Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0012869

Physical Location & Seq

Genomic Coordinates Reverse (-)

7644141 .. 7646631

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCCACAACACTCAGAGCCTTAGCTTCCTATCCTCTGTGCCCTATTGCTTCGTTTGATTTGGGTCGTCAAGTATCGAATAAGTTATTGTTTCCTTGCAATTTAAGCCACAGCCTTATTAAAGGAAGCAGAATTCATAAGACATATCGACTCAAGGCTGGCTTTTGGGAATCGATTAAATCTGGTATCTTAAGCAACAACACAACACAAGTAGTGGAACCACCATCCACACTTCCAGAAGAGGAAGAACCCCTTCCTGAAGAGTTAGTTCTCATTGAAAAGACCGAACCAGACGGAACAGTTGAAGAAATAATATTTTCTTCTGGTGGAGATGTTGATGTGTATGATCTTCAAGCCCTCTGTGATAAGGTTGGCTGGCCTCGCAGGCCACTCTCAAAACTGGCTGCAGCTTTGAAAAATAGCTACATGGTAGCCACATTACATTCGGTTCGGAAATCGCCTGGATCAGACGGGAATGACCAGAAGAAGCTAATTGGCTTGGCGCGAGCTACATCTGACCATGCGTTCAATGCCACAATTTGGGACGTCCTAGTTGATCCTAGCTATCAGGGACAAGGCCTTGGAAAGGCCCTTGTTGAAAAGATTATAAGGGCTCTTCTGCAGAGGGACATTGGCAATATTTCACTTTTTGCAGATAGTCAAGTCGTGGACTTCTATCAAAATTTGGGTTTTGAAGCTGACCCGGAGGGCATCAAAGGCATGTTTTGGTACCCAAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10

Protein Analysis

247

Amino Acids

27.28

Weight (kDa)

5.64

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	159 - 231	2.8e-13	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	160 - 234	3.4e-11	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	161 - 232	1.2e-11	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32070 AT1G32070 AT1G32070
fragaria_vesca	FvH4_6g09480
malus_domestica	MD04G1177200.v1.1 MD04G1177300.v1.1 MD12G1192400.v1.1
prunus_persica	Prupe.6G296900_v2.0.a1 Prupe.6G297300_v2.0.a1
pyrus_communis	pycom12g17940
rosa_chinensis	RchiOBHm_Chr3g0460061
rosa_laevigata	RLG00000025047
rosa_multiflora	Rmu_sc0021757.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419880
rosa_samantha	Rh3AG097600 Rh3BG100700 Rh3CG102800
rosa_wichuraiana	Rw3G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AatII	GACGTC	1 cut(s)	549
Acc65I	GGTACC	1 cut(s)	729
AccB1I	GGYRCC	1 cut(s)	729
AccB7I	CCANNNNNTGG	1 cut(s)	540
AccII	CGCG	1 cut(s)	505
AclWI	GGATC	2 cut(s)	472, 551
AcsI	RAATTY	2 cut(s)	132, 682
AcuI	CTGAAG	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	2 cut(s)	540, 586
AflII	CTTAAG	1 cut(s)	190
AgsI	TTSAA	7 cut(s)	278, 305, 353, 415, 529, 599, 695
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	7 cut(s)	26, 410, 423, 490, 509, 564, 698
AluI	AGCT	7 cut(s)	26, 410, 423, 490, 509, 564, 698
AlwI	GGATC	2 cut(s)	472, 551
AoxI	GGCC	4 cut(s)	377, 386, 577, 588
ApeKI	GCWGC	2 cut(s)	404, 407
ApoI	RAATTY	2 cut(s)	132, 682
Asp700I	GAANNNNTTC	1 cut(s)	252
Asp718I	GGTACC	1 cut(s)	729
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	589
AsuC2I	CCSGG	1 cut(s)	704
BaeGI	GKGCMC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	729
BanII	GRGCYC	1 cut(s)	616
BbvI	GCAGC	2 cut(s)	391, 419
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	704
BfaI	CTAG	2 cut(s)	551, 561
BfmI	CTRYAG	2 cut(s)	405, 620
BfrI	CTTAAG	1 cut(s)	190
BglI	GCCNNNNNGGC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	405, 408
BlsI	GCNGC	2 cut(s)	406, 409
Bme1390I	CCNGG	2 cut(s)	462, 704
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	2 cut(s)	219, 731
BmrFI	CCNGG	2 cut(s)	462, 704
BmsI	GCATC	1 cut(s)	720
Bpu10I	CCTNAGC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	704
Bsa29I	ATCGAT	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	2 cut(s)	540, 586
Bse1I	ACTGG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	462
BseCI	ATCGAT	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	580
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	540, 586
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	405
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	391, 419
Bsh1236I	CGCG	1 cut(s)	505
BshFI	GGCC	4 cut(s)	379, 388, 579, 590
BshNI	GGYRCC	1 cut(s)	729
BshVI	ATCGAT	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	704
BslFI	GGGAC	3 cut(s)	557, 585, 641
BslI	CCNNNNNNNGG	2 cut(s)	540, 586
BsmFI	GGGAC	3 cut(s)	557, 585, 641
BsnI	GGCC	4 cut(s)	379, 388, 579, 590
Bsp1286I	GDGCHC	2 cut(s)	44, 616
Bsp143I	GATC	3 cut(s)	346, 464, 556
BspANI	GGCC	4 cut(s)	379, 388, 579, 590
BspCNI	CTCAG	1 cut(s)	27
BspDI	ATCGAT	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	219, 731
BspMAI	CTGCAG	2 cut(s)	409, 624
BspPI	GGATC	2 cut(s)	472, 551
BspQI	GCTCTTC	1 cut(s)	621
BspT107I	GGYRCC	1 cut(s)	729
BspTI	CTTAAG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	580
BssMI	GATC	3 cut(s)	346, 464, 556
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	3 cut(s)	234, 255, 621
BstACI	GRCGYC	1 cut(s)	546
BstAFI	CTTAAG	1 cut(s)	190
BstC8I	GCNNGC	4 cut(s)	160, 377, 386, 507
BstDEI	CTNAG	2 cut(s)	14, 22
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	224
BstFNI	CGCG	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	3 cut(s)	349, 467, 559
BstMBI	GATC	3 cut(s)	346, 464, 556
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 381, 385, 530, 717
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	2 cut(s)	460, 702
BstSFI	CTRYAG	2 cut(s)	405, 620
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	1 cut(s)	505
BstV1I	GCAGC	2 cut(s)	391, 419
Bsu15I	ATCGAT	1 cut(s)	173
BsuRI	GGCC	4 cut(s)	379, 388, 579, 590
BsuTUI	ATCGAT	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	224
Cac8I	GCNNGC	4 cut(s)	160, 377, 386, 507
CfoI	GCGC	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	589
ClaI	ATCGAT	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	3 cut(s)	427, 521, 721
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	2 cut(s)	14, 22
DpnI	GATC	3 cut(s)	348, 466, 558
DpnII	GATC	3 cut(s)	346, 464, 556
Eam1104I	CTCTTC	3 cut(s)	234, 255, 621
EarI	CTCTTC	3 cut(s)	234, 255, 621
Eco130I	CCWWGG	1 cut(s)	580
Eco147I	AGGCCT	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	3 cut(s)	430, 524, 724
FaiI	YATR	7 cut(s)	138, 145, 345, 428, 522, 608, 722
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 237, 269
FaqI	GGGAC	3 cut(s)	557, 585, 641
FatI	CATG	3 cut(s)	426, 520, 720
Fnu4HI	GCNGC	2 cut(s)	405, 408
FokI	GGATG	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	2 cut(s)	405, 408
FspBI	CTAG	2 cut(s)	551, 561
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	2 cut(s)	405, 408
HaeIII	GGCC	4 cut(s)	379, 388, 579, 590
HapII	CCGG	1 cut(s)	704
HhaI	GCGC	1 cut(s)	505
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	3 cut(s)	430, 524, 724
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HinfI	GANTC	2 cut(s)	150, 170
HpaII	CCGG	1 cut(s)	704
Hpy166II	GTNNAC	1 cut(s)	670
Hpy188I	TCNGA	4 cut(s)	17, 453, 469, 517
Hpy188III	TCNNGA	2 cut(s)	236, 257
Hpy8I	GTNNAC	1 cut(s)	670
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	4 cut(s)	99, 407, 622, 653
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 381, 385, 530, 717
HpyF3I	CTNAG	2 cut(s)	14, 22
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	3 cut(s)	430, 524, 724
HspAI	GCGC	1 cut(s)	503
KpnI	GGTACC	1 cut(s)	733
Kzo9I	GATC	3 cut(s)	346, 464, 556
LguI	GCTCTTC	1 cut(s)	621
Lsp1109I	GCAGC	2 cut(s)	391, 419
LweI	GCATC	1 cut(s)	720
MaeI	CTAG	2 cut(s)	551, 561
MaeII	ACGT	1 cut(s)	546
MalI	GATC	3 cut(s)	348, 466, 558
MboI	GATC	3 cut(s)	346, 464, 556
MboII	GAAGA	8 cut(s)	251, 257, 272, 312, 317, 341, 496, 608
MhlI	GDGCHC	2 cut(s)	44, 616
MluCI	AATT	5 cut(s)	100, 132, 492, 537, 682
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	6 cut(s)	45, 235, 368, 390, 618, 700
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	4 cut(s)	104, 120, 177, 191
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	1 cut(s)	704
MspR9I	CCNGG	2 cut(s)	462, 704
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	5 cut(s)	105, 381, 385, 530, 717
NciI	CCSGG	1 cut(s)	704
NdeII	GATC	3 cut(s)	346, 464, 556
NlaIII	CATG	3 cut(s)	430, 524, 724
NlaIV	GGNNCC	2 cut(s)	219, 731
NspI	RCATGY	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	579
PciSI	GCTCTTC	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	540
PkrI	GCNGC	2 cut(s)	406, 409
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PsiI	TTATAA	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	219, 731
PspPI	GGNCC	1 cut(s)	589
PstI	CTGCAG	2 cut(s)	409, 624
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	4 cut(s)	104, 120, 177, 191
SatI	GCNGC	2 cut(s)	405, 408
Sau3AI	GATC	3 cut(s)	346, 464, 556
Sau96I	GGNCC	1 cut(s)	589
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	2 cut(s)	462, 704
SduI	GDGCHC	2 cut(s)	44, 616
SetI	ASST	9 cut(s)	28, 372, 412, 425, 492, 511, 549, 566, 700
SfaNI	GCATC	1 cut(s)	720
SfcI	CTRYAG	2 cut(s)	405, 620
SfiI	GGCCNNNNNGGCC	1 cut(s)	385
SmlI	CTYRAG	2 cut(s)	152, 190
SmoI	CTYRAG	2 cut(s)	152, 190
Sse9I	AATT	5 cut(s)	100, 132, 492, 537, 682
SseBI	AGGCCT	1 cut(s)	579
SspI	AATATT	2 cut(s)	315, 640
SspMI	CTAG	2 cut(s)	551, 561
StuI	AGGCCT	1 cut(s)	579
StyD4I	CCNGG	2 cut(s)	460, 702
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	3 cut(s)	77, 148, 173
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	5 cut(s)	100, 132, 492, 537, 682
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	4 cut(s)	104, 120, 177, 191
Tru9I	TTAA	4 cut(s)	104, 120, 177, 191
TseI	GCWGC	2 cut(s)	404, 407
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	309
Van91I	CCANNNNNTGG	1 cut(s)	540
Vha464I	CTTAAG	1 cut(s)	190
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	2 cut(s)	132, 682
XceI	RCATGY	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	551, 561
ZraI	GACGTC	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.