Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0012869

Physical Location & Seq

Genomic Coordinates Forward (+)

41239437 .. 41243008

Gene Structure 3572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCAGAAAGTTTGCTAGAGAACCCAAGTTGGTTTTGCCGCTGTGGTCTTCCCAAGAGAAAGGAGTGGTTTCAGAAGGCAAGCAATATATCCATCCACACCAGCGCAGTTACAGTCACACAGCTCCACTGCAACAACATGCCCACTACACTCAGAGCCGTAGCTTCCTATCCTCTGTGCCCTATTGCTTCCTTTGATTTGGGTCGTCAAGTATCGAAGAAGTTATTGTTTCCTTGCAATTTAAGCCACAGCCTTATTAAAGGAAGCAGAATTCATAAGACATATCGACTCAAGGCTGGCTTTTGGGAATCGATTAAATCTGGTATCTTAAGCAACAACACAACACAAGTAGTGGAACCACCATCCACACTTCCAGAAGAGGAAGAACCCCTTCCTGAAGAGTTAGTTCTCATTGAAAAGACCGAACCAGATGGAACAGTTGAAGAAATAATATTTTCTTCTGGTGGAGATGTTGATGTGTATGATCTTCAAGCCCTCTGTGATAAGGTAGGCTGGCCTCGCAGGCCACTTTCAAAACTGGCTGCAGCTTTGAAAAATAGCTACATGGTAGCCACATTACATTCGGTTCGGAAATCGCCTGGATCAGACGGGAATGACCAGAAGAAGCTAATTGGCTTGGCGCGAGCTACATCTGACCATGCGTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCTAGCTATCAGGGACAAGGCCTTGGAAAGGCCCTTGTTGAAAAGATTATAAGGGCTCTTCTGCAGAGGGACATTGGCAATATTTCGCTTTTTGCAGATAGTCAAGTCGTGGACTTCTATCAAAATTTGGGTTTTGAAGCTGACCCGGAGGGCATCAAAGGCATGTTTTGGTACCCAAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10

Protein Analysis

293

Amino Acids

32.55

Weight (kDa)

6.6

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	205 - 277	4.1e-13	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	206 - 280	4.8e-11	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	207 - 278	1.7e-11	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32070 AT1G32070 AT1G32070
fragaria_vesca	FvH4_6g09480
malus_domestica	MD04G1177200.v1.1 MD04G1177300.v1.1 MD12G1192400.v1.1
prunus_persica	Prupe.6G296900_v2.0.a1 Prupe.6G297300_v2.0.a1
pyrus_communis	pycom12g17940
rosa_chinensis	RchiOBHm_Chr3g0460061
rosa_laevigata	RLG00000025047
rosa_multiflora	Rmu_sc0021757.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419880
rosa_samantha	Rh3AG097600 Rh3BG100700 Rh3CG102800
rosa_wichuraiana	Rw3G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	746
Acc65I	GGTACC	1 cut(s)	867
AccB1I	GGYRCC	1 cut(s)	867
AccB7I	CCANNNNNTGG	1 cut(s)	678
AccII	CGCG	1 cut(s)	643
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	2 cut(s)	610, 689
AcsI	RAATTY	2 cut(s)	270, 820
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	869
AfiI	CCNNNNNNNGG	2 cut(s)	678, 724
AflII	CTTAAG	1 cut(s)	328
AgsI	TTSAA	8 cut(s)	416, 443, 491, 534, 553, 667, 737, 833
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	8 cut(s)	124, 164, 548, 561, 628, 647, 702, 836
AluI	AGCT	8 cut(s)	124, 164, 548, 561, 628, 647, 702, 836
AlwI	GGATC	2 cut(s)	610, 689
AoxI	GGCC	4 cut(s)	515, 524, 715, 726
ApeKI	GCWGC	2 cut(s)	542, 545
ApoI	RAATTY	2 cut(s)	270, 820
Asp700I	GAANNNNTTC	1 cut(s)	390
Asp718I	GGTACC	1 cut(s)	867
AspLEI	GCGC	2 cut(s)	107, 643
AspS9I	GGNCC	1 cut(s)	727
AsuC2I	CCSGG	1 cut(s)	842
BaeGI	GKGCMC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	867
BanII	GRGCYC	1 cut(s)	754
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	529, 557
BccI	CCATC	3 cut(s)	101, 370, 425
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	842
BfaI	CTAG	3 cut(s)	17, 689, 699
BfmI	CTRYAG	2 cut(s)	543, 758
BfrI	CTTAAG	1 cut(s)	328
BglI	GCCNNNNNGGC	1 cut(s)	523
BisI	GCNGC	3 cut(s)	40, 543, 546
BlsI	GCNGC	3 cut(s)	41, 544, 547
Bme1390I	CCNGG	2 cut(s)	600, 842
BmgT120I	GGNCC	1 cut(s)	727
BmiI	GGNNCC	2 cut(s)	357, 869
BmrFI	CCNGG	2 cut(s)	600, 842
BmsI	GCATC	1 cut(s)	858
BpiI	GAAGAC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	842
Bsa29I	ATCGAT	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	2 cut(s)	678, 724
Bse1I	ACTGG	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	600
BseCI	ATCGAT	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	718
BseGI	GGATG	3 cut(s)	93, 362, 688
BseLI	CCNNNNNNNGG	2 cut(s)	678, 724
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	543
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	529, 557
Bsh1236I	CGCG	1 cut(s)	643
BshFI	GGCC	4 cut(s)	517, 526, 717, 728
BshNI	GGYRCC	1 cut(s)	867
BshVI	ATCGAT	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	842
BslFI	GGGAC	2 cut(s)	723, 779
BslI	CCNNNNNNNGG	2 cut(s)	678, 724
BsmFI	GGGAC	2 cut(s)	723, 779
BsnI	GGCC	4 cut(s)	517, 526, 717, 728
Bsp1286I	GDGCHC	2 cut(s)	182, 754
Bsp143I	GATC	3 cut(s)	484, 602, 694
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	4 cut(s)	517, 526, 717, 728
BspCNI	CTCAG	1 cut(s)	165
BspDI	ATCGAT	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	357, 869
BspMAI	CTGCAG	2 cut(s)	547, 762
BspPI	GGATC	2 cut(s)	610, 689
BspQI	GCTCTTC	1 cut(s)	759
BspT107I	GGYRCC	1 cut(s)	867
BspTI	CTTAAG	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	1 cut(s)	718
BssMI	GATC	3 cut(s)	484, 602, 694
BssT1I	CCWWGG	1 cut(s)	718
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	115, 439
Bst6I	CTCTTC	3 cut(s)	372, 393, 759
BstAFI	CTTAAG	1 cut(s)	328
BstC8I	GCNNGC	5 cut(s)	82, 298, 515, 524, 645
BstDEI	CTNAG	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	722
BstF5I	GGATG	3 cut(s)	93, 362, 688
BstFNI	CGCG	1 cut(s)	643
BstHHI	GCGC	2 cut(s)	107, 643
BstKTI	GATC	3 cut(s)	487, 605, 697
BstMBI	GATC	3 cut(s)	484, 602, 694
BstMWI	GCNNNNNNNGC	5 cut(s)	243, 519, 523, 668, 855
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	2 cut(s)	142, 862
BstSCI	CCNGG	2 cut(s)	598, 840
BstSFI	CTRYAG	2 cut(s)	543, 758
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	1 cut(s)	643
BstV1I	GCAGC	2 cut(s)	529, 557
BstV2I	GAAGAC	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	311
BsuRI	GGCC	4 cut(s)	517, 526, 717, 728
BsuTUI	ATCGAT	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	93, 362, 688
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	5 cut(s)	82, 298, 515, 524, 645
CfoI	GCGC	2 cut(s)	107, 643
Cfr13I	GGNCC	1 cut(s)	727
ClaI	ATCGAT	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	868
CviAII	CATG	4 cut(s)	139, 565, 659, 859
CviQI	GTAC	1 cut(s)	868
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	3 cut(s)	486, 604, 696
DpnII	GATC	3 cut(s)	484, 602, 694
Eam1104I	CTCTTC	3 cut(s)	372, 393, 759
EarI	CTCTTC	3 cut(s)	372, 393, 759
Eco130I	CCWWGG	1 cut(s)	718
Eco147I	AGGCCT	1 cut(s)	717
Eco24I	GRGCYC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	417
EcoNI	CCTNNNNNAGG	1 cut(s)	722
EcoO109I	RGGNCCY	1 cut(s)	727
EcoRI	GAATTC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	718
EcoT38I	GRGCYC	1 cut(s)	754
ErhI	CCWWGG	1 cut(s)	718
FaeI	CATG	4 cut(s)	142, 568, 662, 862
FaiI	YATR	9 cut(s)	89, 140, 276, 283, 483, 566, 660, 746, 860
FalI	AAGNNNNNCTT	4 cut(s)	284, 316, 375, 407
FaqI	GGGAC	2 cut(s)	723, 779
FatI	CATG	4 cut(s)	138, 564, 658, 858
Fnu4HI	GCNGC	3 cut(s)	40, 543, 546
FokI	GGATG	3 cut(s)	80, 349, 695
FriOI	GRGCYC	1 cut(s)	754
Fsp4HI	GCNGC	3 cut(s)	40, 543, 546
FspBI	CTAG	3 cut(s)	17, 689, 699
GlaI	GCGC	2 cut(s)	106, 642
GluI	GCNGC	3 cut(s)	40, 543, 546
HaeIII	GGCC	4 cut(s)	517, 526, 717, 728
HapII	CCGG	1 cut(s)	842
HhaI	GCGC	2 cut(s)	107, 643
Hin1II	CATG	4 cut(s)	142, 568, 662, 862
Hin6I	GCGC	2 cut(s)	105, 641
HinP1I	GCGC	2 cut(s)	105, 641
HinfI	GANTC	2 cut(s)	288, 308
HpaII	CCGG	1 cut(s)	842
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	6 cut(s)	7, 75, 155, 591, 607, 655
Hpy188III	TCNNGA	2 cut(s)	374, 395
Hpy8I	GTNNAC	1 cut(s)	808
HpyAV	CCTTC	2 cut(s)	70, 401
HpyCH4III	ACNGT	2 cut(s)	115, 439
HpyCH4V	TGCA	5 cut(s)	132, 237, 545, 760, 791
HpyF10VI	GCNNNNNNNGC	5 cut(s)	243, 519, 523, 668, 855
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	4 cut(s)	142, 568, 662, 862
HspAI	GCGC	2 cut(s)	105, 641
KpnI	GGTACC	1 cut(s)	871
Kzo9I	GATC	3 cut(s)	484, 602, 694
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	2 cut(s)	529, 557
LweI	GCATC	1 cut(s)	858
MaeI	CTAG	3 cut(s)	17, 689, 699
MaeIII	GTNAC	2 cut(s)	109, 115
MalI	GATC	3 cut(s)	486, 604, 696
MboI	GATC	3 cut(s)	484, 602, 694
MhlI	GDGCHC	2 cut(s)	182, 754
MluCI	AATT	5 cut(s)	238, 270, 630, 675, 820
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	6 cut(s)	183, 373, 506, 528, 756, 838
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	4 cut(s)	242, 258, 315, 329
MspA1I	CMGCKG	1 cut(s)	42
MspCI	CTTAAG	1 cut(s)	328
MspI	CCGG	1 cut(s)	842
MspR9I	CCNGG	2 cut(s)	600, 842
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	643
MwoI	GCNNNNNNNGC	5 cut(s)	243, 519, 523, 668, 855
NciI	CCSGG	1 cut(s)	842
NdeII	GATC	3 cut(s)	484, 602, 694
NlaIII	CATG	4 cut(s)	142, 568, 662, 862
NlaIV	GGNNCC	2 cut(s)	357, 869
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	2 cut(s)	142, 862
PceI	AGGCCT	1 cut(s)	717
PciSI	GCTCTTC	1 cut(s)	759
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	308
PflMI	CCANNNNNTGG	1 cut(s)	678
PkrI	GCNGC	3 cut(s)	41, 544, 547
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PsiI	TTATAA	1 cut(s)	746
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	357, 869
PspPI	GGNCC	1 cut(s)	727
PstI	CTGCAG	2 cut(s)	547, 762
RsaI	GTAC	1 cut(s)	869
RsaNI	GTAC	1 cut(s)	868
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	4 cut(s)	242, 258, 315, 329
SatI	GCNGC	3 cut(s)	40, 543, 546
Sau3AI	GATC	3 cut(s)	484, 602, 694
Sau96I	GGNCC	1 cut(s)	727
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	600, 842
SduI	GDGCHC	2 cut(s)	182, 754
SetI	ASST	9 cut(s)	126, 166, 510, 550, 563, 630, 649, 704, 838
SfaNI	GCATC	1 cut(s)	858
SfcI	CTRYAG	2 cut(s)	543, 758
SfiI	GGCCNNNNNGGCC	1 cut(s)	523
SmlI	CTYRAG	2 cut(s)	290, 328
SmoI	CTYRAG	2 cut(s)	290, 328
Sse9I	AATT	5 cut(s)	238, 270, 630, 675, 820
SseBI	AGGCCT	1 cut(s)	717
SsiI	CCGC	1 cut(s)	40
SspI	AATATT	2 cut(s)	453, 778
SspMI	CTAG	3 cut(s)	17, 689, 699
StuI	AGGCCT	1 cut(s)	717
StyD4I	CCNGG	2 cut(s)	598, 840
StyI	CCWWGG	1 cut(s)	718
TaaI	ACNGT	2 cut(s)	115, 439
TaqI	TCGA	3 cut(s)	215, 286, 311
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	5 cut(s)	238, 270, 630, 675, 820
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	4 cut(s)	242, 258, 315, 329
Tru9I	TTAA	4 cut(s)	242, 258, 315, 329
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	542, 545
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	134
Van91I	CCANNNNNTGG	1 cut(s)	678
Vha464I	CTTAAG	1 cut(s)	328
XagI	CCTNNNNNAGG	1 cut(s)	722
XapI	RAATTY	2 cut(s)	270, 820
XceI	RCATGY	2 cut(s)	142, 862
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	3 cut(s)	17, 689, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.