Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004558

Physical Location & Seq

Genomic Coordinates Forward (+)

2300465 .. 2303001

Gene Structure 2537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026344

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCAGAAGCATTTTAGCACCATTTTGGATAGAAAGAAAGATGTTGTTAAATCTCCTCCTGTAAGTGTGTCTCCGGTTAAAGCTCTCATGTCTGTGGAGACACCGTCTACAATTCAGAAGGTTTTTCCTACTGTCACTCCAATGGCTCCTTCCTCCTTGAATAACCAGGAGAATGCAGAGAGAAGTATTGCTTTGTTCTTTTTCGAGAACAAGATTGACTTCAGCATAGCCCGTACTTCATCCTATCAGCTAATGATCGATGCCATAGCAAAGTGTGGTCCTGGATTTACAGGTCCATCTGCAGAAACTCTGAAGACTACATGGCTGGAAAGGTTTGATGATATTGACATGACTTCCGAGTGGGTGGAGGAGAGTGATAGCCCAAGCCCGACTCAATGGCTTGATCGATTTGGTTCTGCTCTGGATGGGAATGACTTGAATACAAGACAGTTTAACGCTGCCATGTTTGGTTCAAATGACCACATATTTGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

166

Amino Acids

18.36

Weight (kDa)

4.86

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79740 AT1G79740 AT1G79740 AT1G79740
fragaria_vesca	FvH4_5g00491 FvH4_5g00491 FvH4_5g00491 FvH4_7g30891 FvH4_7g30891
malus_domestica	MD01G1214000.v1.1 MD04G1080400.v1.1
pyrus_communis	pycom01g22470 pycom04g07280
rosa_chinensis	RchiOBHm_Chr1g0379971 RchiOBHm_Chr7g0202011
rosa_laevigata	RLG00000026344
rosa_roxburghii	Rroxscaffold_3G00254950
rosa_rugosa	Rorug01G0415900 Rorug01G0415900 Rorug01G0416000.1 Rorug07G0067300.1
rosa_samantha	Rh1AG440700 Rh1BG396400 Rh1CG409600 Rh1DG427200 Rh7AG194500 Rh7BG196000 Rh7CG205800 Rh7DG201200
rosa_wichuraiana	Rw1G038310 Rw7G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	107
AcuI	CTGAAG	2 cut(s)	205, 332
AfaI	GTAC	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	160, 439, 474
AjnI	CCWGG	2 cut(s)	165, 280
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	2 cut(s)	83, 250
AluI	AGCT	2 cut(s)	83, 250
Alw26I	GTCTC	2 cut(s)	75, 92
ApeKI	GCWGC	1 cut(s)	458
ArsI	GACNNNNNNTTYG	1 cut(s)	470
AspS9I	GGNCC	2 cut(s)	278, 293
AvaII	GGWCC	2 cut(s)	278, 293
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	2 cut(s)	304, 419
BciT130I	CCWGG	2 cut(s)	167, 282
BcoDI	GTCTC	2 cut(s)	75, 92
BfmI	CTRYAG	1 cut(s)	300
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	2 cut(s)	167, 282
Bme18I	GGWCC	2 cut(s)	278, 293
BmgT120I	GGNCC	2 cut(s)	278, 293
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	167, 282
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	320
Bsa29I	ATCGAT	2 cut(s)	258, 406
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 121, 151
BseBI	CCWGG	2 cut(s)	167, 282
BseCI	ATCGAT	2 cut(s)	258, 406
BseGI	GGATG	2 cut(s)	239, 430
BseRI	GAGGAG	2 cut(s)	45, 383
BseXI	GCAGC	1 cut(s)	445
BshVI	ATCGAT	2 cut(s)	258, 406
BsiSI	CCGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	75, 92
BsmI	GAATGC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	255, 403
BspDI	ATCGAT	2 cut(s)	258, 406
BspLI	GGNNCC	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	304
BssMI	GATC	2 cut(s)	255, 403
Bst2UI	CCWGG	2 cut(s)	167, 282
Bst4CI	ACNGT	3 cut(s)	105, 133, 450
BstF5I	GGATG	2 cut(s)	239, 430
BstKTI	GATC	2 cut(s)	258, 406
BstMAI	GTCTC	2 cut(s)	75, 92
BstMBI	GATC	2 cut(s)	255, 403
BstNI	CCWGG	2 cut(s)	167, 282
BstSCI	CCNGG	2 cut(s)	165, 280
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	488
Bsu15I	ATCGAT	2 cut(s)	258, 406
BsuTUI	ATCGAT	2 cut(s)	258, 406
BtsCI	GGATG	2 cut(s)	239, 430
Cfr13I	GGNCC	2 cut(s)	278, 293
ClaI	ATCGAT	2 cut(s)	258, 406
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	4 cut(s)	88, 321, 349, 463
CviJI	RGCY	8 cut(s)	83, 146, 230, 250, 325, 381, 387, 400
CviKI_1	RGCY	8 cut(s)	83, 146, 230, 250, 325, 381, 387, 400
CviQI	GTAC	1 cut(s)	234
DpnI	GATC	2 cut(s)	257, 405
DpnII	GATC	2 cut(s)	255, 403
Eco47I	GGWCC	2 cut(s)	278, 293
Eco57I	CTGAAG	2 cut(s)	205, 332
EcoRII	CCWGG	2 cut(s)	165, 280
FaeI	CATG	4 cut(s)	91, 324, 352, 466
FaiI	YATR	8 cut(s)	89, 227, 266, 322, 350, 464, 485, 496
FalI	AAGNNNNNCTT	4 cut(s)	175, 207, 203, 235
FatI	CATG	4 cut(s)	87, 320, 348, 462
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	2 cut(s)	226, 437
Fsp4HI	GCNGC	1 cut(s)	459
GluI	GCNGC	1 cut(s)	459
HapII	CCGG	1 cut(s)	74
Hin1II	CATG	4 cut(s)	91, 324, 352, 466
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	3 cut(s)	117, 312, 358
Hpy188III	TCNNGA	2 cut(s)	205, 422
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	2 cut(s)	112, 159
HpyCH4III	ACNGT	3 cut(s)	105, 133, 450
HpyCH4V	TGCA	3 cut(s)	4, 176, 302
Hsp92II	CATG	4 cut(s)	91, 324, 352, 466
Kzo9I	GATC	2 cut(s)	255, 403
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	9 cut(s)	72, 87, 152, 179, 267, 276, 294, 311, 407
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	1 cut(s)	250
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	257, 405
MboI	GATC	2 cut(s)	255, 403
MboII	GAAGA	1 cut(s)	325
MluCI	AATT	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	3 cut(s)	66, 163, 361
MseI	TTAA	3 cut(s)	48, 78, 453
MslI	CAYNNNNRTG	2 cut(s)	92, 140
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	167, 282
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	2 cut(s)	167, 282
NdeII	GATC	2 cut(s)	255, 403
NlaIII	CATG	4 cut(s)	91, 324, 352, 466
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	133
PctI	GAATGC	1 cut(s)	178
PflFI	GACNNNGTC	1 cut(s)	103
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	2 cut(s)	165, 280
PspGI	CCWGG	2 cut(s)	165, 280
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	2 cut(s)	278, 293
PstI	CTGCAG	1 cut(s)	304
PsyI	GACNNNGTC	1 cut(s)	103
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	2 cut(s)	92, 140
SaqAI	TTAA	3 cut(s)	48, 78, 453
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	2 cut(s)	255, 403
Sau96I	GGNCC	2 cut(s)	278, 293
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	2 cut(s)	167, 282
SetI	ASST	5 cut(s)	85, 123, 252, 295, 335
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	2 cut(s)	278, 293
SmiMI	CAYNNNNRTG	2 cut(s)	92, 140
Sse9I	AATT	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	165, 280
TaaI	ACNGT	3 cut(s)	105, 133, 450
TaqI	TCGA	3 cut(s)	204, 258, 406
TasI	AATT	1 cut(s)	111
Tru1I	TTAA	3 cut(s)	48, 78, 453
Tru9I	TTAA	3 cut(s)	48, 78, 453
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	103
VpaK11BI	GGWCC	2 cut(s)	278, 293
XmiI	GTMKAC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.