BED zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G79740 AT1G79740 AT1G79740 AT1G79740 |
| fragaria_vesca | FvH4_5g00491 FvH4_5g00491 FvH4_5g00491 FvH4_7g30891 FvH4_7g30891 |
| malus_domestica | MD01G1214000.v1.1 MD04G1080400.v1.1 |
| pyrus_communis | pycom01g22470 pycom04g07280 |
| rosa_chinensis | RchiOBHm_Chr1g0379971 RchiOBHm_Chr7g0202011 |
| rosa_laevigata | RLG00000026344 |
| rosa_roxburghii | Rroxscaffold_3G00254950 |
| rosa_rugosa | Rorug01G0415900 Rorug01G0415900 Rorug01G0416000.1 Rorug07G0067300.1 |
| rosa_samantha | Rh1AG440700 Rh1BG396400 Rh1CG409600 Rh1DG427200 Rh7AG194500 Rh7BG196000 Rh7CG205800 Rh7DG201200 |
| rosa_wichuraiana | Rw1G038310 Rw7G017040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 826 |
| AccI | GTMKAC | 2 cut(s) | 921, 1347 |
| AccII | CGCG | 1 cut(s) | 1083 |
| AccIII | TCCGGA | 1 cut(s) | 1000 |
| AciI | CCGC | 2 cut(s) | 278, 934 |
| AclWI | GGATC | 2 cut(s) | 945, 1400 |
| AcoI | YGGCCR | 1 cut(s) | 765 |
| AcsI | RAATTY | 3 cut(s) | 446, 545, 1010 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 824, 1147, 1183 |
| AflIII | ACRYGT | 2 cut(s) | 648, 1219 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 175 |
| AjnI | CCWGG | 3 cut(s) | 28, 848, 1171 |
| AluBI | AGCT | 4 cut(s) | 841, 971, 1057, 1394 |
| AluI | AGCT | 4 cut(s) | 841, 971, 1057, 1394 |
| Alw26I | GTCTC | 2 cut(s) | 411, 1072 |
| AlwI | GGATC | 2 cut(s) | 945, 1400 |
| Aor13HI | TCCGGA | 1 cut(s) | 1000 |
| AoxI | GGCC | 4 cut(s) | 310, 765, 852, 1174 |
| ApeKI | GCWGC | 6 cut(s) | 962, 965, 968, 1137, 1251, 1541 |
| ApoI | RAATTY | 3 cut(s) | 446, 545, 1010 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 1553 |
| AspLEI | GCGC | 1 cut(s) | 1311 |
| AspS9I | GGNCC | 6 cut(s) | 26, 41, 129, 219, 311, 852 |
| AsuC2I | CCSGG | 3 cut(s) | 314, 361, 984 |
| AsuHPI | GGTGA | 4 cut(s) | 201, 478, 1161, 1526 |
| AsuII | TTCGAA | 1 cut(s) | 500 |
| AvaII | GGWCC | 4 cut(s) | 26, 41, 129, 219 |
| BalI | TGGCCA | 1 cut(s) | 767 |
| BauI | CACGAG | 1 cut(s) | 1090 |
| BbsI | GAAGAC | 1 cut(s) | 68 |
| BbvI | GCAGC | 6 cut(s) | 974, 977, 980, 1149, 1263, 1528 |
| BccI | CCATC | 5 cut(s) | 52, 155, 776, 1235, 1502 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 133, 167, 1300, 1334 |
| BciT130I | CCWGG | 3 cut(s) | 30, 850, 1173 |
| BcnI | CCSGG | 3 cut(s) | 314, 361, 984 |
| BcoDI | GTCTC | 2 cut(s) | 411, 1072 |
| BfmI | CTRYAG | 1 cut(s) | 101 |
| BfuAI | ACCTGC | 1 cut(s) | 826 |
| BisI | GCNGC | 6 cut(s) | 963, 966, 969, 1138, 1252, 1542 |
| BlsI | GCNGC | 6 cut(s) | 964, 967, 970, 1139, 1253, 1543 |
| Bme1390I | CCNGG | 6 cut(s) | 30, 314, 361, 850, 984, 1173 |
| Bme18I | GGWCC | 4 cut(s) | 26, 41, 129, 219 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 175 |
| BmgT120I | GGNCC | 6 cut(s) | 26, 41, 129, 219, 311, 852 |
| BmrFI | CCNGG | 6 cut(s) | 30, 314, 361, 850, 984, 1173 |
| BmrI | ACTGGG | 2 cut(s) | 561, 1131 |
| BmsI | GCATC | 7 cut(s) | 232, 254, 464, 486, 516, 588, 996 |
| BmuI | ACTGGG | 2 cut(s) | 561, 1131 |
| BpiI | GAAGAC | 1 cut(s) | 68 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 434, 466, 1317, 1349 |
| BpmI | CTGGAG | 4 cut(s) | 763, 828, 1070, 1297 |
| Bpu14I | TTCGAA | 1 cut(s) | 500 |
| BpuEI | CTTGAG | 1 cut(s) | 1349 |
| BpuMI | CCSGG | 3 cut(s) | 314, 361, 984 |
| Bsa29I | ATCGAT | 2 cut(s) | 863, 1320 |
| BsaJI | CCNNGG | 4 cut(s) | 360, 849, 855, 982 |
| BsaWI | WCCGGW | 1 cut(s) | 1000 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 590, 620 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 824, 1147, 1183 |
| Bse1I | ACTGG | 3 cut(s) | 556, 1126, 1280 |
| Bse3DI | GCAATG | 1 cut(s) | 1152 |
| BseAI | TCCGGA | 1 cut(s) | 1000 |
| BseBI | CCWGG | 3 cut(s) | 30, 850, 1173 |
| BseCI | ATCGAT | 2 cut(s) | 863, 1320 |
| BseDI | CCNNGG | 4 cut(s) | 360, 849, 855, 982 |
| BseGI | GGATG | 4 cut(s) | 247, 987, 1131, 1513 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 824, 1147, 1183 |
| BseMI | GCAATG | 1 cut(s) | 1152 |
| BseMII | CTCAG | 3 cut(s) | 654, 1062, 1252 |
| BseNI | ACTGG | 3 cut(s) | 556, 1126, 1280 |
| BseRI | GAGGAG | 1 cut(s) | 1466 |
| BseXI | GCAGC | 6 cut(s) | 974, 977, 980, 1149, 1263, 1528 |
| BsgI | GTGCAG | 2 cut(s) | 347, 1188 |
| Bsh1236I | CGCG | 1 cut(s) | 1083 |
| BshFI | GGCC | 4 cut(s) | 312, 767, 854, 1176 |
| BshVI | ATCGAT | 2 cut(s) | 863, 1320 |
| BsiSI | CCGG | 4 cut(s) | 314, 360, 984, 1001 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 824, 1147, 1183 |
| BsmAI | GTCTC | 2 cut(s) | 411, 1072 |
| BsmBI | CGTCTC | 1 cut(s) | 1072 |
| BsmI | GAATGC | 1 cut(s) | 1283 |
| BsnI | GGCC | 4 cut(s) | 312, 767, 854, 1176 |
| Bsp119I | TTCGAA | 1 cut(s) | 500 |
| Bsp13I | TCCGGA | 1 cut(s) | 1000 |
| Bsp143I | GATC | 6 cut(s) | 330, 532, 937, 1317, 1405, 1486 |
| BspACI | CCGC | 2 cut(s) | 278, 934 |
| BspANI | GGCC | 4 cut(s) | 312, 767, 854, 1176 |
| BspCNI | CTCAG | 3 cut(s) | 655, 1063, 1251 |
| BspDI | ATCGAT | 2 cut(s) | 863, 1320 |
| BspEI | TCCGGA | 1 cut(s) | 1000 |
| BspFNI | CGCG | 1 cut(s) | 1083 |
| BspMI | ACCTGC | 1 cut(s) | 826 |
| BspPI | GGATC | 2 cut(s) | 945, 1400 |
| BspT104I | TTCGAA | 1 cut(s) | 500 |
| BsrDI | GCAATG | 1 cut(s) | 1152 |
| BsrI | ACTGG | 3 cut(s) | 556, 1126, 1280 |
| BssECI | CCNNGG | 4 cut(s) | 360, 849, 855, 982 |
| BssMI | GATC | 6 cut(s) | 330, 532, 937, 1317, 1405, 1486 |
| BssSI | CACGAG | 1 cut(s) | 1090 |
| BssT1I | CCWWGG | 1 cut(s) | 855 |
| Bst2BI | CACGAG | 1 cut(s) | 1090 |
| Bst2UI | CCWGG | 3 cut(s) | 30, 850, 1173 |
| Bst4CI | ACNGT | 3 cut(s) | 105, 633, 1533 |
| Bst6I | CTCTTC | 1 cut(s) | 750 |
| BstBI | TTCGAA | 1 cut(s) | 500 |
| BstDEI | CTNAG | 4 cut(s) | 663, 910, 1071, 1238 |
| BstF5I | GGATG | 4 cut(s) | 247, 987, 1131, 1513 |
| BstFNI | CGCG | 1 cut(s) | 1083 |
| BstHHI | GCGC | 1 cut(s) | 1311 |
| BstKTI | GATC | 6 cut(s) | 333, 535, 940, 1320, 1408, 1489 |
| BstMAI | GTCTC | 2 cut(s) | 411, 1072 |
| BstMBI | GATC | 6 cut(s) | 330, 532, 937, 1317, 1405, 1486 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 968, 1151, 1248, 1400 |
| BstNI | CCWGG | 3 cut(s) | 30, 850, 1173 |
| BstNSI | RCATGY | 2 cut(s) | 652, 962 |
| BstSCI | CCNGG | 6 cut(s) | 28, 312, 359, 848, 982, 1171 |
| BstSFI | CTRYAG | 1 cut(s) | 101 |
| BstUI | CGCG | 1 cut(s) | 1083 |
| BstV1I | GCAGC | 6 cut(s) | 974, 977, 980, 1149, 1263, 1528 |
| BstV2I | GAAGAC | 1 cut(s) | 68 |
| BstX2I | RGATCY | 1 cut(s) | 1405 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1571 |
| BstYI | RGATCY | 1 cut(s) | 1405 |
| Bsu15I | ATCGAT | 2 cut(s) | 863, 1320 |
| BsuRI | GGCC | 4 cut(s) | 312, 767, 854, 1176 |
| BsuTUI | ATCGAT | 2 cut(s) | 863, 1320 |
| BtgZI | GCGATG | 1 cut(s) | 136 |
| BtsCI | GGATG | 4 cut(s) | 247, 987, 1131, 1513 |
| BtsI | GCAGTG | 1 cut(s) | 756 |
| BtsIMutI | CAGTG | 1 cut(s) | 756 |
| BveI | ACCTGC | 1 cut(s) | 826 |
| CfoI | GCGC | 1 cut(s) | 1311 |
| Cfr13I | GGNCC | 6 cut(s) | 26, 41, 129, 219, 311, 852 |
| ClaI | ATCGAT | 2 cut(s) | 863, 1320 |
| CseI | GACGC | 1 cut(s) | 1089 |
| CviAII | CATG | 7 cut(s) | 69, 162, 337, 649, 959, 1432, 1546 |
| DdeI | CTNAG | 4 cut(s) | 663, 910, 1071, 1238 |
| DpnI | GATC | 6 cut(s) | 332, 534, 939, 1319, 1407, 1488 |
| DpnII | GATC | 6 cut(s) | 330, 532, 937, 1317, 1405, 1486 |
| DraI | TTTAAA | 2 cut(s) | 978, 1042 |
| DriI | GACNNNNNGTC | 1 cut(s) | 175 |
| EaeI | YGGCCR | 1 cut(s) | 765 |
| Eam1104I | CTCTTC | 1 cut(s) | 750 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 175 |
| EarI | CTCTTC | 1 cut(s) | 750 |
| EciI | GGCGGA | 1 cut(s) | 293 |
| Eco130I | CCWWGG | 1 cut(s) | 855 |
| Eco32I | GATATC | 1 cut(s) | 916 |
| Eco47I | GGWCC | 4 cut(s) | 26, 41, 129, 219 |
| EcoRI | GAATTC | 1 cut(s) | 446 |
| EcoRII | CCWGG | 3 cut(s) | 28, 848, 1171 |
| EcoRV | GATATC | 1 cut(s) | 916 |
| EcoT14I | CCWWGG | 1 cut(s) | 855 |
| EcoT22I | ATGCAT | 2 cut(s) | 247, 479 |
| ErhI | CCWWGG | 1 cut(s) | 855 |
| Esp3I | CGTCTC | 1 cut(s) | 1072 |
| FaeI | CATG | 7 cut(s) | 72, 165, 340, 652, 962, 1435, 1549 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 893, 925, 1019, 1051 |
| FatI | CATG | 7 cut(s) | 68, 161, 336, 648, 958, 1431, 1545 |
| FauI | CCCGC | 1 cut(s) | 927 |
| FblI | GTMKAC | 2 cut(s) | 921, 1347 |
| Fnu4HI | GCNGC | 6 cut(s) | 963, 966, 969, 1138, 1252, 1542 |
| FokI | GGATG | 4 cut(s) | 254, 974, 1138, 1520 |
| Fsp4HI | GCNGC | 6 cut(s) | 963, 966, 969, 1138, 1252, 1542 |
| GlaI | GCGC | 1 cut(s) | 1310 |
| GluI | GCNGC | 6 cut(s) | 963, 966, 969, 1138, 1252, 1542 |
| GsuI | CTGGAG | 4 cut(s) | 763, 828, 1070, 1297 |
| HaeIII | GGCC | 4 cut(s) | 312, 767, 854, 1176 |
| HapII | CCGG | 4 cut(s) | 314, 360, 984, 1001 |
| HgaI | GACGC | 1 cut(s) | 1089 |
| HhaI | GCGC | 1 cut(s) | 1311 |
| Hin1II | CATG | 7 cut(s) | 72, 165, 340, 652, 962, 1435, 1549 |
| Hin6I | GCGC | 1 cut(s) | 1309 |
| HinP1I | GCGC | 1 cut(s) | 1309 |
| HindIII | AAGCTT | 1 cut(s) | 1055 |
| HinfI | GANTC | 6 cut(s) | 290, 860, 1093, 1199, 1294, 1411 |
| HpaII | CCGG | 4 cut(s) | 314, 360, 984, 1001 |
| HphI | GGTGA | 4 cut(s) | 201, 478, 1161, 1526 |
| Hpy166II | GTNNAC | 3 cut(s) | 129, 922, 1348 |
| Hpy188I | TCNGA | 7 cut(s) | 91, 537, 775, 1232, 1303, 1410, 1441 |
| Hpy8I | GTNNAC | 3 cut(s) | 129, 922, 1348 |
| Hpy99I | CGWCG | 1 cut(s) | 1424 |
| HpyAV | CCTTC | 3 cut(s) | 448, 916, 1108 |
| HpyCH4III | ACNGT | 3 cut(s) | 105, 633, 1533 |
| HpyCH4IV | ACGT | 1 cut(s) | 1219 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 968, 1151, 1248, 1400 |
| HpyF3I | CTNAG | 4 cut(s) | 663, 910, 1071, 1238 |
| HpySE526I | ACGT | 1 cut(s) | 1219 |
| Hsp92II | CATG | 7 cut(s) | 72, 165, 340, 652, 962, 1435, 1549 |
| HspAI | GCGC | 1 cut(s) | 1309 |
| Kpn2I | TCCGGA | 1 cut(s) | 1000 |
| Kzo9I | GATC | 6 cut(s) | 330, 532, 937, 1317, 1405, 1486 |
| Lsp1109I | GCAGC | 6 cut(s) | 974, 977, 980, 1149, 1263, 1528 |
| LweI | GCATC | 7 cut(s) | 232, 254, 464, 486, 516, 588, 996 |
| MaeII | ACGT | 1 cut(s) | 1219 |
| MaeIII | GTNAC | 1 cut(s) | 1514 |
| MalI | GATC | 6 cut(s) | 332, 534, 939, 1319, 1407, 1488 |
| MboI | GATC | 6 cut(s) | 330, 532, 937, 1317, 1405, 1486 |
| MboII | GAAGA | 2 cut(s) | 73, 767 |
| MflI | RGATCY | 1 cut(s) | 1405 |
| MlsI | TGGCCA | 1 cut(s) | 767 |
| MluCI | AATT | 5 cut(s) | 385, 446, 545, 1010, 1415 |
| MluNI | TGGCCA | 1 cut(s) | 767 |
| MlyI | GAGTC | 1 cut(s) | 1102 |
| MmeI | TCCRAC | 1 cut(s) | 621 |
| Mox20I | TGGCCA | 1 cut(s) | 767 |
| Mph1103I | ATGCAT | 2 cut(s) | 247, 479 |
| MroI | TCCGGA | 1 cut(s) | 1000 |
| MscI | TGGCCA | 1 cut(s) | 767 |
| MseI | TTAA | 5 cut(s) | 188, 428, 786, 977, 1041 |
| MslI | CAYNNNNRTG | 3 cut(s) | 401, 1430, 1441 |
| Msp20I | TGGCCA | 1 cut(s) | 767 |
| MspI | CCGG | 4 cut(s) | 314, 360, 984, 1001 |
| MspR9I | CCNGG | 6 cut(s) | 30, 314, 361, 850, 984, 1173 |
| Mva1269I | GAATGC | 1 cut(s) | 1283 |
| MvaI | CCWGG | 3 cut(s) | 30, 850, 1173 |
| MvnI | CGCG | 1 cut(s) | 1083 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 968, 1151, 1248, 1400 |
| NciI | CCSGG | 3 cut(s) | 314, 361, 984 |
| NdeII | GATC | 6 cut(s) | 330, 532, 937, 1317, 1405, 1486 |
| NlaIII | CATG | 7 cut(s) | 72, 165, 340, 652, 962, 1435, 1549 |
| NmuCI | GTSAC | 1 cut(s) | 1514 |
| NsiI | ATGCAT | 2 cut(s) | 247, 479 |
| NspI | RCATGY | 2 cut(s) | 652, 962 |
| NspV | TTCGAA | 1 cut(s) | 500 |
| PciI | ACATGT | 1 cut(s) | 648 |
| PctI | GAATGC | 1 cut(s) | 1283 |
| PfeI | GAWTC | 5 cut(s) | 290, 860, 1199, 1294, 1411 |
| PflFI | GACNNNGTC | 1 cut(s) | 1343 |
| PfoI | TCCNGGA | 1 cut(s) | 28 |
| PkrI | GCNGC | 6 cut(s) | 964, 967, 970, 1139, 1253, 1543 |
| PleI | GAGTC | 1 cut(s) | 1101 |
| PpsI | GAGTC | 1 cut(s) | 1101 |
| PscI | ACATGT | 1 cut(s) | 648 |
| Psp6I | CCWGG | 3 cut(s) | 28, 848, 1171 |
| PspGI | CCWGG | 3 cut(s) | 28, 848, 1171 |
| PspPI | GGNCC | 6 cut(s) | 26, 41, 129, 219, 311, 852 |
| PsuI | RGATCY | 1 cut(s) | 1405 |
| PsyI | GACNNNGTC | 1 cut(s) | 1343 |
| RseI | CAYNNNNRTG | 3 cut(s) | 401, 1430, 1441 |
| SaqAI | TTAA | 5 cut(s) | 188, 428, 786, 977, 1041 |
| SatI | GCNGC | 6 cut(s) | 963, 966, 969, 1138, 1252, 1542 |
| Sau3AI | GATC | 6 cut(s) | 330, 532, 937, 1317, 1405, 1486 |
| Sau96I | GGNCC | 6 cut(s) | 26, 41, 129, 219, 311, 852 |
| SchI | GAGTC | 1 cut(s) | 1102 |
| ScrFI | CCNGG | 6 cut(s) | 30, 314, 361, 850, 984, 1173 |
| SfaNI | GCATC | 7 cut(s) | 232, 254, 464, 486, 516, 588, 996 |
| SfcI | CTRYAG | 1 cut(s) | 101 |
| SfuI | TTCGAA | 1 cut(s) | 500 |
| SinI | GGWCC | 4 cut(s) | 26, 41, 129, 219 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 401, 1430, 1441 |
| SmlI | CTYRAG | 1 cut(s) | 1364 |
| SmoI | CTYRAG | 1 cut(s) | 1364 |
| Sse9I | AATT | 5 cut(s) | 385, 446, 545, 1010, 1415 |
| SsiI | CCGC | 2 cut(s) | 278, 934 |
| SspI | AATATT | 1 cut(s) | 1101 |
| StyD4I | CCNGG | 6 cut(s) | 28, 312, 359, 848, 982, 1171 |
| StyI | CCWWGG | 1 cut(s) | 855 |
| TaaI | ACNGT | 3 cut(s) | 105, 633, 1533 |
| TaiI | ACGT | 1 cut(s) | 1222 |
| TaqI | TCGA | 7 cut(s) | 452, 500, 726, 863, 1266, 1320, 1419 |
| TasI | AATT | 5 cut(s) | 385, 446, 545, 1010, 1415 |
| TfiI | GAWTC | 5 cut(s) | 290, 860, 1199, 1294, 1411 |
| Tru1I | TTAA | 5 cut(s) | 188, 428, 786, 977, 1041 |
| Tru9I | TTAA | 5 cut(s) | 188, 428, 786, 977, 1041 |
| TscAI | CASTG | 1 cut(s) | 756 |
| TseFI | GTSAC | 1 cut(s) | 1514 |
| TseI | GCWGC | 6 cut(s) | 962, 965, 968, 1137, 1251, 1541 |
| Tsp45I | GTSAC | 1 cut(s) | 1514 |
| TspDTI | ATGAA | 3 cut(s) | 195, 496, 554 |
| TspGWI | ACGGA | 1 cut(s) | 232 |
| TspRI | CASTG | 1 cut(s) | 756 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1343 |
| VpaK11BI | GGWCC | 4 cut(s) | 26, 41, 129, 219 |
| XapI | RAATTY | 3 cut(s) | 446, 545, 1010 |
| XceI | RCATGY | 2 cut(s) | 652, 962 |
| XmiI | GTMKAC | 2 cut(s) | 921, 1347 |
| Zsp2I | ATGCAT | 2 cut(s) | 247, 479 |