Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012869

Physical Location & Seq

Genomic Coordinates Forward (+)

20253604 .. 20256120

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17940.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGCATTATAACCAAAGGGCAACATATCCAAAACCAAGAGAGCCAGAGTCACTCGCAAATGCCACAGCTCCCCAGAGCAACACCAACAAGGAAGAAGAAGATGCGTACGCTCGGTGCTGCCTGCGCTTCCTATTCTCTATGCCGGATTGTTTCGTTTGAATCGTGCCGTCAAGCATCGGATAAGTTATTGTTTCCTTGCAATGTGAGAGAGCAGCTTGCCAAAGCAAGAAGGATGCATAAGGGATACCGACTCAAGGCTGGCTTTTGGGAATCCATTAAATCCGGTATTTTAAACAACAACACCGCGCAAGTAGTAGAACCACCCTCCGCGCTCCCAGAAGAGGAAGAAGAAGAACCTCTGCCTCAAGAATTAGTTCTCATTCAGAAGACTGAACCAGATGGAACTGTTGAAGAAATAATATTTTCTTCTGGTGGAGATATTGATGTGTACGATCTTCAAGCCCTTTGTGATAAGGTTGGTTGGCCAAGGAGGCCGCTGTCGAAACTAGCTGCAGCTTTGAAAAATAGCTACTTGGTTGCAACATTACATTCAGTTCGGAAATCACCTGGATCAGATCATGCCTTCAATGCCACAATTTGGGATGTCCTCGTTGATCCTGGCTATCAGGGCCAAGGCCTTGGGAAGGCTCTTGTTGAAAAGATTATACGGGCTCTTTTGCAGAGGGACATCGGAAACATTTCACTCTTTGCAGATAGTCAGGTTGTGGAGTTCTATCAAAATTTGGGTTTTGAACCCGACCCGGAGGGCATCAAAGGCATGTTTTGGTACCCAAAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10

Protein Analysis

268

Amino Acids

29.83

Weight (kDa)

7.63

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32070 AT1G32070 AT1G32070
fragaria_vesca	FvH4_6g09480
malus_domestica	MD04G1177200.v1.1 MD04G1177300.v1.1 MD12G1192400.v1.1
prunus_persica	Prupe.6G296900_v2.0.a1 Prupe.6G297300_v2.0.a1
pyrus_communis	pycom12g17940
rosa_chinensis	RchiOBHm_Chr3g0460061
rosa_laevigata	RLG00000025047
rosa_multiflora	Rmu_sc0021757.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419880
rosa_samantha	Rh3AG097600 Rh3BG100700 Rh3CG102800
rosa_wichuraiana	Rw3G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
Acc65I	GGTACC	1 cut(s)	789
AccB1I	GGYRCC	1 cut(s)	789
AccB7I	CCANNNNNTGG	1 cut(s)	600
AccII	CGCG	2 cut(s)	308, 332
AciI	CCGC	3 cut(s)	306, 330, 497
AclWI	GGATC	2 cut(s)	580, 611
AcoI	YGGCCR	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	742
AfaI	GTAC	3 cut(s)	109, 452, 791
AfiI	CCNNNNNNNGG	4 cut(s)	256, 343, 600, 646
AgsI	TTSAA	7 cut(s)	161, 413, 461, 523, 589, 659, 755
AjnI	CCWGG	2 cut(s)	568, 619
AluBI	AGCT	5 cut(s)	70, 217, 512, 518, 531
AluI	AGCT	5 cut(s)	70, 217, 512, 518, 531
AlwI	GGATC	2 cut(s)	580, 611
AoxI	GGCC	4 cut(s)	485, 494, 631, 637
ApeKI	GCWGC	4 cut(s)	119, 214, 512, 515
ApoI	RAATTY	1 cut(s)	742
Asp700I	GAANNNNTTC	2 cut(s)	375, 700
Asp718I	GGTACC	1 cut(s)	789
AspLEI	GCGC	3 cut(s)	128, 310, 334
AspS9I	GGNCC	1 cut(s)	631
AsuC2I	CCSGG	1 cut(s)	764
AsuHPI	GGTGA	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	789
BanII	GRGCYC	1 cut(s)	676
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	4 cut(s)	106, 226, 499, 527
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	2 cut(s)	570, 621
BciVI	GTATCC	1 cut(s)	239
BcnI	CCSGG	1 cut(s)	764
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	513
BfuI	GTATCC	1 cut(s)	239
BglI	GCCNNNNNGGC	1 cut(s)	493
BisI	GCNGC	5 cut(s)	120, 215, 497, 513, 516
BlsI	GCNGC	5 cut(s)	121, 216, 498, 514, 517
Bme1390I	CCNGG	3 cut(s)	570, 621, 764
BmgT120I	GGNCC	1 cut(s)	631
BmiI	GGNNCC	1 cut(s)	791
BmrFI	CCNGG	3 cut(s)	570, 621, 764
BmsI	GCATC	4 cut(s)	93, 185, 225, 780
BpiI	GAAGAC	1 cut(s)	395
BpuEI	CTTGAG	2 cut(s)	239, 351
BpuMI	CCSGG	1 cut(s)	764
BsaJI	CCNNGG	3 cut(s)	488, 634, 640
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 343, 600, 646
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	570, 621
BseDI	CCNNGG	3 cut(s)	488, 634, 640
BseGI	GGATG	2 cut(s)	240, 610
BseLI	CCNNNNNNNGG	4 cut(s)	256, 343, 600, 646
BseMI	GCAATG	1 cut(s)	208
BseXI	GCAGC	4 cut(s)	106, 226, 499, 527
Bsh1236I	CGCG	2 cut(s)	308, 332
BshFI	GGCC	4 cut(s)	487, 496, 633, 639
BshNI	GGYRCC	1 cut(s)	789
BsiSI	CCGG	3 cut(s)	145, 285, 764
BsiWI	CGTACG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	4 cut(s)	256, 343, 600, 646
BsmFI	GGGAC	1 cut(s)	701
BsnI	GGCC	4 cut(s)	487, 496, 633, 639
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp143I	GATC	4 cut(s)	454, 572, 577, 616
BspACI	CCGC	3 cut(s)	306, 330, 497
BspANI	GGCC	4 cut(s)	487, 496, 633, 639
BspFNI	CGCG	2 cut(s)	308, 332
BspLI	GGNNCC	1 cut(s)	791
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	2 cut(s)	580, 611
BspT107I	GGYRCC	1 cut(s)	789
BsrDI	GCAATG	1 cut(s)	208
BssECI	CCNNGG	3 cut(s)	488, 634, 640
BssMI	GATC	4 cut(s)	454, 572, 577, 616
BssT1I	CCWWGG	3 cut(s)	488, 634, 640
Bst2UI	CCWGG	2 cut(s)	570, 621
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	3 cut(s)	124, 219, 262
BstENI	CCTNNNNNAGG	1 cut(s)	644
BstF5I	GGATG	2 cut(s)	240, 610
BstFNI	CGCG	2 cut(s)	308, 332
BstHHI	GCGC	3 cut(s)	128, 310, 334
BstKTI	GATC	4 cut(s)	457, 575, 580, 619
BstMBI	GATC	4 cut(s)	454, 572, 577, 616
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 493, 590, 630, 777
BstNI	CCWGG	2 cut(s)	570, 621
BstNSI	RCATGY	1 cut(s)	784
BstSCI	CCNGG	3 cut(s)	568, 619, 762
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	2 cut(s)	308, 332
BstV1I	GCAGC	4 cut(s)	106, 226, 499, 527
BstV2I	GAAGAC	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	641
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	4 cut(s)	487, 496, 633, 639
BtsCI	GGATG	2 cut(s)	240, 610
Cac8I	GCNNGC	3 cut(s)	124, 219, 262
CfoI	GCGC	3 cut(s)	128, 310, 334
Cfr13I	GGNCC	1 cut(s)	631
Csp6I	GTAC	3 cut(s)	108, 451, 790
CviAII	CATG	2 cut(s)	581, 781
CviQI	GTAC	3 cut(s)	108, 451, 790
DpnI	GATC	4 cut(s)	456, 574, 579, 618
DpnII	GATC	4 cut(s)	454, 572, 577, 616
DraI	TTTAAA	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	485
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	3 cut(s)	488, 634, 640
Eco147I	AGGCCT	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	676
EcoNI	CCTNNNNNAGG	1 cut(s)	644
EcoRII	CCWGG	2 cut(s)	568, 619
EcoT14I	CCWWGG	3 cut(s)	488, 634, 640
EcoT22I	ATGCAT	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	676
ErhI	CCWWGG	3 cut(s)	488, 634, 640
FaeI	CATG	2 cut(s)	584, 784
FaiI	YATR	7 cut(s)	11, 27, 142, 240, 582, 668, 782
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	2 cut(s)	580, 780
Fnu4HI	GCNGC	5 cut(s)	120, 215, 497, 513, 516
FokI	GGATG	2 cut(s)	247, 617
FriOI	GRGCYC	1 cut(s)	676
Fsp4HI	GCNGC	5 cut(s)	120, 215, 497, 513, 516
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	3 cut(s)	127, 309, 333
GluI	GCNGC	5 cut(s)	120, 215, 497, 513, 516
HaeIII	GGCC	4 cut(s)	487, 496, 633, 639
HapII	CCGG	3 cut(s)	145, 285, 764
HhaI	GCGC	3 cut(s)	128, 310, 334
Hin1II	CATG	2 cut(s)	584, 784
Hin6I	GCGC	3 cut(s)	126, 308, 332
HinP1I	GCGC	3 cut(s)	126, 308, 332
HinfI	GANTC	4 cut(s)	49, 161, 252, 272
HpaII	CCGG	3 cut(s)	145, 285, 764
HphI	GGTGA	1 cut(s)	558
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	5 cut(s)	181, 387, 561, 577, 695
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	3 cut(s)	225, 595, 640
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	6 cut(s)	201, 238, 515, 542, 682, 713
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 493, 590, 630, 777
Hsp92II	CATG	2 cut(s)	584, 784
HspAI	GCGC	3 cut(s)	126, 308, 332
KpnI	GGTACC	1 cut(s)	793
Kzo9I	GATC	4 cut(s)	454, 572, 577, 616
LmnI	GCTCC	2 cut(s)	75, 339
Lsp1109I	GCAGC	4 cut(s)	106, 226, 499, 527
LweI	GCATC	4 cut(s)	93, 185, 225, 780
MaeI	CTAG	1 cut(s)	509
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	4 cut(s)	456, 574, 579, 618
MboI	GATC	4 cut(s)	454, 572, 577, 616
MhlI	GDGCHC	1 cut(s)	676
MlsI	TGGCCA	1 cut(s)	487
MluCI	AATT	3 cut(s)	371, 597, 742
MluNI	TGGCCA	1 cut(s)	487
MlyI	GAGTC	2 cut(s)	58, 246
MnlI	CCTC	8 cut(s)	337, 337, 369, 375, 486, 620, 678, 760
Mox20I	TGGCCA	1 cut(s)	487
Mph1103I	ATGCAT	1 cut(s)	240
MroXI	GAANNNNTTC	2 cut(s)	375, 700
MscI	TGGCCA	1 cut(s)	487
MseI	TTAA	2 cut(s)	279, 293
Msp20I	TGGCCA	1 cut(s)	487
MspA1I	CMGCKG	1 cut(s)	499
MspI	CCGG	3 cut(s)	145, 285, 764
MspR9I	CCNGG	3 cut(s)	570, 621, 764
MvaI	CCWGG	2 cut(s)	570, 621
MvnI	CGCG	2 cut(s)	308, 332
MwoI	GCNNNNNNNGC	5 cut(s)	125, 493, 590, 630, 777
NciI	CCSGG	1 cut(s)	764
NdeII	GATC	4 cut(s)	454, 572, 577, 616
NlaIII	CATG	2 cut(s)	584, 784
NlaIV	GGNNCC	1 cut(s)	791
NmuCI	GTSAC	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	1 cut(s)	784
PceI	AGGCCT	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PdmI	GAANNNNTTC	2 cut(s)	375, 700
PfeI	GAWTC	2 cut(s)	161, 272
Pfl23II	CGTACG	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	600
PkrI	GCNGC	5 cut(s)	121, 216, 498, 514, 517
PleI	GAGTC	2 cut(s)	57, 246
PpsI	GAGTC	2 cut(s)	57, 246
PsiI	TTATAA	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	568, 619
PspGI	CCWGG	2 cut(s)	568, 619
PspLI	CGTACG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	791
PspPI	GGNCC	1 cut(s)	631
PstI	CTGCAG	1 cut(s)	517
RsaI	GTAC	3 cut(s)	109, 452, 791
RsaNI	GTAC	3 cut(s)	108, 451, 790
SaqAI	TTAA	2 cut(s)	279, 293
SatI	GCNGC	5 cut(s)	120, 215, 497, 513, 516
Sau3AI	GATC	4 cut(s)	454, 572, 577, 616
Sau96I	GGNCC	1 cut(s)	631
SchI	GAGTC	2 cut(s)	58, 246
ScrFI	CCNGG	3 cut(s)	570, 621, 764
SduI	GDGCHC	1 cut(s)	676
SetI	ASST	9 cut(s)	72, 219, 361, 480, 514, 520, 533, 571, 726
SfaNI	GCATC	4 cut(s)	93, 185, 225, 780
SfcI	CTRYAG	1 cut(s)	513
SfiI	GGCCNNNNNGGCC	1 cut(s)	493
SmlI	CTYRAG	2 cut(s)	254, 366
SmoI	CTYRAG	2 cut(s)	254, 366
Sse9I	AATT	3 cut(s)	371, 597, 742
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	3 cut(s)	306, 330, 497
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	1 cut(s)	509
StuI	AGGCCT	1 cut(s)	639
StyD4I	CCNGG	3 cut(s)	568, 619, 762
StyI	CCWWGG	3 cut(s)	488, 634, 640
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	503
TasI	AATT	3 cut(s)	371, 597, 742
TauI	GCSGC	1 cut(s)	499
TfiI	GAWTC	2 cut(s)	161, 272
Tru1I	TTAA	2 cut(s)	279, 293
Tru9I	TTAA	2 cut(s)	279, 293
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	4 cut(s)	119, 214, 512, 515
Tsp45I	GTSAC	1 cut(s)	50
Van91I	CCANNNNNTGG	1 cut(s)	600
XagI	CCTNNNNNAGG	1 cut(s)	644
XapI	RAATTY	1 cut(s)	742
XceI	RCATGY	1 cut(s)	784
XmnI	GAANNNNTTC	2 cut(s)	375, 700
XspI	CTAG	1 cut(s)	509
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.