Rh3BG096500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0014347
Physical Location & Seq
Reverse (-)
7741554 .. 7742030
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG096500.1

Sequence Viewer

Length: 381 bp
ATGAATGACTACGATTTCATAATCCGTAGCACCATCAAATCAGTTGTAGCCATAGTCCTCTTCATGGCGCTATTGACCATGAGTAGTACTACTACTACTTCTGCAGTATCTCATGATGTTCTTGAGTTTATTCCAATGAAGAATTCAATGGAGTTTCAAGTATTGGACGTTGTTAGAGCTCACGATGAAGCACGAAGACGGAGGCTGGAGCCCTACCAACTATGCTTGGTTTGCAAGTGCTGCGCCGGCACAACATGCTCCACCATGCCTTGCTGTTTCGGCATAGACTGCCAGCTTCCCGGGAAGCCCTTTGGGGTTTGCGCCTTTGTTCCAAAGATCTGCAACTGTACCAACTGTACAAGTAGTAGTAGTACTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.86

Weight (kDa)

7.44

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7866 PF25268 70 - 120 1.3e-19 Domain of unknown function (DUF7866)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014347)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01015 AT5G01015
fragaria_vesca FvH4_6g09130
malus_domestica MD04G1180500.v1.1 MD12G1195900.v1.1
prunus_persica Prupe.6G300400_v2.0.a1
pyrus_communis pycom04g15960 pycom12g18210
rosa_chinensis RchiOBHm_Chr3g0459341
rosa_laevigata RLG00000025089
rosa_roxburghii Rroxscaffold_6G00420250
rosa_rugosa Rorug03G0035500
rosa_samantha Rh3AG093600 Rh3BG096500 Rh3CG097700 Rh3DG097100
rosa_wichuraiana Rw3G008050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 142
AfaI GTAC 4 cut(s) 88, 349, 358, 373
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 147, 158
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AluBI AGCT 2 cut(s) 179, 295
AluI AGCT 2 cut(s) 179, 295
Alw21I GWGCWC 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 1 cut(s) 142
AspLEI GCGC 3 cut(s) 70, 245, 323
AsuC2I CCSGG 2 cut(s) 300, 301
AvaI CYCGRG 1 cut(s) 299
BanII GRGCYC 2 cut(s) 181, 213
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 41
BcnI CCSGG 2 cut(s) 300, 301
BfmI CTRYAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 71
BglII AGATCT 1 cut(s) 336
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
BmcAI AGTACT 2 cut(s) 88, 373
Bme1390I CCNGG 2 cut(s) 300, 301
BmeT110I CYCGRG 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 2 cut(s) 300, 301
BpiI GAAGAC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 2 cut(s) 300, 301
BsaJI CCNNGG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 181
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 2 cut(s) 246, 300
BslI CCNNNNNNNGG 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 181, 213
Bsp1407I TGTACA 1 cut(s) 356
Bsp143I GATC 1 cut(s) 336
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 347, 356
Bst6I CTCTTC 1 cut(s) 65
BstAPI GCANNNNNTGC 3 cut(s) 240, 255, 288
BstAUI TGTACA 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 247, 293
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 3 cut(s) 70, 245, 323
BstKTI GATC 1 cut(s) 339
BstMBI GATC 1 cut(s) 336
BstMWI GCNNNNNNNGC 6 cut(s) 231, 240, 246, 255, 279, 288
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 298, 299
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 227
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
Cac8I GCNNGC 2 cut(s) 247, 293
CciI TCATGA 1 cut(s) 112
CfoI GCGC 3 cut(s) 70, 245, 323
Cfr10I RCCGGY 1 cut(s) 245
Cfr9I CCCGGG 1 cut(s) 299
Csp6I GTAC 4 cut(s) 87, 348, 357, 372
CviAII CATG 5 cut(s) 64, 79, 113, 255, 265
CviJI RGCY 6 cut(s) 50, 179, 205, 211, 295, 307
CviKI_1 RGCY 6 cut(s) 50, 179, 205, 211, 295, 307
CviQI GTAC 4 cut(s) 87, 348, 357, 372
DpnI GATC 1 cut(s) 338
DpnII GATC 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 179
Eco24I GRGCYC 2 cut(s) 181, 213
Eco53kI GAGCTC 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 142
EcoT38I GRGCYC 2 cut(s) 181, 213
FaeI CATG 5 cut(s) 67, 82, 116, 258, 268
FaiI YATR 9 cut(s) 20, 53, 65, 80, 114, 223, 256, 266, 284
FatI CATG 5 cut(s) 63, 78, 112, 254, 264
Fnu4HI GCNGC 1 cut(s) 241
FriOI GRGCYC 2 cut(s) 181, 213
Fsp4HI GCNGC 1 cut(s) 241
GlaI GCGC 3 cut(s) 69, 244, 322
GluI GCNGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 227
HaeII RGCGCY 1 cut(s) 71
HapII CCGG 2 cut(s) 246, 300
HhaI GCGC 3 cut(s) 70, 245, 323
Hin1II CATG 5 cut(s) 67, 82, 116, 258, 268
Hin6I GCGC 3 cut(s) 68, 243, 321
HinP1I GCGC 3 cut(s) 68, 243, 321
HpaII CCGG 2 cut(s) 246, 300
Hpy188III TCNNGA 3 cut(s) 113, 122, 182
HpyCH4III ACNGT 2 cut(s) 347, 356
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 104, 234, 342
HpyF10VI GCNNNNNNNGC 6 cut(s) 231, 240, 246, 255, 279, 288
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 5 cut(s) 67, 82, 116, 258, 268
HspAI GCGC 3 cut(s) 68, 243, 321
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Kzo9I GATC 1 cut(s) 336
LmnI GCTCC 2 cut(s) 208, 263
LpnPI CCDG 4 cut(s) 191, 259, 305, 313
Lsp1109I GCAGC 1 cut(s) 227
MaeII ACGT 1 cut(s) 168
MalI GATC 1 cut(s) 338
MboI GATC 1 cut(s) 336
MboII GAAGA 3 cut(s) 52, 151, 207
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 2 cut(s) 181, 213
MluCI AATT 1 cut(s) 142
MnlI CCTC 2 cut(s) 68, 195
MroNI GCCGGC 1 cut(s) 245
MspI CCGG 2 cut(s) 246, 300
MspR9I CCNGG 2 cut(s) 300, 301
MwoI GCNNNNNNNGC 6 cut(s) 231, 240, 246, 255, 279, 288
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 2 cut(s) 300, 301
NdeII GATC 1 cut(s) 336
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 5 cut(s) 67, 82, 116, 258, 268
NlaIV GGNNCC 1 cut(s) 210
NspI RCATGY 1 cut(s) 258
PagI TCATGA 1 cut(s) 112
PdiI GCCGGC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 210
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 336
RsaI GTAC 4 cut(s) 88, 349, 358, 373
RsaNI GTAC 4 cut(s) 87, 348, 357, 372
SacI GAGCTC 1 cut(s) 181
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 1 cut(s) 336
ScaI AGTACT 2 cut(s) 88, 373
ScrFI CCNGG 2 cut(s) 300, 301
SduI GDGCHC 2 cut(s) 181, 213
SetI ASST 3 cut(s) 171, 181, 297
SfcI CTRYAG 1 cut(s) 102
SmaI CCCGGG 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 142
SstI GAGCTC 1 cut(s) 181
StyD4I CCNGG 2 cut(s) 298, 299
TaaI ACNGT 2 cut(s) 347, 356
TaiI ACGT 1 cut(s) 171
TasI AATT 1 cut(s) 142
TatI WGTACW 3 cut(s) 86, 356, 371
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 5 cut(s) 7, 17, 52, 152, 201
TspGWI ACGGA 2 cut(s) 14, 214
TspMI CCCGGG 1 cut(s) 299
XapI RAATTY 1 cut(s) 142
XceI RCATGY 1 cut(s) 258
XmaI CCCGGG 1 cut(s) 299
ZrmI AGTACT 2 cut(s) 88, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.