Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0012869

Physical Location & Seq

Genomic Coordinates Reverse (-)

8174690 .. 8177752

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG102800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCCCACTACACTCAGAGCCTTAGCTTCCTATCCTCTGTGCCCTATTGCTTCGTTTGATTTGGGTCGTCAAGTATCGAATAAGTTATTGTTTCCTTGCAATTTAAGCCACAGCCTTGTTAAAGGAAGCAGAATTCACAAGACATATCGACTCAAGGCTGGCTTTTGGGAATCGATTAAATCTGGTATCTTAAGCAACAACACAACACAAGTAGTGGAACCACCATCCACACTTCCAGAAGAGGAAGAACCCCTTCCTGAAGAGTTAGTTCTCATTGAAAAGACCGAACCAGACGGAACAGTTGAAGAAATAATATTTTCTTCTGGTGGAGATGTTGATGTGTATGATCTTCAAGCCCTCTGTGATAAGGTAGGCTGGCCTCGCAGGCCACTTTCAAAACTGGCTGCAGCTTTGAAAAATAGCTACATGGTAGCCACATTACATTCGGTTCGGAAATCGCCTGGATCAGGTACATATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10

Protein Analysis

160

Amino Acids

17.51

Weight (kDa)

6.3

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32070 AT1G32070 AT1G32070
fragaria_vesca	FvH4_6g09480
malus_domestica	MD04G1177200.v1.1 MD04G1177300.v1.1 MD12G1192400.v1.1
prunus_persica	Prupe.6G296900_v2.0.a1 Prupe.6G297300_v2.0.a1
pyrus_communis	pycom12g17940
rosa_chinensis	RchiOBHm_Chr3g0460061
rosa_laevigata	RLG00000025047
rosa_multiflora	Rmu_sc0021757.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419880
rosa_samantha	Rh3AG097600 Rh3BG100700 Rh3CG102800
rosa_wichuraiana	Rw3G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	1 cut(s)	467
AflII	CTTAAG	1 cut(s)	190
AgsI	TTSAA	5 cut(s)	278, 305, 353, 396, 415
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	3 cut(s)	26, 410, 423
AluI	AGCT	3 cut(s)	26, 410, 423
AlwI	GGATC	1 cut(s)	472
AoxI	GGCC	2 cut(s)	377, 386
ApeKI	GCWGC	2 cut(s)	404, 407
ApoI	RAATTY	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	391, 419
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	405
BfrI	CTTAAG	1 cut(s)	190
BglI	GCCNNNNNGGC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	405, 408
BlsI	GCNGC	2 cut(s)	406, 409
Bme1390I	CCNGG	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	462
BseCI	ATCGAT	1 cut(s)	173
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	405
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	391, 419
BshFI	GGCC	2 cut(s)	379, 388
BshVI	ATCGAT	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	467
BsnI	GGCC	2 cut(s)	379, 388
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	346, 464
BspANI	GGCC	2 cut(s)	379, 388
BspCNI	CTCAG	1 cut(s)	27
BspDI	ATCGAT	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	1 cut(s)	472
BspTI	CTTAAG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	405
BssMI	GATC	2 cut(s)	346, 464
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	2 cut(s)	234, 255
BstAFI	CTTAAG	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	160, 377, 386
BstDEI	CTNAG	2 cut(s)	14, 22
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	224
BstKTI	GATC	2 cut(s)	349, 467
BstMBI	GATC	2 cut(s)	346, 464
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 381, 385
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	391, 419
Bsu15I	ATCGAT	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	379, 388
BsuTUI	ATCGAT	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	224
Cac8I	GCNNGC	3 cut(s)	160, 377, 386
ClaI	ATCGAT	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	1 cut(s)	427
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	2 cut(s)	14, 22
DpnI	GATC	2 cut(s)	348, 466
DpnII	GATC	2 cut(s)	346, 464
Eam1104I	CTCTTC	2 cut(s)	234, 255
EarI	CTCTTC	2 cut(s)	234, 255
Eco57I	CTGAAG	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	460
FaeI	CATG	1 cut(s)	430
FaiI	YATR	5 cut(s)	145, 345, 428, 475, 477
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 237, 269
FatI	CATG	1 cut(s)	426
FauNDI	CATATG	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	405, 408
FokI	GGATG	1 cut(s)	211
Fsp4HI	GCNGC	2 cut(s)	405, 408
GluI	GCNGC	2 cut(s)	405, 408
HaeIII	GGCC	2 cut(s)	379, 388
Hin1II	CATG	1 cut(s)	430
HinfI	GANTC	2 cut(s)	150, 170
Hpy188I	TCNGA	2 cut(s)	17, 453
Hpy188III	TCNNGA	2 cut(s)	236, 257
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	99, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 381, 385
HpyF3I	CTNAG	2 cut(s)	14, 22
Hsp92II	CATG	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	346, 464
Lsp1109I	GCAGC	2 cut(s)	391, 419
MalI	GATC	2 cut(s)	348, 466
MboI	GATC	2 cut(s)	346, 464
MboII	GAAGA	6 cut(s)	251, 257, 272, 312, 317, 341
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	2 cut(s)	100, 132
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	45, 235, 368, 390
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	4 cut(s)	104, 120, 177, 191
MspCI	CTTAAG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	105, 381, 385
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	2 cut(s)	346, 464
NlaIII	CATG	1 cut(s)	430
NlaIV	GGNNCC	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	406, 409
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	219
PstI	CTGCAG	1 cut(s)	409
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
SaqAI	TTAA	4 cut(s)	104, 120, 177, 191
SatI	GCNGC	2 cut(s)	405, 408
Sau3AI	GATC	2 cut(s)	346, 464
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	5 cut(s)	28, 372, 412, 425, 472
SfcI	CTRYAG	1 cut(s)	405
SfiI	GGCCNNNNNGGCC	1 cut(s)	385
SmlI	CTYRAG	2 cut(s)	152, 190
SmoI	CTYRAG	2 cut(s)	152, 190
Sse9I	AATT	2 cut(s)	100, 132
SspI	AATATT	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	3 cut(s)	77, 148, 173
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	2 cut(s)	100, 132
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	4 cut(s)	104, 120, 177, 191
Tru9I	TTAA	4 cut(s)	104, 120, 177, 191
TseI	GCWGC	2 cut(s)	404, 407
TspGWI	ACGGA	1 cut(s)	309
Vha464I	CTTAAG	1 cut(s)	190
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.