Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0012869

Physical Location & Seq

Genomic Coordinates Forward (+)

27427126 .. 27429716

Gene Structure 2591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1192400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCGTACGCTCGGTGCTGCCTGCGCCTACCCTCTATGCCGGATTGTTTCGTTTGAATCGTGCCGTCAAGCATCGGATAAGTTGTTGTTTCCATGCAATGTGAGAGAGCAGCTTGCCAAAGCAAGAAGGATGCATAAGGGATACCGACTCAAGGCTGGCTTTTGGGAATCCATTAAATCCGGTATTTTAAATAACAACACCACACAAGTAGTAGAACCACCCTCCACGCTCCCGGAAGAGGAAGAAGAAGAACCTCTGCCCCAAGAATTAGTTCTGATTCAGAAGACTGAACCAGATGGAACTGTTGAAGAAATAATATTTTCTTCTGGTGGAGATATTGATGTGTACGATCTTCAAGCCCTTTGTGATAAGGTTGGTTGGCCAAGGAGGCCGCTGTCGAAACTAGCTGCAGCTTTGAAAAATAGCTACTTGGTTGCAACATTGCATTCAGTTCGGAAATCACCTGGATCAGAAGGGAATTACCAGAAGAAGTTAATTGGCATGGCTCGAGCTACATCAGATCATGCCTTCAATGCCACAATTTGGGATGTCCTTGTTGATCCCGGCTATCAGGGCCAAGGCCTTGGGAAGGCTCTTGTTGAAAAGATTATACGAGCTCTTTTGCAGAGGGACATCGGAAACATTTCACTCTTTGCTGATAGTCAGGTTGTGGAGTTCTATCAAAATTTGGGTTTTGAACCCGACCCGGAGGGCATCAAAGGCATGTTTTGGTACCCAAAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10

Protein Analysis

249

Amino Acids

27.7

Weight (kDa)

6.01

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	159 - 232	1.1e-13	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	161 - 234	9.9e-11	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	163 - 234	7.7e-12	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32070 AT1G32070 AT1G32070
fragaria_vesca	FvH4_6g09480
malus_domestica	MD04G1177200.v1.1 MD04G1177300.v1.1 MD12G1192400.v1.1
prunus_persica	Prupe.6G296900_v2.0.a1 Prupe.6G297300_v2.0.a1
pyrus_communis	pycom12g17940
rosa_chinensis	RchiOBHm_Chr3g0460061
rosa_laevigata	RLG00000025047
rosa_multiflora	Rmu_sc0021757.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419880
rosa_samantha	Rh3AG097600 Rh3BG100700 Rh3CG102800
rosa_wichuraiana	Rw3G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	732
AccB1I	GGYRCC	1 cut(s)	732
AccB7I	CCANNNNNTGG	1 cut(s)	543
AciI	CCGC	1 cut(s)	392
AclWI	GGATC	2 cut(s)	475, 554
AcoI	YGGCCR	1 cut(s)	380
AcsI	RAATTY	1 cut(s)	685
AfaI	GTAC	3 cut(s)	7, 347, 734
AfiI	CCNNNNNNNGG	4 cut(s)	151, 238, 543, 589
AgsI	TTSAA	7 cut(s)	56, 308, 356, 418, 532, 602, 698
AjnI	CCWGG	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
AluBI	AGCT	6 cut(s)	112, 407, 413, 426, 512, 617
AluI	AGCT	6 cut(s)	112, 407, 413, 426, 512, 617
Alw21I	GWGCWC	1 cut(s)	619
AlwI	GGATC	2 cut(s)	475, 554
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	4 cut(s)	380, 389, 574, 580
ApeKI	GCWGC	4 cut(s)	17, 109, 407, 410
ApoI	RAATTY	1 cut(s)	685
Asp700I	GAANNNNTTC	2 cut(s)	270, 643
Asp718I	GGTACC	1 cut(s)	732
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	574
AsuC2I	CCSGG	3 cut(s)	233, 564, 707
AsuHPI	GGTGA	1 cut(s)	453
AvaI	CYCGRG	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	4 cut(s)	4, 121, 394, 422
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	1 cut(s)	465
BciVI	GTATCC	1 cut(s)	134
BcnI	CCSGG	3 cut(s)	233, 564, 707
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	408
BfuI	GTATCC	1 cut(s)	134
BglI	GCCNNNNNGGC	1 cut(s)	388
BisI	GCNGC	5 cut(s)	18, 110, 392, 408, 411
BlsI	GCNGC	5 cut(s)	19, 111, 393, 409, 412
Bme1390I	CCNGG	4 cut(s)	233, 465, 564, 707
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	1 cut(s)	734
BmrFI	CCNGG	4 cut(s)	233, 465, 564, 707
BmsI	GCATC	3 cut(s)	80, 120, 723
BpiI	GAAGAC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	3 cut(s)	233, 564, 707
BsaJI	CCNNGG	3 cut(s)	383, 577, 583
BsaWI	WCCGGW	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 238, 543, 589
Bse3DI	GCAATG	2 cut(s)	103, 440
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	3 cut(s)	383, 577, 583
BseGI	GGATG	2 cut(s)	135, 553
BseLI	CCNNNNNNNGG	4 cut(s)	151, 238, 543, 589
BseMI	GCAATG	2 cut(s)	103, 440
BseXI	GCAGC	4 cut(s)	4, 121, 394, 422
BshFI	GGCC	4 cut(s)	382, 391, 576, 582
BshNI	GGYRCC	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	619
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	5 cut(s)	40, 180, 233, 564, 707
BsiWI	CGTACG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	4 cut(s)	151, 238, 543, 589
BsmFI	GGGAC	1 cut(s)	644
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	4 cut(s)	382, 391, 576, 582
BsoBI	CYCGRG	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	4 cut(s)	349, 467, 520, 559
BspACI	CCGC	1 cut(s)	392
BspANI	GGCC	4 cut(s)	382, 391, 576, 582
BspLI	GGNNCC	1 cut(s)	734
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	2 cut(s)	475, 554
BspT107I	GGYRCC	1 cut(s)	732
BsrDI	GCAATG	2 cut(s)	103, 440
BssECI	CCNNGG	3 cut(s)	383, 577, 583
BssMI	GATC	4 cut(s)	349, 467, 520, 559
BssT1I	CCWWGG	3 cut(s)	383, 577, 583
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	22, 114, 157
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	135, 553
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	4 cut(s)	352, 470, 523, 562
BstMBI	GATC	4 cut(s)	349, 467, 520, 559
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 388, 533, 573, 720
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	4 cut(s)	231, 463, 562, 705
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	4 cut(s)	4, 121, 394, 422
BstV2I	GAAGAC	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	584
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	4 cut(s)	382, 391, 576, 582
BtsCI	GGATG	2 cut(s)	135, 553
Cac8I	GCNNGC	3 cut(s)	22, 114, 157
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	574
Csp6I	GTAC	3 cut(s)	6, 346, 733
CviAII	CATG	4 cut(s)	93, 502, 524, 724
CviQI	GTAC	3 cut(s)	6, 346, 733
DpnI	GATC	4 cut(s)	351, 469, 522, 561
DpnII	GATC	4 cut(s)	349, 467, 520, 559
DraI	TTTAAA	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	380
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	617
Eco130I	CCWWGG	3 cut(s)	383, 577, 583
Eco147I	AGGCCT	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	619
Eco53kI	GAGCTC	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	617
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	3 cut(s)	383, 577, 583
EcoT22I	ATGCAT	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	619
ErhI	CCWWGG	3 cut(s)	383, 577, 583
FaeI	CATG	4 cut(s)	96, 505, 527, 727
FaiI	YATR	7 cut(s)	37, 94, 135, 503, 525, 611, 725
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	4 cut(s)	92, 501, 523, 723
Fnu4HI	GCNGC	5 cut(s)	18, 110, 392, 408, 411
FokI	GGATG	2 cut(s)	142, 560
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	5 cut(s)	18, 110, 392, 408, 411
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	5 cut(s)	18, 110, 392, 408, 411
HaeIII	GGCC	4 cut(s)	382, 391, 576, 582
HapII	CCGG	5 cut(s)	40, 180, 233, 564, 707
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	96, 505, 527, 727
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	4 cut(s)	56, 147, 167, 277
HpaII	CCGG	5 cut(s)	40, 180, 233, 564, 707
HphI	GGTGA	1 cut(s)	453
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	7 cut(s)	76, 276, 282, 456, 472, 520, 638
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	4 cut(s)	120, 467, 538, 583
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	6 cut(s)	96, 133, 410, 437, 445, 625
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 388, 533, 573, 720
Hsp92II	CATG	4 cut(s)	96, 505, 527, 727
HspAI	GCGC	1 cut(s)	24
KpnI	GGTACC	1 cut(s)	736
Kzo9I	GATC	4 cut(s)	349, 467, 520, 559
LmnI	GCTCC	1 cut(s)	234
Lsp1109I	GCAGC	4 cut(s)	4, 121, 394, 422
LweI	GCATC	3 cut(s)	80, 120, 723
MaeI	CTAG	1 cut(s)	404
MalI	GATC	4 cut(s)	351, 469, 522, 561
MboI	GATC	4 cut(s)	349, 467, 520, 559
MboII	GAAGA	9 cut(s)	248, 254, 257, 260, 295, 315, 320, 344, 499
MhlI	GDGCHC	1 cut(s)	619
MlsI	TGGCCA	1 cut(s)	382
MluCI	AATT	5 cut(s)	266, 478, 495, 540, 685
MluNI	TGGCCA	1 cut(s)	382
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	7 cut(s)	42, 232, 232, 264, 381, 621, 703
Mox20I	TGGCCA	1 cut(s)	382
Mph1103I	ATGCAT	1 cut(s)	135
MroXI	GAANNNNTTC	2 cut(s)	270, 643
MscI	TGGCCA	1 cut(s)	382
MseI	TTAA	3 cut(s)	174, 188, 494
Msp20I	TGGCCA	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	5 cut(s)	40, 180, 233, 564, 707
MspR9I	CCNGG	4 cut(s)	233, 465, 564, 707
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	5 cut(s)	23, 388, 533, 573, 720
NciI	CCSGG	3 cut(s)	233, 564, 707
NdeII	GATC	4 cut(s)	349, 467, 520, 559
NlaIII	CATG	4 cut(s)	96, 505, 527, 727
NlaIV	GGNNCC	1 cut(s)	734
NsiI	ATGCAT	1 cut(s)	135
NspI	RCATGY	1 cut(s)	727
PaeR7I	CTCGAG	1 cut(s)	507
PceI	AGGCCT	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PctI	GAATGC	1 cut(s)	445
PdmI	GAANNNNTTC	2 cut(s)	270, 643
PfeI	GAWTC	3 cut(s)	56, 167, 277
Pfl23II	CGTACG	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	543
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	5 cut(s)	19, 111, 393, 409, 412
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspLI	CGTACG	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	734
PspPI	GGNCC	1 cut(s)	574
PspXI	VCTCGAGB	1 cut(s)	507
PstI	CTGCAG	1 cut(s)	412
RsaI	GTAC	3 cut(s)	7, 347, 734
RsaNI	GTAC	3 cut(s)	6, 346, 733
SacI	GAGCTC	1 cut(s)	619
SaqAI	TTAA	3 cut(s)	174, 188, 494
SatI	GCNGC	5 cut(s)	18, 110, 392, 408, 411
Sau3AI	GATC	4 cut(s)	349, 467, 520, 559
Sau96I	GGNCC	1 cut(s)	574
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	4 cut(s)	233, 465, 564, 707
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	3 cut(s)	80, 120, 723
SfcI	CTRYAG	1 cut(s)	408
SfiI	GGCCNNNNNGGCC	1 cut(s)	388
Sfr274I	CTCGAG	1 cut(s)	507
SlaI	CTCGAG	1 cut(s)	507
SmlI	CTYRAG	2 cut(s)	149, 507
SmoI	CTYRAG	2 cut(s)	149, 507
Sse9I	AATT	5 cut(s)	266, 478, 495, 540, 685
SseBI	AGGCCT	1 cut(s)	582
SsiI	CCGC	1 cut(s)	392
SspI	AATATT	1 cut(s)	318
SspMI	CTAG	1 cut(s)	404
SstI	GAGCTC	1 cut(s)	619
StuI	AGGCCT	1 cut(s)	582
StyD4I	CCNGG	4 cut(s)	231, 463, 562, 705
StyI	CCWWGG	3 cut(s)	383, 577, 583
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	2 cut(s)	398, 508
TasI	AATT	5 cut(s)	266, 478, 495, 540, 685
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	3 cut(s)	56, 167, 277
Tru1I	TTAA	3 cut(s)	174, 188, 494
Tru9I	TTAA	3 cut(s)	174, 188, 494
TseI	GCWGC	4 cut(s)	17, 109, 407, 410
Van91I	CCANNNNNTGG	1 cut(s)	543
XagI	CCTNNNNNAGG	1 cut(s)	587
XapI	RAATTY	1 cut(s)	685
XceI	RCATGY	1 cut(s)	727
XhoI	CTCGAG	1 cut(s)	507
XmnI	GAANNNNTTC	2 cut(s)	270, 643
XspI	CTAG	1 cut(s)	404
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.