, 365, 495, 1315, 1337, 1343
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 7 cut(s) 17, 528, 660, 886, 1590, 1812, 1851
TspGWI ACGGA 3 cut(s) 237, 1526, 1621
TspRI CASTG 3 cut(s) 946, 1542, 1736
VneI GTGCAC 1 cut(s) 532
VpaK11BI GGWCC 3 cut(s) 1005, 1245, 1653
VspI ATTAAT 1 cut(s) 819
XapI RAATTY 4 cut(s) 935, 1540, 1578, 1704
XceI RCATGY 5 cut(s) 1042, 1127, 1210, 1337, 1672
XcmI CCANNNNNNNNNTGG 2 cut(s) 200, 1554
XmiI GTMKAC 1 cut(s) 1066
XspI CTAG 5 cut(s) 180, 210, 275, 891, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.