pycom01g22470

BED zinc finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
20050831 .. 20052489
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g22470.2

Sequence Viewer

Length: 1581 bp
ATGATTGATGCCATAACAAAGTGTGGTCCTGGATTTGTAGGTCCATCTGCCGAAACTTTGAAGACTACATGGCTGGAAAGTATCAAGTCTGAAATGAGCCTACAGTCAAAAGATATTGAAAAAGAGTGGACCACCACAGGTTGCACCATCATCGCTGACACATGGACTGACAATAAGTCAAGAGCCTTAATCAACTTTTTGGTTTCATCACCCTCACGGACCTTTTTTCACAAGTCGGTGGATGCATCTGCGTATTTCAAGAACACAAAATGCTTGGCGGATTTATTTGATTCTGTTATACAAGATTTTGGCCCGGAAAATGTTGTGCAGATCATCATGGATAGTAGTTTCAACTATACCGGGGTTGCAAACCATATCTTGCAGAATTATTCAACCATTTTCGTGTCTCCTTGTGCCTCTCAATGCTTAAATCTTGTTTTGGAGGAATTCTCGAAGGTAGATTGGGTGAATAGATGCATCTTACAAGCACAAACCATTTCGAAGTTCATCTATAACAATGCCCCGATGCTTGATCTGATGAAAAAATTTACTGGGGGGCAGGAACTCATTAGAACAGGCATCACGAAGTCTGTTTCCAACTTCCTCTCCTTGCAATCTATCTTGAAGCAACGGTCAAGGTTGAAGCACATGTTCAACAGCCCTGAGTATTGCAACAACTCATCTTATGCGAATAAAACACAGAGCATTTCGTGTATTTCCATTGTCGAGGACAATGATTTCTGGAGGGCAGTGGAAGAGAGTGTGGCCATCTCCGAGCCATTTCTTAAAGTGTTGAGGGAAGTGTCTGGAGGAAAACCTGCTGTGGGTTATATATATGAGCTAATGACCAGGGCCAAGGAATCGATAAGGACATACTATATAATGGACGAGAATAAGTGCAAGACCTTCTTAGATATCGTAGACAGAAAGTGGCGGGATCAACTCCATTCGCCTCTACATGCAGCAGCAGCTTTTTTAAACCCCGGCATCCAATACAATCCGGAAATCAAATTTCTTACATCTATAAAGGAGGACTTCTTTAAAGTTCTGGAGAAGCTTCTGCCTGTGCCTGAGATGAGACGCGACATCACGAGTCAAATATTTACATTTACGAAGGCAACTGGGATGTTCGGTTGCAGCCTTGCAATGGAAGCAAGAGATGTAGTTTCACCTGGCCTTTGGTGGGAACAATATGGCGATTCTGCACCCGTGTTGCAACGTGTTGCCATCAGAATACTCAGCCAAGTTTGCAGCACATTCACATTCGAGAGGAACTGGAGTGCATTCCAGCAGATTCACTCGGAGAAGCGCAATAAGATCGATAGAGAAACACTCAATGACCTCGTCTACATAAACTACAACCTCAAGTTAGCAAGGCAGACGAGAACGAAAGCTCTGGAAGCAGATCCGATTCAATTCGACGACATTGACATGACATCAGAGTGGGTGGAGGAGAGTGATAGCCCAAGCCCTACTCAATGGCTTGATCGGTTCGGGTCTGCTCTGGATGGGGGTGACTTGAACACAAGACAGTTTAGTGCTGCCATGTTTGGTTCAAACGACCACATCTTTGGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

527

Amino Acids

59.83

Weight (kDa)

5.69

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 826
AccI GTMKAC 2 cut(s) 921, 1347
AccII CGCG 1 cut(s) 1083
AccIII TCCGGA 1 cut(s) 1000
AciI CCGC 2 cut(s) 278, 934
AclWI GGATC 2 cut(s) 945, 1400
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 3 cut(s) 446, 545, 1010
AfiI CCNNNNNNNGG 3 cut(s) 824, 1147, 1183
AflIII ACRYGT 2 cut(s) 648, 1219
AhdI GACNNNNNGTC 1 cut(s) 175
AjnI CCWGG 3 cut(s) 28, 848, 1171
AluBI AGCT 4 cut(s) 841, 971, 1057, 1394
AluI AGCT 4 cut(s) 841, 971, 1057, 1394
Alw26I GTCTC 2 cut(s) 411, 1072
AlwI GGATC 2 cut(s) 945, 1400
Aor13HI TCCGGA 1 cut(s) 1000
AoxI GGCC 4 cut(s) 310, 765, 852, 1174
ApeKI GCWGC 6 cut(s) 962, 965, 968, 1137, 1251, 1541
ApoI RAATTY 3 cut(s) 446, 545, 1010
ArsI GACNNNNNNTTYG 1 cut(s) 1553
AspLEI GCGC 1 cut(s) 1311
AspS9I GGNCC 6 cut(s) 26, 41, 129, 219, 311, 852
AsuC2I CCSGG 3 cut(s) 314, 361, 984
AsuHPI GGTGA 4 cut(s) 201, 478, 1161, 1526
AsuII TTCGAA 1 cut(s) 500
AvaII GGWCC 4 cut(s) 26, 41, 129, 219
BalI TGGCCA 1 cut(s) 767
BauI CACGAG 1 cut(s) 1090
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 6 cut(s) 974, 977, 980, 1149, 1263, 1528
BccI CCATC 5 cut(s) 52, 155, 776, 1235, 1502
BcgI CGANNNNNNTGC 4 cut(s) 133, 167, 1300, 1334
BciT130I CCWGG 3 cut(s) 30, 850, 1173
BcnI CCSGG 3 cut(s) 314, 361, 984
BcoDI GTCTC 2 cut(s) 411, 1072
BfmI CTRYAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 826
BisI GCNGC 6 cut(s) 963, 966, 969, 1138, 1252, 1542
BlsI GCNGC 6 cut(s) 964, 967, 970, 1139, 1253, 1543
Bme1390I CCNGG 6 cut(s) 30, 314, 361, 850, 984, 1173
Bme18I GGWCC 4 cut(s) 26, 41, 129, 219
BmeRI GACNNNNNGTC 1 cut(s) 175
BmgT120I GGNCC 6 cut(s) 26, 41, 129, 219, 311, 852
BmrFI CCNGG 6 cut(s) 30, 314, 361, 850, 984, 1173
BmrI ACTGGG 2 cut(s) 561, 1131
BmsI GCATC 7 cut(s) 232, 254, 464, 486, 516, 588, 996
BmuI ACTGGG 2 cut(s) 561, 1131
BpiI GAAGAC 1 cut(s) 68
BplI GAGNNNNNCTC 4 cut(s) 434, 466, 1317, 1349
BpmI CTGGAG 4 cut(s) 763, 828, 1070, 1297
Bpu14I TTCGAA 1 cut(s) 500
BpuEI CTTGAG 1 cut(s) 1349
BpuMI CCSGG 3 cut(s) 314, 361, 984
Bsa29I ATCGAT 2 cut(s) 863, 1320
BsaJI CCNNGG 4 cut(s) 360, 849, 855, 982
BsaWI WCCGGW 1 cut(s) 1000
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 3 cut(s) 824, 1147, 1183
Bse1I ACTGG 3 cut(s) 556, 1126, 1280
Bse3DI GCAATG 1 cut(s) 1152
BseAI TCCGGA 1 cut(s) 1000
BseBI CCWGG 3 cut(s) 30, 850, 1173
BseCI ATCGAT 2 cut(s) 863, 1320
BseDI CCNNGG 4 cut(s) 360, 849, 855, 982
BseGI GGATG 4 cut(s) 247, 987, 1131, 1513
BseLI CCNNNNNNNGG 3 cut(s) 824, 1147, 1183
BseMI GCAATG 1 cut(s) 1152
BseMII CTCAG 3 cut(s) 654, 1062, 1252
BseNI ACTGG 3 cut(s) 556, 1126, 1280
BseRI GAGGAG 1 cut(s) 1466
BseXI GCAGC 6 cut(s) 974, 977, 980, 1149, 1263, 1528
BsgI GTGCAG 2 cut(s) 347, 1188
Bsh1236I CGCG 1 cut(s) 1083
BshFI GGCC 4 cut(s) 312, 767, 854, 1176
BshVI ATCGAT 2 cut(s) 863, 1320
BsiSI CCGG 4 cut(s) 314, 360, 984, 1001
BslI CCNNNNNNNGG 3 cut(s) 824, 1147, 1183
BsmAI GTCTC 2 cut(s) 411, 1072
BsmBI CGTCTC 1 cut(s) 1072
BsmI GAATGC 1 cut(s) 1283
BsnI GGCC 4 cut(s) 312, 767, 854, 1176
Bsp119I TTCGAA 1 cut(s) 500
Bsp13I TCCGGA 1 cut(s) 1000
Bsp143I GATC 6 cut(s) 330, 532, 937, 1317, 1405, 1486
BspACI CCGC 2 cut(s) 278, 934
BspANI GGCC 4 cut(s) 312, 767, 854, 1176
BspCNI CTCAG 3 cut(s) 655, 1063, 1251
BspDI ATCGAT 2 cut(s) 863, 1320
BspEI TCCGGA 1 cut(s) 1000
BspFNI CGCG 1 cut(s) 1083
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 2 cut(s) 945, 1400
BspT104I TTCGAA 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 1152
BsrI ACTGG 3 cut(s) 556, 1126, 1280
BssECI CCNNGG 4 cut(s) 360, 849, 855, 982
BssMI GATC 6 cut(s) 330, 532, 937, 1317, 1405, 1486
BssSI CACGAG 1 cut(s) 1090
BssT1I CCWWGG 1 cut(s) 855
Bst2BI CACGAG 1 cut(s) 1090
Bst2UI CCWGG 3 cut(s) 30, 850, 1173
Bst4CI ACNGT 3 cut(s) 105, 633, 1533
Bst6I CTCTTC 1 cut(s) 750
BstBI TTCGAA 1 cut(s) 500
BstDEI CTNAG 4 cut(s) 663, 910, 1071, 1238
BstF5I GGATG 4 cut(s) 247, 987, 1131, 1513
BstFNI CGCG 1 cut(s) 1083
BstHHI GCGC 1 cut(s) 1311
BstKTI GATC 6 cut(s) 333, 535, 940, 1320, 1408, 1489
BstMAI GTCTC 2 cut(s) 411, 1072
BstMBI GATC 6 cut(s) 330, 532, 937, 1317, 1405, 1486
BstMWI GCNNNNNNNGC 4 cut(s) 968, 1151, 1248, 1400
BstNI CCWGG 3 cut(s) 30, 850, 1173
BstNSI RCATGY 2 cut(s) 652, 962
BstSCI CCNGG 6 cut(s) 28, 312, 359, 848, 982, 1171
BstSFI CTRYAG 1 cut(s) 101
BstUI CGCG 1 cut(s) 1083
BstV1I GCAGC 6 cut(s) 974, 977, 980, 1149, 1263, 1528
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 1405
BstXI CCANNNNNNTGG 1 cut(s) 1571
BstYI RGATCY 1 cut(s) 1405
Bsu15I ATCGAT 2 cut(s) 863, 1320
BsuRI GGCC 4 cut(s) 312, 767, 854, 1176
BsuTUI ATCGAT 2 cut(s) 863, 1320
BtgZI GCGATG 1 cut(s) 136
BtsCI GGATG 4 cut(s) 247, 987, 1131, 1513
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 1 cut(s) 756
BveI ACCTGC 1 cut(s) 826
CfoI GCGC 1 cut(s) 1311
Cfr13I GGNCC 6 cut(s) 26, 41, 129, 219, 311, 852
ClaI ATCGAT 2 cut(s) 863, 1320
CseI GACGC 1 cut(s) 1089
CviAII CATG 7 cut(s) 69, 162, 337, 649, 959, 1432, 1546
DdeI CTNAG 4 cut(s) 663, 910, 1071, 1238
DpnI GATC 6 cut(s) 332, 534, 939, 1319, 1407, 1488
DpnII GATC 6 cut(s) 330, 532, 937, 1317, 1405, 1486
DraI TTTAAA 2 cut(s) 978, 1042
DriI GACNNNNNGTC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 1 cut(s) 750
Eam1105I GACNNNNNGTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 750
EciI GGCGGA 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 855
Eco32I GATATC 1 cut(s) 916
Eco47I GGWCC 4 cut(s) 26, 41, 129, 219
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 3 cut(s) 28, 848, 1171
EcoRV GATATC 1 cut(s) 916
EcoT14I CCWWGG 1 cut(s) 855
EcoT22I ATGCAT 2 cut(s) 247, 479
ErhI CCWWGG 1 cut(s) 855
Esp3I CGTCTC 1 cut(s) 1072
FaeI CATG 7 cut(s) 72, 165, 340, 652, 962, 1435, 1549
FalI AAGNNNNNCTT 4 cut(s) 893, 925, 1019, 1051
FatI CATG 7 cut(s) 68, 161, 336, 648, 958, 1431, 1545
FauI CCCGC 1 cut(s) 927
FblI GTMKAC 2 cut(s) 921, 1347
Fnu4HI GCNGC 6 cut(s) 963, 966, 969, 1138, 1252, 1542
FokI GGATG 4 cut(s) 254, 974, 1138, 1520
Fsp4HI GCNGC 6 cut(s) 963, 966, 969, 1138, 1252, 1542
GlaI GCGC 1 cut(s) 1310
GluI GCNGC 6 cut(s) 963, 966, 969, 1138, 1252, 1542
GsuI CTGGAG 4 cut(s) 763, 828, 1070, 1297
HaeIII GGCC 4 cut(s) 312, 767, 854, 1176
HapII CCGG 4 cut(s) 314, 360, 984, 1001
HgaI GACGC 1 cut(s) 1089
HhaI GCGC 1 cut(s) 1311
Hin1II CATG 7 cut(s) 72, 165, 340, 652, 962, 1435, 1549
Hin6I GCGC 1 cut(s) 1309
HinP1I GCGC 1 cut(s) 1309
HindIII AAGCTT 1 cut(s) 1055
HinfI GANTC 6 cut(s) 290, 860, 1093, 1199, 1294, 1411
HpaII CCGG 4 cut(s) 314, 360, 984, 1001
HphI GGTGA 4 cut(s) 201, 478, 1161, 1526
Hpy166II GTNNAC 3 cut(s) 129, 922, 1348
Hpy188I TCNGA 7 cut(s) 91, 537, 775, 1232, 1303, 1410, 1441
Hpy8I GTNNAC 3 cut(s) 129, 922, 1348
Hpy99I CGWCG 1 cut(s) 1424
HpyAV CCTTC 3 cut(s) 448, 916, 1108
HpyCH4III ACNGT 3 cut(s) 105, 633, 1533
HpyCH4IV ACGT 1 cut(s) 1219
HpyF10VI GCNNNNNNNGC 4 cut(s) 968, 1151, 1248, 1400
HpyF3I CTNAG 4 cut(s) 663, 910, 1071, 1238
HpySE526I ACGT 1 cut(s) 1219
Hsp92II CATG 7 cut(s) 72, 165, 340, 652, 962, 1435, 1549
HspAI GCGC 1 cut(s) 1309
Kpn2I TCCGGA 1 cut(s) 1000
Kzo9I GATC 6 cut(s) 330, 532, 937, 1317, 1405, 1486
Lsp1109I GCAGC 6 cut(s) 974, 977, 980, 1149, 1263, 1528
LweI GCATC 7 cut(s) 232, 254, 464, 486, 516, 588, 996
MaeII ACGT 1 cut(s) 1219
MaeIII GTNAC 1 cut(s) 1514
MalI GATC 6 cut(s) 332, 534, 939, 1319, 1407, 1488
MboI GATC 6 cut(s) 330, 532, 937, 1317, 1405, 1486
MboII GAAGA 2 cut(s) 73, 767
MflI RGATCY 1 cut(s) 1405
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 5 cut(s) 385, 446, 545, 1010, 1415
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 1 cut(s) 1102
MmeI TCCRAC 1 cut(s) 621
Mox20I TGGCCA 1 cut(s) 767
Mph1103I ATGCAT 2 cut(s) 247, 479
MroI TCCGGA 1 cut(s) 1000
MscI TGGCCA 1 cut(s) 767
MseI TTAA 5 cut(s) 188, 428, 786, 977, 1041
MslI CAYNNNNRTG 3 cut(s) 401, 1430, 1441
Msp20I TGGCCA 1 cut(s) 767
MspI CCGG 4 cut(s) 314, 360, 984, 1001
MspR9I CCNGG 6 cut(s) 30, 314, 361, 850, 984, 1173
Mva1269I GAATGC 1 cut(s) 1283
MvaI CCWGG 3 cut(s) 30, 850, 1173
MvnI CGCG 1 cut(s) 1083
MwoI GCNNNNNNNGC 4 cut(s) 968, 1151, 1248, 1400
NciI CCSGG 3 cut(s) 314, 361, 984
NdeII GATC 6 cut(s) 330, 532, 937, 1317, 1405, 1486
NlaIII CATG 7 cut(s) 72, 165, 340, 652, 962, 1435, 1549
NmuCI GTSAC 1 cut(s) 1514
NsiI ATGCAT 2 cut(s) 247, 479
NspI RCATGY 2 cut(s) 652, 962
NspV TTCGAA 1 cut(s) 500
PciI ACATGT 1 cut(s) 648
PctI GAATGC 1 cut(s) 1283
PfeI GAWTC 5 cut(s) 290, 860, 1199, 1294, 1411
PflFI GACNNNGTC 1 cut(s) 1343
PfoI TCCNGGA 1 cut(s) 28
PkrI GCNGC 6 cut(s) 964, 967, 970, 1139, 1253, 1543
PleI GAGTC 1 cut(s) 1101
PpsI GAGTC 1 cut(s) 1101
PscI ACATGT 1 cut(s) 648
Psp6I CCWGG 3 cut(s) 28, 848, 1171
PspGI CCWGG 3 cut(s) 28, 848, 1171
PspPI GGNCC 6 cut(s) 26, 41, 129, 219, 311, 852
PsuI RGATCY 1 cut(s) 1405
PsyI GACNNNGTC 1 cut(s) 1343
RseI CAYNNNNRTG 3 cut(s) 401, 1430, 1441
SaqAI TTAA 5 cut(s) 188, 428, 786, 977, 1041
SatI GCNGC 6 cut(s) 963, 966, 969, 1138, 1252, 1542
Sau3AI GATC 6 cut(s) 330, 532, 937, 1317, 1405, 1486
Sau96I GGNCC 6 cut(s) 26, 41, 129, 219, 311, 852
SchI GAGTC 1 cut(s) 1102
ScrFI CCNGG 6 cut(s) 30, 314, 361, 850, 984, 1173
SfaNI GCATC 7 cut(s) 232, 254, 464, 486, 516, 588, 996
SfcI CTRYAG 1 cut(s) 101
SfuI TTCGAA 1 cut(s) 500
SinI GGWCC 4 cut(s) 26, 41, 129, 219
SmiMI CAYNNNNRTG 3 cut(s) 401, 1430, 1441
SmlI CTYRAG 1 cut(s) 1364
SmoI CTYRAG 1 cut(s) 1364
Sse9I AATT 5 cut(s) 385, 446, 545, 1010, 1415
SsiI CCGC 2 cut(s) 278, 934
SspI AATATT 1 cut(s) 1101
StyD4I CCNGG 6 cut(s) 28, 312, 359, 848, 982, 1171
StyI CCWWGG 1 cut(s) 855
TaaI ACNGT 3 cut(s) 105, 633, 1533
TaiI ACGT 1 cut(s) 1222
TaqI TCGA 7 cut(s) 452, 500, 726, 863, 1266, 1320, 1419
TasI AATT 5 cut(s) 385, 446, 545, 1010, 1415
TfiI GAWTC 5 cut(s) 290, 860, 1199, 1294, 1411
Tru1I TTAA 5 cut(s) 188, 428, 786, 977, 1041
Tru9I TTAA 5 cut(s) 188, 428, 786, 977, 1041
TscAI CASTG 1 cut(s) 756
TseFI GTSAC 1 cut(s) 1514
TseI GCWGC 6 cut(s) 962, 965, 968, 1137, 1251, 1541
Tsp45I GTSAC 1 cut(s) 1514
TspDTI ATGAA 3 cut(s) 195, 496, 554
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 1 cut(s) 756
Tth111I GACNNNGTC 1 cut(s) 1343
VpaK11BI GGWCC 4 cut(s) 26, 41, 129, 219
XapI RAATTY 3 cut(s) 446, 545, 1010
XceI RCATGY 2 cut(s) 652, 962
XmiI GTMKAC 2 cut(s) 921, 1347
Zsp2I ATGCAT 2 cut(s) 247, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.