Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012869

Physical Location & Seq

Genomic Coordinates Forward (+)

26843628 .. 26844492

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1177300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGACAGAAGGGAATGACCAGAAGAAGTTAATTGGCATGGCTCGAGCTACATCAGATCATGCCTTCAATGCCACAATTTGGGATGTCCTTGTTGATCCCAGCTATCAGGGCCAAGGCCTCGGAAAGGCTCTTGTTGAAAAGATTATACGGGCTCTTCTGCAGAGGGACATCGGAAGCATTTCACTCTTTGCAGATAGTCAGGTTGTAGAGTTCTATCAAAATTTGGGTTTTGAACCGGACCCGGAGGGCATCGAAGGCATGTTTTGGTACCCAAAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10

Protein Analysis

94

Amino Acids

10.44

Weight (kDa)

4.61

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	6 - 77	8.9e-15	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	6 - 79	1.6e-13	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	6 - 80	2.5e-12	Acetyltransferase (GNAT) domain
FR47	PF08445	24 - 79	4.3e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32070 AT1G32070 AT1G32070
fragaria_vesca	FvH4_6g09480
malus_domestica	MD04G1177200.v1.1 MD04G1177300.v1.1 MD12G1192400.v1.1
prunus_persica	Prupe.6G296900_v2.0.a1 Prupe.6G297300_v2.0.a1
pyrus_communis	pycom12g17940
rosa_chinensis	RchiOBHm_Chr3g0460061
rosa_laevigata	RLG00000025047
rosa_multiflora	Rmu_sc0021757.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419880
rosa_samantha	Rh3AG097600 Rh3BG100700 Rh3CG102800
rosa_wichuraiana	Rw3G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	267
AccB7I	CCANNNNNTGG	1 cut(s)	78
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	78, 124
AgsI	TTSAA	3 cut(s)	67, 137, 233
AluBI	AGCT	2 cut(s)	47, 102
AluI	AGCT	2 cut(s)	47, 102
AlwI	GGATC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	2 cut(s)	109, 115
ApoI	RAATTY	1 cut(s)	220
Asp700I	GAANNNNTTC	1 cut(s)	178
Asp718I	GGTACC	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	109, 238
AsuC2I	CCSGG	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	2 cut(s)	109, 238
BmiI	GGNNCC	2 cut(s)	240, 269
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	112, 118
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 124
BseDI	CCNNGG	2 cut(s)	112, 118
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	2 cut(s)	78, 124
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	2 cut(s)	111, 117
BshNI	GGYRCC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	236, 242
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	78, 124
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	111, 117
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	55, 94
BspANI	GGCC	2 cut(s)	111, 117
BspLI	GGNNCC	2 cut(s)	240, 269
BspMAI	CTGCAG	1 cut(s)	162
BspPI	GGATC	1 cut(s)	89
BspQI	GCTCTTC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	267
BssECI	CCNNGG	2 cut(s)	112, 118
BssMI	GATC	2 cut(s)	55, 94
BssT1I	CCWWGG	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	159
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	2 cut(s)	58, 97
BstMBI	GATC	2 cut(s)	55, 94
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 108, 255
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	111, 117
BtsCI	GGATG	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	109, 238
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	3 cut(s)	37, 59, 259
CviJI	RGCY	7 cut(s)	41, 47, 102, 111, 117, 128, 152
CviKI_1	RGCY	7 cut(s)	41, 47, 102, 111, 117, 128, 152
CviQI	GTAC	1 cut(s)	268
DpnI	GATC	2 cut(s)	57, 96
DpnII	GATC	2 cut(s)	55, 94
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	112
Eco147I	AGGCCT	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	42
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	3 cut(s)	40, 62, 262
FaiI	YATR	4 cut(s)	38, 60, 146, 260
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	3 cut(s)	36, 58, 258
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	154
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	111, 117
HapII	CCGG	2 cut(s)	236, 242
Hin1II	CATG	3 cut(s)	40, 62, 262
HpaII	CCGG	2 cut(s)	236, 242
Hpy188I	TCNGA	3 cut(s)	55, 122, 173
HpyAV	CCTTC	2 cut(s)	73, 248
HpyCH4V	TGCA	2 cut(s)	160, 191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 108, 255
Hsp92II	CATG	3 cut(s)	40, 62, 262
KpnI	GGTACC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	55, 94
LguI	GCTCTTC	1 cut(s)	159
LpnPI	CCDG	6 cut(s)	32, 92, 112, 185, 249, 255
LweI	GCATC	1 cut(s)	258
MalI	GATC	2 cut(s)	57, 96
MboI	GATC	2 cut(s)	55, 94
MboII	GAAGA	2 cut(s)	34, 146
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	3 cut(s)	30, 75, 220
MnlI	CCTC	3 cut(s)	128, 156, 238
MroXI	GAANNNNTTC	1 cut(s)	178
MseI	TTAA	1 cut(s)	29
MspI	CCGG	2 cut(s)	236, 242
MspR9I	CCNGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	68, 108, 255
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	2 cut(s)	55, 94
NlaIII	CATG	3 cut(s)	40, 62, 262
NlaIV	GGNNCC	2 cut(s)	240, 269
NspI	RCATGY	1 cut(s)	262
PaeR7I	CTCGAG	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	178
PflMI	CCANNNNNTGG	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	240, 269
PspPI	GGNCC	2 cut(s)	109, 238
PspXI	VCTCGAGB	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	162
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	55, 94
Sau96I	GGNCC	2 cut(s)	109, 238
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	3 cut(s)	49, 104, 204
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	1 cut(s)	158
Sfr274I	CTCGAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	3 cut(s)	30, 75, 220
SseBI	AGGCCT	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	112
TaqI	TCGA	2 cut(s)	43, 252
TasI	AATT	3 cut(s)	30, 75, 220
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	220
XceI	RCATGY	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.