Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004558

Physical Location & Seq

Genomic Coordinates Reverse (-)

67328003 .. 67331365

Gene Structure 3363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG409600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2046 bp

ATGGTTCGAGAGAAAGATATATGTTGGGAATATGCTGAGAAATTAGACGGGAACAAGGTGAAATGCAAGTTCTGCCAGAGAGTTCTGAATGGCGGCATTAGTAGATTGAAGCATCATCTATCTCGGCTTCCAAGTAAGGGTGTAAATCCATGTAGCAAAGTAAGAGATGATGTTACTGATAAGGTGAGGACCATCATAGCATCGAAGGAGGAGGTGAAGGAAACTTCTAGTAGTAGTAAGAAGCAAAAGTTTGTCGAAGTTAAATCTCCTCCTGTAAGTGTCTCTCCGGTTAAAGCTCTCATGTCTGTGGAGACACCGTCTACAATTCAGAAGGTTTTCCCTACTGTCACTCCAATGGCCCCTTCCTCCTTGAATAACCAGGAGAATGCAGAGAGAAGTATTGCTTTGTTCTTTTTTGAGAACAAGATTGACTTCAGTATAGCCCGTACTTCATCATATCAGCTAATGATCGATGCCATAGCAAAGTGTGGTCCTGGATTTACAGGTCCATCTGCAGAAACTCTGAAGACTACATGGCTGGAAAGGGTCAAGTCTGAAATGAGTCTACAATCTAAAGATATTGAGAAAGAGTGGACTACCACAGGTTGCACTATCATTGCTGATACATGGACTGACAATAAGTCGAGAGCTTTGATCAACTTCTTGGTTTCATCACCCTCGCGGACCTTTTTTCACAAGTCTGTGGATGCATCTGCATATTTCAAGAACACAAAATGCCTTGCCGAGTTATTTGATTCGGTCATACAAGATTTTGGCGCAGAGAATGTTGTGCAGATAATCATGGATAGTAGTTTCAACTATACTGGGGTTGCAAACCATATCCTTCAGAATTATACAACCATTTTTGTGTCTCCTTGTGCCTCTCAGTGTTTAAATCTTATTTTAGAGGAATTCTCCAAGGTAGATTGGGTGAACAGATGCTTCCTACAAGCACAAACCATCTCAAAGTTCATATACAACAATGCCTCAATGCTCGATCTGATGAAAAGGTTCACTGGAGGACAGGACCTCATTAGAACTGGCATCACAAAGTCTGTGTCCAGCTTCCTCTCATTGCAAATCATTTTGAAGCAAAGATCAAGGCTGAAGCACATGTTCAATAGCCCTGAGTTCTGTACCAACTCCTCTTATGCAAATAAAACACACGGCATTTCATGTATCTCCATTATTGAGGACAATGATTTCTGGAGGGCAGCAGAAGAGTGTGTGGCCATCTCCGAGCCATTTCTCAAAGTTTTGAGGGAAGTATCTGGAGGGAAACCTGCTGTGGGTTCTATATATGAGCTAATGACCCGGGCCAAGGAATCAATAAGGACATACTACATTATGGATGAGAACAAGTGCAAGGTATTTTTAGATATAGTTGATCGAAAGTGGCGGGATCAGCTCCATTCTCCTCTACATGCAGCAGCAGCGTTTTTGAACCCCAGCATTCAATACAATCCGGAAATTAAGTTCCTCACATCTATAAAGGAGGACTTCTTTAAGGTTCTAGAGAAGCTATTGCCTTCGCCTGAAATGAGACGCGACATCACTAATCAAATATTTACATTTACAAAGGCAACTGGGATGTTTGGTTGTAGCCTAGCAATGGAAGCAAGAGATGTAGTTTCACCTGGGCTTTGGTGGGAACAATATGGCGATTCTGCACCAGTGTTACAACGAGTTGCCATCAGAATACTGAGTCAAGTTTGCAGCACTTTCACCTTTGAGAAGCATTGGAGTGCATTCCAGCAGATTCACTCTGAGAAGCGCAATAAGATCGATAGAGAGACACTGAATGACCTTGTCTACATAAACTACAACCTCAAGTTATCAAGGCAGACGAGAAACAAGAGTTTGGATGCTGATCCTATTCAGTTTGATGATATTGACATGACTTCCGAGTGGGTGGAGGAGAGTGATAGCCCAAGCCCGACTCAATGGCTTGATCGATTTGGTTCTGCTCTGGATGGGAATGACTTGAATACAAGACAGTTTAACGCTGCCATGTTTGGTTCAAATGACCAACTATTTGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

681

Amino Acids

77.32

Weight (kDa)

8.02

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-BED	PF02892	9 - 42	1.5e-06	BED zinc finger
DUF659	PF04937	170 - 321	6.1e-59	Domain of unknown function (DUF659)
Dimer_Tnp_hAT	PF05699	544 - 610	1.9e-14	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79740 AT1G79740 AT1G79740 AT1G79740
fragaria_vesca	FvH4_5g00491 FvH4_5g00491 FvH4_5g00491 FvH4_7g30891 FvH4_7g30891
malus_domestica	MD01G1214000.v1.1 MD04G1080400.v1.1
pyrus_communis	pycom01g22470 pycom04g07280
rosa_chinensis	RchiOBHm_Chr1g0379971 RchiOBHm_Chr7g0202011
rosa_laevigata	RLG00000026344
rosa_roxburghii	Rroxscaffold_3G00254950
rosa_rugosa	Rorug01G0415900 Rorug01G0415900 Rorug01G0416000.1 Rorug07G0067300.1
rosa_samantha	Rh1AG440700 Rh1BG396400 Rh1CG409600 Rh1DG427200 Rh7AG194500 Rh7BG196000 Rh7CG205800 Rh7DG201200
rosa_wichuraiana	Rw1G038310 Rw7G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1291
AccI	GTMKAC	3 cut(s)	320, 565, 1812
AccII	CGCG	2 cut(s)	682, 1548
AccIII	TCCGGA	1 cut(s)	1465
AciI	CCGC	3 cut(s)	93, 682, 1399
AclWI	GGATC	2 cut(s)	1410, 1865
AcoI	YGGCCR	1 cut(s)	1230
AcsI	RAATTY	1 cut(s)	911
AcuI	CTGAAG	4 cut(s)	418, 545, 830, 1127
AfaI	GTAC	2 cut(s)	448, 1138
AfiI	CCNNNNNNNGG	4 cut(s)	137, 1289, 1321, 1612
AflIII	ACRYGT	1 cut(s)	1113
AhdI	GACNNNNNGTC	1 cut(s)	640
AjnI	CCWGG	3 cut(s)	378, 493, 1636
AjuI	GAANNNNNNNTTGG	2 cut(s)	346, 378
AloI	GAACNNNNNNTCC	2 cut(s)	1460, 1492
AluBI	AGCT	7 cut(s)	296, 463, 650, 1065, 1306, 1408, 1522
AluI	AGCT	7 cut(s)	296, 463, 650, 1065, 1306, 1408, 1522
Alw26I	GTCTC	5 cut(s)	286, 305, 876, 1537, 1787
AlwI	GGATC	2 cut(s)	1410, 1865
Ama87I	CYCGRG	1 cut(s)	1314
Aor13HI	TCCGGA	1 cut(s)	1465
AoxI	GGCC	3 cut(s)	357, 1230, 1317
ApeKI	GCWGC	6 cut(s)	1214, 1427, 1430, 1433, 1716, 2006
ApoI	RAATTY	1 cut(s)	911
ArsI	GACNNNNNNTTYG	3 cut(s)	1043, 1075, 2018
Asp700I	GAANNNNTTC	2 cut(s)	335, 1010
AspLEI	GCGC	2 cut(s)	779, 1776
AspS9I	GGNCC	7 cut(s)	189, 358, 491, 506, 684, 1027, 1317
AsuC2I	CCSGG	2 cut(s)	1315, 1316
AsuHPI	GGTGA	7 cut(s)	70, 196, 226, 666, 943, 1626, 1717
AvaI	CYCGRG	1 cut(s)	1314
AvaII	GGWCC	5 cut(s)	189, 491, 506, 684, 1027
BalI	TGGCCA	1 cut(s)	1232
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	6 cut(s)	1226, 1439, 1442, 1445, 1728, 1993
BccI	CCATC	6 cut(s)	200, 517, 968, 1241, 1700, 1967
BceAI	ACGGC	1 cut(s)	1183
BcgI	CGANNNNNNTGC	2 cut(s)	1765, 1799
BciT130I	CCWGG	3 cut(s)	380, 495, 1638
BclI	TGATCA	1 cut(s)	654
BcnI	CCSGG	2 cut(s)	1315, 1316
BcoDI	GTCTC	5 cut(s)	286, 305, 876, 1537, 1787
BfaI	CTAG	3 cut(s)	228, 1514, 1607
BfmI	CTRYAG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	1291
BisI	GCNGC	7 cut(s)	94, 1215, 1428, 1431, 1434, 1717, 2007
BlsI	GCNGC	7 cut(s)	95, 1216, 1429, 1432, 1435, 1718, 2008
Bme1390I	CCNGG	5 cut(s)	380, 495, 1315, 1316, 1638
Bme18I	GGWCC	5 cut(s)	189, 491, 506, 684, 1027
BmeRI	GACNNNNNGTC	1 cut(s)	640
BmeT110I	CYCGRG	1 cut(s)	1314
BmgT120I	GGNCC	7 cut(s)	189, 358, 491, 506, 684, 1027, 1317
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	5 cut(s)	380, 495, 1315, 1316, 1638
BmrI	ACTGGG	2 cut(s)	834, 1596
BmsI	GCATC	8 cut(s)	121, 209, 463, 697, 719, 929, 1053, 1855
BmuI	ACTGGG	2 cut(s)	834, 1596
BpiI	GAAGAC	1 cut(s)	533
BplI	GAGNNNNNCTC	2 cut(s)	899, 931
BpmI	CTGGAG	3 cut(s)	1038, 1228, 1293
BpuEI	CTTGAG	1 cut(s)	1814
BpuMI	CCSGG	2 cut(s)	1315, 1316
Bsa29I	ATCGAT	3 cut(s)	471, 1785, 1954
BsaBI	GATNNNNATC	1 cut(s)	1869
BsaJI	CCNNGG	4 cut(s)	918, 1314, 1320, 1637
BsaWI	WCCGGW	2 cut(s)	286, 1465
BsaXI	ACNNNNNCTCC	4 cut(s)	302, 332, 334, 364
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 1289, 1321, 1612
Bse1I	ACTGG	5 cut(s)	829, 1021, 1045, 1591, 1673
Bse3DI	GCAATG	3 cut(s)	615, 1073, 1617
Bse8I	GATNNNNATC	1 cut(s)	1869
BseAI	TCCGGA	1 cut(s)	1465
BseBI	CCWGG	3 cut(s)	380, 495, 1638
BseCI	ATCGAT	3 cut(s)	471, 1785, 1954
BseDI	CCNNGG	4 cut(s)	918, 1314, 1320, 1637
BseGI	GGATG	5 cut(s)	712, 1357, 1596, 1870, 1978
BseJI	GATNNNNATC	1 cut(s)	1869
BseLI	CCNNNNNNNGG	4 cut(s)	137, 1289, 1321, 1612
BseMI	GCAATG	3 cut(s)	615, 1073, 1617
BseMII	CTCAG	5 cut(s)	27, 899, 1119, 1694, 1758
BseNI	ACTGG	5 cut(s)	829, 1021, 1045, 1591, 1673
BseRI	GAGGAG	5 cut(s)	224, 258, 1135, 1407, 1931
BseXI	GCAGC	6 cut(s)	1226, 1439, 1442, 1445, 1728, 1993
BseYI	CCCAGC	1 cut(s)	1448
BsgI	GTGCAG	2 cut(s)	812, 1653
Bsh1236I	CGCG	2 cut(s)	682, 1548
BshFI	GGCC	3 cut(s)	359, 1232, 1319
BshVI	ATCGAT	3 cut(s)	471, 1785, 1954
BsiHKCI	CYCGRG	1 cut(s)	1314
BsiSI	CCGG	3 cut(s)	287, 1315, 1466
BslI	CCNNNNNNNGG	4 cut(s)	137, 1289, 1321, 1612
BsmAI	GTCTC	5 cut(s)	286, 305, 876, 1537, 1787
BsmBI	CGTCTC	1 cut(s)	1537
BsmI	GAATGC	3 cut(s)	391, 1452, 1748
BsnI	GGCC	3 cut(s)	359, 1232, 1319
BsoBI	CYCGRG	1 cut(s)	1314
Bsp13I	TCCGGA	1 cut(s)	1465
Bsp143I	GATC	9 cut(s)	468, 654, 997, 1097, 1387, 1402, 1782, 1870, 1951
BspACI	CCGC	3 cut(s)	93, 682, 1399
BspANI	GGCC	3 cut(s)	359, 1232, 1319
BspCNI	CTCAG	5 cut(s)	28, 898, 1120, 1695, 1759
BspDI	ATCGAT	3 cut(s)	471, 1785, 1954
BspEI	TCCGGA	1 cut(s)	1465
BspFNI	CGCG	2 cut(s)	682, 1548
BspLI	GGNNCC	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	1291
BspPI	GGATC	2 cut(s)	1410, 1865
BsrDI	GCAATG	3 cut(s)	615, 1073, 1617
BsrI	ACTGG	5 cut(s)	829, 1021, 1045, 1591, 1673
BssECI	CCNNGG	4 cut(s)	918, 1314, 1320, 1637
BssMI	GATC	9 cut(s)	468, 654, 997, 1097, 1387, 1402, 1782, 1870, 1951
BssT1I	CCWWGG	2 cut(s)	918, 1320
Bst2UI	CCWGG	3 cut(s)	380, 495, 1638
Bst4CI	ACNGT	3 cut(s)	318, 346, 1998
Bst6I	CTCTTC	1 cut(s)	1215
BstAPI	GCANNNNNTGC	1 cut(s)	72
BstDEI	CTNAG	5 cut(s)	36, 885, 1128, 1703, 1767
BstF5I	GGATG	5 cut(s)	712, 1357, 1596, 1870, 1978
BstFNI	CGCG	2 cut(s)	682, 1548
BstHHI	GCGC	2 cut(s)	779, 1776
BstKTI	GATC	9 cut(s)	471, 657, 1000, 1100, 1390, 1405, 1785, 1873, 1954
BstMAI	GTCTC	5 cut(s)	286, 305, 876, 1537, 1787
BstMBI	GATC	9 cut(s)	468, 654, 997, 1097, 1387, 1402, 1782, 1870, 1951
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 1405, 1433, 1616
BstNI	CCWGG	3 cut(s)	380, 495, 1638
BstNSI	RCATGY	2 cut(s)	1117, 1427
BstSCI	CCNGG	5 cut(s)	378, 493, 1313, 1314, 1636
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	2 cut(s)	682, 1548
BstV1I	GCAGC	6 cut(s)	1226, 1439, 1442, 1445, 1728, 1993
BstV2I	GAAGAC	1 cut(s)	533
BstXI	CCANNNNNNTGG	1 cut(s)	2036
Bsu15I	ATCGAT	3 cut(s)	471, 1785, 1954
BsuRI	GGCC	3 cut(s)	359, 1232, 1319
BsuTUI	ATCGAT	3 cut(s)	471, 1785, 1954
BtsCI	GGATG	5 cut(s)	712, 1357, 1596, 1870, 1978
BtsIMutI	CAGTG	4 cut(s)	893, 1014, 1680, 1796
BveI	ACCTGC	1 cut(s)	1291
CfoI	GCGC	2 cut(s)	779, 1776
Cfr13I	GGNCC	7 cut(s)	189, 358, 491, 506, 684, 1027, 1317
Cfr9I	CCCGGG	1 cut(s)	1314
ClaI	ATCGAT	3 cut(s)	471, 1785, 1954
CseI	GACGC	1 cut(s)	1554
Csp6I	GTAC	2 cut(s)	447, 1137
CviQI	GTAC	2 cut(s)	447, 1137
DdeI	CTNAG	5 cut(s)	36, 885, 1128, 1703, 1767
DpnI	GATC	9 cut(s)	470, 656, 999, 1099, 1389, 1404, 1784, 1872, 1953
DpnII	GATC	9 cut(s)	468, 654, 997, 1097, 1387, 1402, 1782, 1870, 1951
DraI	TTTAAA	1 cut(s)	894
DriI	GACNNNNNGTC	1 cut(s)	640
EaeI	YGGCCR	1 cut(s)	1230
Eam1104I	CTCTTC	1 cut(s)	1215
Eam1105I	GACNNNNNGTC	1 cut(s)	640
EarI	CTCTTC	1 cut(s)	1215
Eco130I	CCWWGG	2 cut(s)	918, 1320
Eco47I	GGWCC	5 cut(s)	189, 491, 506, 684, 1027
Eco57I	CTGAAG	4 cut(s)	418, 545, 830, 1127
Eco88I	CYCGRG	1 cut(s)	1314
EcoO109I	RGGNCCY	1 cut(s)	1027
EcoRI	GAATTC	1 cut(s)	911
EcoRII	CCWGG	3 cut(s)	378, 493, 1636
EcoT14I	CCWWGG	2 cut(s)	918, 1320
EcoT22I	ATGCAT	1 cut(s)	712
ErhI	CCWWGG	2 cut(s)	918, 1320
Esp3I	CGTCTC	1 cut(s)	1537
FalI	AAGNNNNNCTT	6 cut(s)	388, 420, 416, 448, 1484, 1516
FauI	CCCGC	1 cut(s)	1392
FbaI	TGATCA	1 cut(s)	654
FblI	GTMKAC	3 cut(s)	320, 565, 1812
Fnu4HI	GCNGC	7 cut(s)	94, 1215, 1428, 1431, 1434, 1717, 2007
FokI	GGATG	5 cut(s)	719, 1364, 1603, 1877, 1985
Fsp4HI	GCNGC	7 cut(s)	94, 1215, 1428, 1431, 1434, 1717, 2007
FspBI	CTAG	3 cut(s)	228, 1514, 1607
GlaI	GCGC	2 cut(s)	778, 1775
GluI	GCNGC	7 cut(s)	94, 1215, 1428, 1431, 1434, 1717, 2007
GsaI	CCCAGC	1 cut(s)	1452
GsuI	CTGGAG	3 cut(s)	1038, 1228, 1293
HaeIII	GGCC	3 cut(s)	359, 1232, 1319
HapII	CCGG	3 cut(s)	287, 1315, 1466
HgaI	GACGC	1 cut(s)	1554
HhaI	GCGC	2 cut(s)	779, 1776
Hin6I	GCGC	2 cut(s)	777, 1774
HinP1I	GCGC	2 cut(s)	777, 1774
HinfI	GANTC	7 cut(s)	562, 755, 1325, 1664, 1705, 1759, 1939
HpaII	CCGG	3 cut(s)	287, 1315, 1466
HphI	GGTGA	7 cut(s)	70, 196, 226, 666, 943, 1626, 1717
Hpy166II	GTNNAC	6 cut(s)	321, 566, 594, 934, 1014, 1813
Hpy188III	TCNNGA	8 cut(s)	8, 645, 724, 1207, 1272, 1466, 1514, 1970
Hpy8I	GTNNAC	6 cut(s)	321, 566, 594, 934, 1014, 1813
HpyAV	CCTTC	6 cut(s)	199, 211, 325, 372, 854, 1539
HpyCH4III	ACNGT	3 cut(s)	318, 346, 1998
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 1405, 1433, 1616
HpyF3I	CTNAG	5 cut(s)	36, 885, 1128, 1703, 1767
HspAI	GCGC	2 cut(s)	777, 1774
Kpn2I	TCCGGA	1 cut(s)	1465
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	9 cut(s)	468, 654, 997, 1097, 1387, 1402, 1782, 1870, 1951
LmnI	GCTCC	1 cut(s)	1413
Lsp1109I	GCAGC	6 cut(s)	1226, 1439, 1442, 1445, 1728, 1993
LweI	GCATC	8 cut(s)	121, 209, 463, 697, 719, 929, 1053, 1855
MaeI	CTAG	3 cut(s)	228, 1514, 1607
MaeIII	GTNAC	3 cut(s)	172, 346, 1677
MalI	GATC	9 cut(s)	470, 656, 999, 1099, 1389, 1404, 1784, 1872, 1953
MboI	GATC	9 cut(s)	468, 654, 997, 1097, 1387, 1402, 1782, 1870, 1951
MboII	GAAGA	2 cut(s)	538, 1232
MlsI	TGGCCA	1 cut(s)	1232
MluCI	AATT	5 cut(s)	41, 324, 850, 911, 1470
MluNI	TGGCCA	1 cut(s)	1232
MlyI	GAGTC	3 cut(s)	571, 1714, 1933
Mox20I	TGGCCA	1 cut(s)	1232
Mph1103I	ATGCAT	1 cut(s)	712
MroI	TCCGGA	1 cut(s)	1465
MroXI	GAANNNNTTC	2 cut(s)	335, 1010
MscI	TGGCCA	1 cut(s)	1232
MseI	TTAA	6 cut(s)	261, 291, 893, 1473, 1506, 2001
MslI	CAYNNNNRTG	4 cut(s)	305, 353, 866, 1743
Msp20I	TGGCCA	1 cut(s)	1232
MspI	CCGG	3 cut(s)	287, 1315, 1466
MspR9I	CCNGG	5 cut(s)	380, 495, 1315, 1316, 1638
Mva1269I	GAATGC	3 cut(s)	391, 1452, 1748
MvaI	CCWGG	3 cut(s)	380, 495, 1638
MvnI	CGCG	2 cut(s)	682, 1548
MwoI	GCNNNNNNNGC	4 cut(s)	72, 1405, 1433, 1616
NciI	CCSGG	2 cut(s)	1315, 1316
NdeII	GATC	9 cut(s)	468, 654, 997, 1097, 1387, 1402, 1782, 1870, 1951
NlaIV	GGNNCC	1 cut(s)	360
NmeAIII	GCCGAG	2 cut(s)	103, 769
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	712
NspI	RCATGY	2 cut(s)	1117, 1427
PciI	ACATGT	1 cut(s)	1113
PctI	GAATGC	3 cut(s)	391, 1452, 1748
PdmI	GAANNNNTTC	2 cut(s)	335, 1010
PfeI	GAWTC	4 cut(s)	755, 1325, 1664, 1759
PflFI	GACNNNGTC	2 cut(s)	316, 1808
PfoI	TCCNGGA	1 cut(s)	493
PkrI	GCNGC	7 cut(s)	95, 1216, 1429, 1432, 1435, 1718, 2008
PleI	GAGTC	3 cut(s)	570, 1713, 1933
PpsI	GAGTC	3 cut(s)	570, 1713, 1933
PpuMI	RGGWCCY	1 cut(s)	1027
PscI	ACATGT	1 cut(s)	1113
Psp5II	RGGWCCY	1 cut(s)	1027
Psp6I	CCWGG	3 cut(s)	378, 493, 1636
PspFI	CCCAGC	1 cut(s)	1448
PspGI	CCWGG	3 cut(s)	378, 493, 1636
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	7 cut(s)	189, 358, 491, 506, 684, 1027, 1317
PspPPI	RGGWCCY	1 cut(s)	1027
PstI	CTGCAG	1 cut(s)	517
PsyI	GACNNNGTC	2 cut(s)	316, 1808
RsaI	GTAC	2 cut(s)	448, 1138
RsaNI	GTAC	2 cut(s)	447, 1137
RseI	CAYNNNNRTG	4 cut(s)	305, 353, 866, 1743
SaqAI	TTAA	6 cut(s)	261, 291, 893, 1473, 1506, 2001
SatI	GCNGC	7 cut(s)	94, 1215, 1428, 1431, 1434, 1717, 2007
Sau3AI	GATC	9 cut(s)	468, 654, 997, 1097, 1387, 1402, 1782, 1870, 1951
Sau96I	GGNCC	7 cut(s)	189, 358, 491, 506, 684, 1027, 1317
SchI	GAGTC	3 cut(s)	571, 1714, 1933
ScrFI	CCNGG	5 cut(s)	380, 495, 1315, 1316, 1638
SfaNI	GCATC	8 cut(s)	121, 209, 463, 697, 719, 929, 1053, 1855
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	5 cut(s)	189, 491, 506, 684, 1027
SmaI	CCCGGG	1 cut(s)	1316
SmiMI	CAYNNNNRTG	4 cut(s)	305, 353, 866, 1743
SmlI	CTYRAG	1 cut(s)	1829
SmoI	CTYRAG	1 cut(s)	1829
Sse9I	AATT	5 cut(s)	41, 324, 850, 911, 1470
SsiI	CCGC	3 cut(s)	93, 682, 1399
SspI	AATATT	1 cut(s)	1566
SspMI	CTAG	3 cut(s)	228, 1514, 1607
StyD4I	CCNGG	5 cut(s)	378, 493, 1313, 1314, 1636
StyI	CCWWGG	2 cut(s)	918, 1320
TaaI	ACNGT	3 cut(s)	318, 346, 1998
TaqI	TCGA	9 cut(s)	7, 203, 255, 471, 644, 996, 1390, 1785, 1954
TaqII	GACCGA	1 cut(s)	748
TasI	AATT	5 cut(s)	41, 324, 850, 911, 1470
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	4 cut(s)	755, 1325, 1664, 1759
Tru1I	TTAA	6 cut(s)	261, 291, 893, 1473, 1506, 2001
Tru9I	TTAA	6 cut(s)	261, 291, 893, 1473, 1506, 2001
TscAI	CASTG	4 cut(s)	893, 1021, 1680, 1803
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	6 cut(s)	1214, 1427, 1430, 1433, 1716, 2006
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	5 cut(s)	441, 660, 961, 1019, 1164
TspMI	CCCGGG	1 cut(s)	1314
TspRI	CASTG	4 cut(s)	893, 1021, 1680, 1803
Tth111I	GACNNNGTC	2 cut(s)	316, 1808
VpaK11BI	GGWCC	5 cut(s)	189, 491, 506, 684, 1027
XapI	RAATTY	1 cut(s)	911
XbaI	TCTAGA	1 cut(s)	1513
XceI	RCATGY	2 cut(s)	1117, 1427
XmaI	CCCGGG	1 cut(s)	1314
XmiI	GTMKAC	3 cut(s)	320, 565, 1812
XmnI	GAANNNNTTC	2 cut(s)	335, 1010
XspI	CTAG	3 cut(s)	228, 1514, 1607
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.