MD04G1180500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0014347
Physical Location & Seq
Forward (+)
27136950 .. 27138287
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1180500.v1.1.491

Sequence Viewer

Length: 393 bp
ATGGACGACTCCACAAACAGTAACACCATAAAGTTGGTGGTTTTCTTAATCTTCATCATGGGGCTGCTATTAACCATTAACCCTGCATCAGCAACTGGTGAGACGTATGAGCCAAACCTAAAGCAATCAACAACGACGGAGACATTTCATCCCGCCGGTCCGACGGAGTATAAGCTTTTTATTGATGGCGTGACTAAACCTAATCACGATACACAACGGCGGCGACTGGCTCCATATCAGCTGTGTTTGCCGTGCAAGTGCTGCTCAGCCACCACCTGTATCTCCATGCCTTGCTGCTTCGGCATCGACTGCCAGCTCCCCAACAAACCTTTTGGAGTTTGCGCTTTTGTCCCCAAGACTTGCAACTGCACCAATTGCACAACTCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.21

Weight (kDa)

7.43

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7866 PF25268 78 - 127 1.6e-20 Domain of unknown function (DUF7866)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014347)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01015 AT5G01015
fragaria_vesca FvH4_6g09130
malus_domestica MD04G1180500.v1.1 MD12G1195900.v1.1
prunus_persica Prupe.6G300400_v2.0.a1
pyrus_communis pycom04g15960 pycom12g18210
rosa_chinensis RchiOBHm_Chr3g0459341
rosa_laevigata RLG00000025089
rosa_roxburghii Rroxscaffold_6G00420250
rosa_rugosa Rorug03G0035500
rosa_samantha Rh3AG093600 Rh3BG096500 Rh3CG097700 Rh3DG097100
rosa_wichuraiana Rw3G008050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 153, 220
AluBI AGCT 3 cut(s) 175, 241, 316
AluI AGCT 3 cut(s) 175, 241, 316
Alw26I GTCTC 2 cut(s) 95, 134
AlwNI CAGNNNCTG 1 cut(s) 95
ApeKI GCWGC 3 cut(s) 64, 261, 294
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 51, 248, 281
BccI CCATC 1 cut(s) 179
BceAI ACGGC 2 cut(s) 233, 235
BcoDI GTCTC 2 cut(s) 95, 134
BisI GCNGC 4 cut(s) 65, 221, 262, 295
BlpI GCTNAGC 1 cut(s) 265
BlsI GCNGC 4 cut(s) 66, 222, 263, 296
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 2 cut(s) 95, 312
Bpu1102I GCTNAGC 1 cut(s) 265
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 2 cut(s) 100, 231
BseGI GGATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 2 cut(s) 100, 231
BseXI GCAGC 3 cut(s) 51, 248, 281
BsgI GTGCAG 1 cut(s) 352
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 95, 134
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 335
Bsp1720I GCTNAGC 1 cut(s) 265
BspACI CCGC 2 cut(s) 153, 220
BspCNI CTCAG 1 cut(s) 278
BspLI GGNNCC 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 2 cut(s) 100, 231
BssAI RCCGGY 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 20
BstAPI GCANNNNNTGC 3 cut(s) 261, 309, 375
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 344
BstMAI GTCTC 2 cut(s) 95, 134
BstMWI GCNNNNNNNGC 5 cut(s) 247, 261, 300, 309, 375
BstV1I GCAGC 3 cut(s) 51, 248, 281
BstXI CCANNNNNNTGG 1 cut(s) 34
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 314
CaiI CAGNNNCTG 1 cut(s) 95
CfoI GCGC 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 158
CpoI CGGWCCG 1 cut(s) 158
CspI CGGWCCG 1 cut(s) 158
CviAII CATG 2 cut(s) 58, 286
CviJI RGCY 7 cut(s) 64, 112, 175, 230, 241, 269, 316
CviKI_1 RGCY 7 cut(s) 64, 112, 175, 230, 241, 269, 316
DdeI CTNAG 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 2 cut(s) 61, 289
FaiI YATR 6 cut(s) 29, 59, 108, 171, 235, 287
FaqI GGGAC 1 cut(s) 335
FatI CATG 2 cut(s) 57, 285
FauI CCCGC 1 cut(s) 160
Fnu4HI GCNGC 4 cut(s) 65, 221, 262, 295
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 65, 221, 262, 295
GlaI GCGC 1 cut(s) 343
GluI GCNGC 4 cut(s) 65, 221, 262, 295
HapII CCGG 1 cut(s) 156
HhaI GCGC 1 cut(s) 344
Hin1II CATG 2 cut(s) 61, 289
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 206
Hpy99I CGWCG 2 cut(s) 139, 166
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 5 cut(s) 86, 255, 363, 369, 378
HpyF10VI GCNNNNNNNGC 5 cut(s) 247, 261, 300, 309, 375
HpyF3I CTNAG 1 cut(s) 265
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 2 cut(s) 61, 289
HspAI GCGC 1 cut(s) 342
LmnI GCTCC 2 cut(s) 235, 321
LpnPI CCDG 6 cut(s) 81, 96, 169, 212, 289, 326
Lsp1109I GCAGC 3 cut(s) 51, 248, 281
LweI GCATC 2 cut(s) 95, 312
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 20, 190
MboII GAAGA 1 cut(s) 43
MfeI CAATTG 1 cut(s) 373
MluCI AATT 1 cut(s) 373
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 1 cut(s) 185
MseI TTAA 3 cut(s) 47, 71, 78
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 373
MwoI GCNNNNNNNGC 5 cut(s) 247, 261, 300, 309, 375
NlaIII CATG 2 cut(s) 61, 289
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 190
PkrI GCNGC 4 cut(s) 66, 222, 263, 296
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 241
Rsr2I CGGWCCG 1 cut(s) 158
RsrII CGGWCCG 1 cut(s) 158
SaqAI TTAA 3 cut(s) 47, 71, 78
SatI GCNGC 4 cut(s) 65, 221, 262, 295
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 2
SetI ASST 8 cut(s) 107, 120, 177, 202, 243, 278, 318, 331
SfaNI GCATC 2 cut(s) 95, 312
SinI GGWCC 1 cut(s) 158
Sse9I AATT 1 cut(s) 373
SsiI CCGC 2 cut(s) 153, 220
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 306
TasI AATT 1 cut(s) 373
TauI GCSGC 1 cut(s) 223
Tru1I TTAA 3 cut(s) 47, 71, 78
Tru9I TTAA 3 cut(s) 47, 71, 78
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 3 cut(s) 64, 261, 294
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 43, 137
TspGWI ACGGA 2 cut(s) 152, 179
VpaK11BI GGWCC 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.