Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012869

Physical Location & Seq

Genomic Coordinates Forward (+)

26841952 .. 26843626

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1177200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCGTACGCTGAGTGCTGCCTGCGCATCCTATCCTCTATGCCGGATTGTTTCGTTTGAATCGTGTCGTCAAGCATCGGATAAGTTACTGTTTCCTTGCAATGTGAGAGAGCAGCTTGCCAAAGCAAGAAGGATGCATAAGGGATATCGACCCAAGGCTGGCTTTTGGGGATTCAATCCATTAAATCCAGTGAACTTGTTTAGAAATATTTTAAACAACACCACCACACAAGTAGTAGAATCACCGTCCACGCTCCCAGAAGAGGAGGAAGACGAAGAACCTCTGCCTCAAGAATTAGTTCTCATTCAGAGGAGTGGACCGGATGGAACACTTGAAGAAATAATATTTTCTGCTGGTGGAGATATTGATGTGTACGATCTTCAAGCCCCTTGTGATAAGGTAGGTTGGCCTCGGAGGCCGCTGTCGAAACTAGCTGCATCTTTGAAAAATAGCTACTTGGTTGCCACATTGCATTCAGTTTGGAAATCACCTGGAACACGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10

Protein Analysis

169

Amino Acids

18.78

Weight (kDa)

7.62

Isoelectric Point (pI)

63.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32070 AT1G32070 AT1G32070
fragaria_vesca	FvH4_6g09480
malus_domestica	MD04G1177200.v1.1 MD04G1177300.v1.1 MD12G1192400.v1.1
prunus_persica	Prupe.6G296900_v2.0.a1 Prupe.6G297300_v2.0.a1
pyrus_communis	pycom12g17940
rosa_chinensis	RchiOBHm_Chr3g0460061
rosa_laevigata	RLG00000025047
rosa_multiflora	Rmu_sc0021757.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419880
rosa_samantha	Rh3AG097600 Rh3BG100700 Rh3CG102800
rosa_wichuraiana	Rw3G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	25
AciI	CCGC	1 cut(s)	419
AfaI	GTAC	3 cut(s)	7, 374, 502
AfiI	CCNNNNNNNGG	2 cut(s)	158, 262
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	5 cut(s)	59, 175, 335, 383, 445
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	3 cut(s)	115, 434, 453
AluI	AGCT	3 cut(s)	115, 434, 453
AoxI	GGCC	2 cut(s)	407, 416
ApeKI	GCWGC	3 cut(s)	17, 112, 434
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	234, 480
AvaII	GGWCC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	4, 124, 421
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	492
BfaI	CTAG	1 cut(s)	431
BglI	GCCNNNNNGGC	1 cut(s)	415
BisI	GCNGC	4 cut(s)	18, 113, 419, 435
BlsI	GCNGC	4 cut(s)	19, 114, 420, 436
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	4 cut(s)	35, 83, 123, 446
BpiI	GAAGAC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	153, 410
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 262
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	2 cut(s)	106, 467
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	153, 410
BseGI	GGATG	3 cut(s)	26, 138, 328
BseLI	CCNNNNNNNGG	2 cut(s)	158, 262
BseMI	GCAATG	2 cut(s)	106, 467
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	2 cut(s)	278, 325
BseXI	GCAGC	3 cut(s)	4, 124, 421
BshFI	GGCC	2 cut(s)	409, 418
BsiSI	CCGG	2 cut(s)	43, 320
BsiWI	CGTACG	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	158, 262
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	409, 418
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	2 cut(s)	409, 418
BsrDI	GCAATG	2 cut(s)	106, 467
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	153, 410
BssMI	GATC	1 cut(s)	376
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	90, 246
Bst6I	CTCTTC	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	22, 117, 160
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	3 cut(s)	26, 138, 328
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 415
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	490
BstV1I	GCAGC	3 cut(s)	4, 124, 421
BstV2I	GAAGAC	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	409, 418
BtsCI	GGATG	3 cut(s)	26, 138, 328
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	3 cut(s)	22, 117, 160
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	317
Csp6I	GTAC	3 cut(s)	6, 373, 501
CviJI	RGCY	8 cut(s)	115, 158, 162, 386, 409, 418, 434, 453
CviKI_1	RGCY	8 cut(s)	115, 158, 162, 386, 409, 418, 434, 453
CviQI	GTAC	3 cut(s)	6, 373, 501
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
DraI	TTTAAA	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	153
FaiI	YATR	3 cut(s)	40, 138, 505
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
Fnu4HI	GCNGC	4 cut(s)	18, 113, 419, 435
FokI	GGATG	3 cut(s)	13, 145, 335
Fsp4HI	GCNGC	4 cut(s)	18, 113, 419, 435
FspBI	CTAG	1 cut(s)	431
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	4 cut(s)	18, 113, 419, 435
HaeIII	GGCC	2 cut(s)	409, 418
HapII	CCGG	2 cut(s)	43, 320
HhaI	GCGC	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	3 cut(s)	59, 171, 239
HpaII	CCGG	2 cut(s)	43, 320
HphI	GGTGA	2 cut(s)	234, 480
Hpy166II	GTNNAC	4 cut(s)	193, 249, 317, 373
Hpy188I	TCNGA	3 cut(s)	79, 309, 414
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	4 cut(s)	193, 249, 317, 373
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	2 cut(s)	90, 246
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	4 cut(s)	99, 136, 437, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 415
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	499
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	8 cut(s)	34, 56, 144, 201, 270, 333, 339, 477
Lsp1109I	GCAGC	3 cut(s)	4, 124, 421
LweI	GCATC	4 cut(s)	35, 83, 123, 446
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	5 cut(s)	272, 281, 287, 347, 371
MluCI	AATT	1 cut(s)	293
MnlI	CCTC	8 cut(s)	45, 256, 259, 291, 297, 303, 408, 420
Mph1103I	ATGCAT	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	2 cut(s)	182, 212
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	2 cut(s)	43, 320
MspR9I	CCNGG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	23, 415
NdeII	GATC	1 cut(s)	376
NsbI	TGCGCA	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PctI	GAATGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	59, 171, 239
Pfl23II	CGTACG	1 cut(s)	5
PkrI	GCNGC	4 cut(s)	19, 114, 420, 436
Ppu21I	YACGTR	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspLI	CGTACG	1 cut(s)	5
PspPI	GGNCC	1 cut(s)	317
RsaI	GTAC	3 cut(s)	7, 374, 502
RsaNI	GTAC	3 cut(s)	6, 373, 501
SaqAI	TTAA	2 cut(s)	182, 212
SatI	GCNGC	4 cut(s)	18, 113, 419, 435
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	492
SetI	ASST	8 cut(s)	117, 283, 402, 406, 436, 455, 493, 502
SfaNI	GCATC	4 cut(s)	35, 83, 123, 446
SfiI	GGCCNNNNNGGCC	1 cut(s)	415
SinI	GGWCC	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	1 cut(s)	419
SspI	AATATT	2 cut(s)	208, 345
SspMI	CTAG	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	90, 246
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	2 cut(s)	148, 425
TasI	AATT	1 cut(s)	293
TauI	GCSGC	1 cut(s)	421
TfiI	GAWTC	3 cut(s)	59, 171, 239
Tru1I	TTAA	2 cut(s)	182, 212
Tru9I	TTAA	2 cut(s)	182, 212
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	3 cut(s)	17, 112, 434
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.