Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004558

Physical Location & Seq

Genomic Coordinates Reverse (-)

18387520 .. 18391582

Gene Structure 4063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG205800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2373 bp

ATGGTGAATTCGCTGAACCTTTCACTTACAAATAGAAAATTTGTGTCACTAAATCAAGTAGTTGAACTTGATAGCAATGTCACAGCCAGGACACGTAAATGTCTTCATCAAAATCCAACCAAAGTAAGTCACGAGCAAATCACGTGCAAGGATGTAAGCCTTTTTCCTCGGTACTATCCCCAGCGAGGAGCCGAGGACCACAAAAATATCACCGTGCTTTTCCATTTCCTCGCCACTTGCATCCGTCCTTCCCTCCAAAATCGCCGATCCACTTTGGAGATTCTGACGCCTTTGATTTGTCTCCGAGCTCCCCTCCCGAAAAAGCAAGTAAACCAGATTATGGTTCGAGGAAGAGATGCCTGTTGGGAGCACTGTGTCCTTGTCGATGCAACAAAGCAGAAGGTTAGGTGTAATTATTGTCAACGGGAGTTTAGTGGAGGGGTATACAGGATGAAGTTTCATTTAGCTCAAATAAAAAACAAAGATATAGTCCCCTGCACAGAAGTCCCAACTGATGTGCGAGATCGCATTTTAAGTATATTAAAAACTCCCAAGAAACAGAAAACTCCCAAGAAACTGAAAGTGGATAAAGCAGCTCTAGCCAATGGTCAACAAAATAGCTCTTCTGCTAGTGGTGACTTCCATCCTAACTATGCCTCTAATGGACAGAATGGAAGCACCTGCCCATCTTTGTTATTCCTATGTCCTTCACCAACTTCACAGCAAACAGTGGACGATTGTCAAAACCAAAAGCAGTATCTTGCTGATAAAAGAGTTGCTGTGTTTTTCTTCCACAATTCTATTCCATTTAGCGCTGCTAGGTCCGTATATTATCGGGAAATGGTGGATGCTGTAGCAGACTGCGGGAGGAATTACAAAGCCCCGAGCTATGAAGTACTGAGATCCACTCTGTTGGAAAAAGTGAAAAGTGATATACATGATCGCTACAAGAAATATAGAGATGAATGGAAAGAAACAGGTTGCACTATCTTATGTGAGAGCTGGTCTGATGGTAGGAACAAGTCACTTGTCGTATTCTCAGTTACATACCCCAAGGGGACCCTGTTTCTGAAGTCTGTTGATTTATCAGGTCATGAAGATGATGCTCCGTACTTGTTTGAGCTGCTCGAGTCTGTTGTCTTGGAAGTTGGTGTTGAAAATGTTGTCCAAGTTATAACGGACACTTCTTCCAGTTATGTTTATGCAGGAAGTCATCTTATGGCCAAGTACAATTCCTTGTTTTGCTCTCCTTGTGCTTCTTATTGCTTTAATAAAATGTTGGAGGATATTGGTAAACAAGAGTGGGTGTGCACGGTTCTGGAAGAGGCAAGGACCATCACAAACTTCATATGCAGTCATGGATGGACTTTGAATATGATGAGAAAATTTGCTGGTGGAAGGGAGTTGATCAGGCCAAAAATTACTAGAGTTGTGACAAATTTCCTCAACTTGAGGTCGATCGTGATTCAGGAGGACAATTTAAAGCACATGTTTTCTCATACAGAATGGTTATCTTCAGCGTCAAGTAGACACCCTGAAGCCCAAGCAGTTAAGTCCTTGTTGTATGTAGAGAGGTTTTGGAAGCATGCACAAGAAGCTGTGACCATTGCTGAACCACTGCTTAAAATCCTTAGAATTGTCGATGGGGACATGCCAGCTATGGGCTACATATACGAAGGAATAGAGAGGGCAAAGATTGCAATAAAGACACATTACAAGGGTATTGAAGAGAAATATATGCCACTTTGGGATATAATTGATCGGAGATGGAGTATGCAGCTACAATCATCCTTGCATGCAGCGGCAGCGTCTCTTAATCCTTCTCTTTTCTATAATCCAAATTTCAAGATTGATTCAAGGATGAGAAATGGGTTTCAAGAAACTATGTTAAAGATGGCTACCACTCAAGAAGATAGAATGGAAATAACTAAAGAGCATCCTGTGTATGTTACTGCACAAGGCGCTCTTGGCACTGATTTCGCAATCATGGGAAGGACATTGAATGCCCCAGGCGACTGGTGGGCAGGATATGGTTACGAAGTCCCGACACTCCAGAGATATGCCCTAAGGATATTAAGCCAGCCTTGCAGTTCCCACTGGTGCTGTTGGAACTGGAGCACCTTTGAGAGCATACATGCCAAGAAGCACAGCAGAACAGAGCCGGAAAAATTCAATGACTTGGTTTTTGTTCATTGCAATCTTTGGTTGCAGTCCATTTCTCAAAATAGAGATGGGAAATGTAAACTCATCGTGTTCGATGAAATAGATGTCAGCTCTGAATGGCCTACAGAGTTGGAATCTCCTGCCCCAATTTTGGATGATTCATTATTGGATAGCTTACCCTTGAATGTAGAGGTACTCTCTGAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

790

Amino Acids

90.3

Weight (kDa)

8.48

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF659	PF04937	295 - 446	7e-57	Domain of unknown function (DUF659)
Dimer_Tnp_hAT	PF05699	670 - 733	1.3e-07	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79740 AT1G79740 AT1G79740 AT1G79740
fragaria_vesca	FvH4_5g00491 FvH4_5g00491 FvH4_5g00491 FvH4_7g30891 FvH4_7g30891
malus_domestica	MD01G1214000.v1.1 MD04G1080400.v1.1
pyrus_communis	pycom01g22470 pycom04g07280
rosa_chinensis	RchiOBHm_Chr1g0379971 RchiOBHm_Chr7g0202011
rosa_laevigata	RLG00000026344
rosa_roxburghii	Rroxscaffold_3G00254950
rosa_rugosa	Rorug01G0415900 Rorug01G0415900 Rorug01G0416000.1 Rorug07G0067300.1
rosa_samantha	Rh1AG440700 Rh1BG396400 Rh1CG409600 Rh1DG427200 Rh7AG194500 Rh7BG196000 Rh7CG205800 Rh7DG201200
rosa_wichuraiana	Rw1G038310 Rw7G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1175
AarI	CACCTGC	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	689
AccB7I	CCANNNNNTGG	1 cut(s)	340
AccI	GTMKAC	2 cut(s)	444, 1528
AciI	CCGC	2 cut(s)	864, 1802
AclWI	GGATC	2 cut(s)	261, 897
AcoI	YGGCCR	1 cut(s)	1221
AcsI	RAATTY	6 cut(s)	7, 38, 1385, 1438, 1840, 2168
AcuI	CTGAAG	3 cut(s)	1091, 1500, 1557
AcvI	CACGTG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	287
AfaI	GTAC	5 cut(s)	173, 897, 1112, 1229, 2358
AfeI	AGCGCT	1 cut(s)	814
AfiI	CCNNNNNNNGG	4 cut(s)	185, 340, 1661, 2314
AflIII	ACRYGT	2 cut(s)	92, 1488
AjnI	CCWGG	2 cut(s)	86, 2008
Alw21I	GWGCWC	4 cut(s)	310, 372, 1313, 2120
Alw26I	GTCTC	2 cut(s)	305, 1815
Alw44I	GTGCAC	1 cut(s)	1309
AlwI	GGATC	2 cut(s)	261, 897
Ama87I	CYCGRG	2 cut(s)	883, 1127
Aor51HI	AGCGCT	1 cut(s)	814
AoxI	GGCC	3 cut(s)	1221, 1412, 2282
ApaLI	GTGCAC	1 cut(s)	1309
ApeKI	GCWGC	6 cut(s)	593, 815, 1123, 1777, 1799, 1805
ApoI	RAATTY	6 cut(s)	7, 38, 1385, 1438, 1840, 2168
ArsI	GACNNNNNNTTYG	4 cut(s)	474, 506, 2168, 2200
AspLEI	GCGC	2 cut(s)	815, 1964
AspS9I	GGNCC	4 cut(s)	196, 822, 1059, 1332
AsuHPI	GGTGA	4 cut(s)	16, 202, 647, 702
AvaI	CYCGRG	2 cut(s)	883, 1127
AvaII	GGWCC	4 cut(s)	196, 822, 1059, 1332
AxyI	CCTNAGG	1 cut(s)	2066
BaeGI	GKGCMC	1 cut(s)	1313
BalI	TGGCCA	1 cut(s)	1223
BanII	GRGCYC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	131
BbrPI	CACGTG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	4 cut(s)	310, 372, 1313, 2120
BbvI	GCAGC	6 cut(s)	605, 802, 1110, 1789, 1811, 1817
BccI	CCATC	9 cut(s)	651, 694, 1004, 1343, 1356, 1637, 1761, 1888, 2225
BcgI	CGANNNNNNTGC	2 cut(s)	1960, 1994
BciT130I	CCWGG	2 cut(s)	88, 2010
BclI	TGATCA	1 cut(s)	1407
BcoDI	GTCTC	2 cut(s)	305, 1815
BfaI	CTAG	4 cut(s)	599, 630, 819, 1425
BfmI	CTRYAG	2 cut(s)	852, 2286
BfoI	RGCGCY	2 cut(s)	816, 1965
BfuAI	ACCTGC	1 cut(s)	689
BisI	GCNGC	7 cut(s)	594, 816, 1124, 1778, 1800, 1803, 1806
BlsI	GCNGC	7 cut(s)	595, 817, 1125, 1779, 1801, 1804, 1807
BmcAI	AGTACT	1 cut(s)	897
Bme1390I	CCNGG	2 cut(s)	88, 2010
Bme18I	GGWCC	4 cut(s)	196, 822, 1059, 1332
BmeT110I	CYCGRG	2 cut(s)	883, 1127
BmgT120I	GGNCC	4 cut(s)	196, 822, 1059, 1332
BmiI	GGNNCC	3 cut(s)	190, 1060, 1061
BmrFI	CCNGG	2 cut(s)	88, 2010
BmsI	GCATC	6 cut(s)	249, 346, 376, 838, 1093, 1945
BoxI	GACNNNNGTC	1 cut(s)	738
BpiI	GAAGAC	1 cut(s)	95
BplI	GAGNNNNNCTC	5 cut(s)	297, 329, 892, 924, 2345
BpmI	CTGGAG	2 cut(s)	2036, 2134
BpuEI	CTTGAG	2 cut(s)	1471, 1890
BsaAI	YACGTR	2 cut(s)	95, 144
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	4 cut(s)	167, 192, 1053, 2008
BsaXI	ACNNNNNCTCC	2 cut(s)	1756, 1786
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 340, 1661, 2314
Bse1I	ACTGG	4 cut(s)	1191, 2021, 2102, 2117
Bse21I	CCTNAGG	1 cut(s)	2066
Bse3DI	GCAATG	3 cut(s)	82, 1605, 2191
BseBI	CCWGG	2 cut(s)	88, 2010
BseDI	CCNNGG	4 cut(s)	167, 192, 1053, 2008
BseLI	CCNNNNNNNGG	4 cut(s)	185, 340, 1661, 2314
BseMI	GCAATG	3 cut(s)	82, 1605, 2191
BseMII	CTCAG	2 cut(s)	890, 1053
BseNI	ACTGG	4 cut(s)	1191, 2021, 2102, 2117
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	1313
BseXI	GCAGC	6 cut(s)	605, 802, 1110, 1789, 1811, 1817
BseYI	CCCAGC	1 cut(s)	180
BsgI	GTGCAG	2 cut(s)	481, 1938
Bsh1285I	CGRYCG	1 cut(s)	1461
BshFI	GGCC	3 cut(s)	1223, 1414, 2284
BsiEI	CGRYCG	1 cut(s)	1461
BsiHKAI	GWGCWC	4 cut(s)	310, 372, 1313, 2120
BsiHKCI	CYCGRG	2 cut(s)	883, 1127
BsiSI	CCGG	1 cut(s)	2162
BslFI	GGGAC	5 cut(s)	476, 491, 1072, 1661, 2027
BslI	CCNNNNNNNGG	4 cut(s)	185, 340, 1661, 2314
BsmAI	GTCTC	2 cut(s)	305, 1815
BsmBI	CGTCTC	1 cut(s)	1815
BsmFI	GGGAC	5 cut(s)	476, 491, 1072, 1661, 2027
BsmI	GAATGC	1 cut(s)	2008
BsnI	GGCC	3 cut(s)	1223, 1414, 2284
BsoBI	CYCGRG	2 cut(s)	883, 1127
Bsp1286I	GDGCHC	4 cut(s)	310, 372, 1313, 2120
Bsp143I	GATC	7 cut(s)	266, 523, 902, 940, 1407, 1458, 1759
BspACI	CCGC	2 cut(s)	864, 1802
BspANI	GGCC	3 cut(s)	1223, 1414, 2284
BspCNI	CTCAG	2 cut(s)	891, 1052
BspHI	TCATGA	1 cut(s)	1093
BspLI	GGNNCC	3 cut(s)	190, 1060, 1061
BspMI	ACCTGC	1 cut(s)	689
BspPI	GGATC	2 cut(s)	261, 897
BspQI	GCTCTTC	1 cut(s)	628
BsrDI	GCAATG	3 cut(s)	82, 1605, 2191
BsrI	ACTGG	4 cut(s)	1191, 2021, 2102, 2117
BssECI	CCNNGG	4 cut(s)	167, 192, 1053, 2008
BssMI	GATC	7 cut(s)	266, 523, 902, 940, 1407, 1458, 1759
BssNAI	GTATAC	1 cut(s)	445
BssNI	GRCGYC	1 cut(s)	287
BssSI	CACGAG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	1053
Bst1107I	GTATAC	1 cut(s)	445
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	2 cut(s)	88, 2010
Bst4CI	ACNGT	4 cut(s)	214, 374, 730, 1315
Bst6I	CTCTTC	4 cut(s)	346, 628, 1317, 1722
BstACI	GRCGYC	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	1697
BstBAI	YACGTR	2 cut(s)	95, 144
BstC8I	GCNNGC	4 cut(s)	1587, 1656, 1797, 2081
BstDEI	CTNAG	4 cut(s)	899, 1039, 1631, 2066
BstH2I	RGCGCY	2 cut(s)	816, 1965
BstHHI	GCGC	2 cut(s)	815, 1964
BstKTI	GATC	7 cut(s)	269, 526, 905, 943, 1410, 1461, 1762
BstMAI	GTCTC	2 cut(s)	305, 1815
BstMBI	GATC	7 cut(s)	266, 523, 902, 940, 1407, 1458, 1759
BstMCI	CGRYCG	1 cut(s)	1461
BstMWI	GCNNNNNNNGC	7 cut(s)	599, 1595, 1697, 1805, 1961, 1968, 2085
BstNI	CCWGG	2 cut(s)	88, 2010
BstNSI	RCATGY	5 cut(s)	1492, 1589, 1654, 1799, 2138
BstPAI	GACNNNNGTC	1 cut(s)	738
BstSCI	CCNGG	2 cut(s)	86, 2008
BstSFI	CTRYAG	2 cut(s)	852, 2286
BstSLI	GKGCMC	1 cut(s)	1313
BstV1I	GCAGC	6 cut(s)	605, 802, 1110, 1789, 1811, 1817
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	902
BstXI	CCANNNNNNTGG	2 cut(s)	913, 2016
BstYI	RGATCY	1 cut(s)	902
BstZ17I	GTATAC	1 cut(s)	445
Bsu36I	CCTNAGG	1 cut(s)	2066
BsuRI	GGCC	3 cut(s)	1223, 1414, 2284
BtsI	GCAGTG	1 cut(s)	1616
BtsIMutI	CAGTG	5 cut(s)	370, 735, 1616, 1971, 2095
BveI	ACCTGC	1 cut(s)	689
Cac8I	GCNNGC	4 cut(s)	1587, 1656, 1797, 2081
CciI	TCATGA	1 cut(s)	1093
CfoI	GCGC	2 cut(s)	815, 1964
Cfr13I	GGNCC	4 cut(s)	196, 822, 1059, 1332
CseI	GACGC	3 cut(s)	295, 1509, 1797
Csp6I	GTAC	5 cut(s)	172, 896, 1111, 1228, 2357
CviAII	CATG	9 cut(s)	938, 1094, 1358, 1489, 1586, 1651, 1796, 1987, 2135
CviQI	GTAC	5 cut(s)	172, 896, 1111, 1228, 2357
DdeI	CTNAG	4 cut(s)	899, 1039, 1631, 2066
DpnI	GATC	7 cut(s)	268, 525, 904, 942, 1409, 1460, 1761
DpnII	GATC	7 cut(s)	266, 523, 902, 940, 1407, 1458, 1759
DraI	TTTAAA	1 cut(s)	1482
EaeI	YGGCCR	1 cut(s)	1221
Eam1104I	CTCTTC	4 cut(s)	346, 628, 1317, 1722
EarI	CTCTTC	4 cut(s)	346, 628, 1317, 1722
Ecl136II	GAGCTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	1053
Eco24I	GRGCYC	1 cut(s)	310
Eco47I	GGWCC	4 cut(s)	196, 822, 1059, 1332
Eco47III	AGCGCT	1 cut(s)	814
Eco53kI	GAGCTC	1 cut(s)	308
Eco57I	CTGAAG	3 cut(s)	1091, 1500, 1557
Eco72I	CACGTG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	2066
Eco88I	CYCGRG	2 cut(s)	883, 1127
EcoICRI	GAGCTC	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	1059
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	86, 2008
EcoT14I	CCWWGG	1 cut(s)	1053
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	1053
Esp3I	CGTCTC	1 cut(s)	1815
FaeI	CATG	9 cut(s)	941, 1097, 1361, 1492, 1589, 1654, 1799, 1990, 2138
FalI	AAGNNNNNCTT	4 cut(s)	1950, 1982, 2068, 2100
FaqI	GGGAC	5 cut(s)	476, 491, 1072, 1661, 2027
FatI	CATG	9 cut(s)	937, 1093, 1357, 1488, 1585, 1650, 1795, 1986, 2134
FauI	CCCGC	1 cut(s)	857
FauNDI	CATATG	1 cut(s)	1349
FbaI	TGATCA	1 cut(s)	1407
FblI	GTMKAC	2 cut(s)	444, 1528
Fnu4HI	GCNGC	7 cut(s)	594, 816, 1124, 1778, 1800, 1803, 1806
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	7 cut(s)	594, 816, 1124, 1778, 1800, 1803, 1806
FspBI	CTAG	4 cut(s)	599, 630, 819, 1425
GlaI	GCGC	2 cut(s)	814, 1963
GluI	GCNGC	7 cut(s)	594, 816, 1124, 1778, 1800, 1803, 1806
GsaI	CCCAGC	1 cut(s)	184
GsuI	CTGGAG	2 cut(s)	2036, 2134
HaeII	RGCGCY	2 cut(s)	816, 1965
HaeIII	GGCC	3 cut(s)	1223, 1414, 2284
HapII	CCGG	1 cut(s)	2162
HgaI	GACGC	3 cut(s)	295, 1509, 1797
HhaI	GCGC	2 cut(s)	815, 1964
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	9 cut(s)	941, 1097, 1361, 1492, 1589, 1654, 1799, 1990, 2138
Hin6I	GCGC	2 cut(s)	813, 1962
HinP1I	GCGC	2 cut(s)	813, 1962
HincII	GTYRAC	2 cut(s)	422, 611
HindII	GTYRAC	2 cut(s)	422, 611
HinfI	GANTC	6 cut(s)	280, 1130, 1465, 1853, 2297, 2321
HpaII	CCGG	1 cut(s)	2162
HphI	GGTGA	4 cut(s)	16, 202, 647, 702
Hpy166II	GTNNAC	9 cut(s)	331, 422, 445, 611, 733, 1295, 1311, 1529, 2243
Hpy188I	TCNGA	7 cut(s)	285, 305, 1009, 1071, 1764, 2278, 2365
Hpy8I	GTNNAC	9 cut(s)	331, 422, 445, 611, 733, 1295, 1311, 1529, 2243
HpyAV	CCTTC	7 cut(s)	258, 394, 717, 1392, 1670, 1830, 1986
HpyCH4III	ACNGT	4 cut(s)	214, 374, 730, 1315
HpyCH4IV	ACGT	2 cut(s)	94, 143
HpyF10VI	GCNNNNNNNGC	7 cut(s)	599, 1595, 1697, 1805, 1961, 1968, 2085
HpyF3I	CTNAG	4 cut(s)	899, 1039, 1631, 2066
HpySE526I	ACGT	2 cut(s)	94, 143
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	9 cut(s)	941, 1097, 1361, 1492, 1589, 1654, 1799, 1990, 2138
HspAI	GCGC	2 cut(s)	813, 1962
KflI	GGGWCCC	1 cut(s)	1059
Ksp22I	TGATCA	1 cut(s)	1407
Kzo9I	GATC	7 cut(s)	266, 523, 902, 940, 1407, 1458, 1759
LguI	GCTCTTC	1 cut(s)	628
LmnI	GCTCC	5 cut(s)	188, 313, 367, 1111, 2115
Lsp1109I	GCAGC	6 cut(s)	605, 802, 1110, 1789, 1811, 1817
LweI	GCATC	6 cut(s)	249, 346, 376, 838, 1093, 1945
MaeI	CTAG	4 cut(s)	599, 630, 819, 1425
MaeII	ACGT	2 cut(s)	94, 143
MalI	GATC	7 cut(s)	268, 525, 904, 942, 1409, 1460, 1761
MboI	GATC	7 cut(s)	266, 523, 902, 940, 1407, 1458, 1759
MflI	RGATCY	1 cut(s)	902
MhlI	GDGCHC	4 cut(s)	310, 372, 1313, 2120
MlsI	TGGCCA	1 cut(s)	1223
MluNI	TGGCCA	1 cut(s)	1223
MlyI	GAGTC	1 cut(s)	1139
MmeI	TCCRAC	5 cut(s)	140, 894, 1260, 2087, 2274
Mox20I	TGGCCA	1 cut(s)	1223
MscI	TGGCCA	1 cut(s)	1223
MseI	TTAA	9 cut(s)	533, 542, 1269, 1481, 1551, 1623, 1815, 1889, 2075
MslI	CAYNNNNRTG	2 cut(s)	97, 1098
Msp20I	TGGCCA	1 cut(s)	1223
MspA1I	CMGCKG	1 cut(s)	1802
MspI	CCGG	1 cut(s)	2162
MspR9I	CCNGG	2 cut(s)	88, 2010
Mva1269I	GAATGC	1 cut(s)	2008
MvaI	CCWGG	2 cut(s)	88, 2010
MwoI	GCNNNNNNNGC	7 cut(s)	599, 1595, 1697, 1805, 1961, 1968, 2085
NdeI	CATATG	1 cut(s)	1349
NdeII	GATC	7 cut(s)	266, 523, 902, 940, 1407, 1458, 1759
NlaIII	CATG	9 cut(s)	941, 1097, 1361, 1492, 1589, 1654, 1799, 1990, 2138
NlaIV	GGNNCC	3 cut(s)	190, 1060, 1061
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	7 cut(s)	45, 79, 128, 635, 1023, 1432, 1600
NspI	RCATGY	5 cut(s)	1492, 1589, 1654, 1799, 2138
PaeI	GCATGC	2 cut(s)	1589, 1799
PaeR7I	CTCGAG	1 cut(s)	1127
PagI	TCATGA	1 cut(s)	1093
PaqCI	CACCTGC	1 cut(s)	689
PciI	ACATGT	1 cut(s)	1488
PciSI	GCTCTTC	1 cut(s)	628
PctI	GAATGC	1 cut(s)	2008
PfeI	GAWTC	5 cut(s)	280, 1465, 1853, 2297, 2321
PflMI	CCANNNNNTGG	1 cut(s)	340
PkrI	GCNGC	7 cut(s)	595, 817, 1125, 1779, 1801, 1804, 1807
Ple19I	CGATCG	1 cut(s)	1461
PleI	GAGTC	1 cut(s)	1138
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	1138
Ppu21I	YACGTR	2 cut(s)	95, 144
PpuMI	RGGWCCY	1 cut(s)	1059
PscI	ACATGT	1 cut(s)	1488
PshAI	GACNNNNGTC	1 cut(s)	738
PsiI	TTATAA	1 cut(s)	1175
Psp124BI	GAGCTC	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	1059
Psp6I	CCWGG	2 cut(s)	86, 2008
PspCI	CACGTG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	180
PspGI	CCWGG	2 cut(s)	86, 2008
PspN4I	GGNNCC	3 cut(s)	190, 1060, 1061
PspPI	GGNCC	4 cut(s)	196, 822, 1059, 1332
PspPPI	RGGWCCY	1 cut(s)	1059
PspXI	VCTCGAGB	1 cut(s)	1127
PsuI	RGATCY	1 cut(s)	902
PvuI	CGATCG	1 cut(s)	1461
RsaI	GTAC	5 cut(s)	173, 897, 1112, 1229, 2358
RsaNI	GTAC	5 cut(s)	172, 896, 1111, 1228, 2357
RseI	CAYNNNNRTG	2 cut(s)	97, 1098
SacI	GAGCTC	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	628
SaqAI	TTAA	9 cut(s)	533, 542, 1269, 1481, 1551, 1623, 1815, 1889, 2075
SatI	GCNGC	7 cut(s)	594, 816, 1124, 1778, 1800, 1803, 1806
Sau3AI	GATC	7 cut(s)	266, 523, 902, 940, 1407, 1458, 1759
Sau96I	GGNCC	4 cut(s)	196, 822, 1059, 1332
ScaI	AGTACT	1 cut(s)	897
SchI	GAGTC	1 cut(s)	1139
ScrFI	CCNGG	2 cut(s)	88, 2010
SduI	GDGCHC	4 cut(s)	310, 372, 1313, 2120
SfaNI	GCATC	6 cut(s)	249, 346, 376, 838, 1093, 1945
SfcI	CTRYAG	2 cut(s)	852, 2286
Sfr274I	CTCGAG	1 cut(s)	1127
SinI	GGWCC	4 cut(s)	196, 822, 1059, 1332
SlaI	CTCGAG	1 cut(s)	1127
SmiMI	CAYNNNNRTG	2 cut(s)	97, 1098
SmlI	CTYRAG	3 cut(s)	1127, 1450, 1905
SmoI	CTYRAG	3 cut(s)	1127, 1450, 1905
SphI	GCATGC	2 cut(s)	1589, 1799
SsiI	CCGC	2 cut(s)	864, 1802
SspMI	CTAG	4 cut(s)	599, 630, 819, 1425
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	86, 2008
StyI	CCWWGG	1 cut(s)	1053
TaaI	ACNGT	4 cut(s)	214, 374, 730, 1315
TaiI	ACGT	2 cut(s)	97, 146
TaqI	TCGA	6 cut(s)	346, 384, 1128, 1457, 1641, 2256
TatI	WGTACW	2 cut(s)	895, 1227
TauI	GCSGC	1 cut(s)	1805
TfiI	GAWTC	5 cut(s)	280, 1465, 1853, 2297, 2321
Tru1I	TTAA	9 cut(s)	533, 542, 1269, 1481, 1551, 1623, 1815, 1889, 2075
Tru9I	TTAA	9 cut(s)	533, 542, 1269, 1481, 1551, 1623, 1815, 1889, 2075
TscAI	CASTG	5 cut(s)	377, 735, 1623, 1978, 2102
TseFI	GTSAC	7 cut(s)	45, 79, 128, 635, 1023, 1432, 1600
TseI	GCWGC	6 cut(s)	593, 815, 1123, 1777, 1799, 1805
Tsp45I	GTSAC	7 cut(s)	45, 79, 128, 635, 1023, 1432, 1600
TspGWI	ACGGA	4 cut(s)	233, 814, 1098, 1193
TspRI	CASTG	5 cut(s)	377, 735, 1623, 1978, 2102
Van91I	CCANNNNNTGG	1 cut(s)	340
VneI	GTGCAC	1 cut(s)	1309
VpaK11BI	GGWCC	4 cut(s)	196, 822, 1059, 1332
XapI	RAATTY	6 cut(s)	7, 38, 1385, 1438, 1840, 2168
XceI	RCATGY	5 cut(s)	1492, 1589, 1654, 1799, 2138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2016
XhoI	CTCGAG	1 cut(s)	1127
XmiI	GTMKAC	2 cut(s)	444, 1528
XspI	CTAG	4 cut(s)	599, 630, 819, 1425
ZrmI	AGTACT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.