Rh3DG097100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014347
Physical Location & Seq
Reverse (-)
7671874 .. 7691295
19422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG097100.1

Sequence Viewer

Length: 270 bp
ATGAAGAATTCAATGGAGTTTCAAGTATTGGACGTTGTTAGAGCTCACGATGAAGCACGAAGACGGAGGCTGGAGCCCTACCAACTATGCTTGGTTTGCAAGTGCTGCGCCGGCACAACATGCTCCACCATGCCTTGCTGTTTCGGCATAGACTGCCAGCTTCCCGGGAAGCCCTTTGGGTCAGTTCACACCGACAGATCAAATTATCAGAAATTTGAGAATCATGACAGACAGCAAGAGAACAAGTTAACCCTCTTGGTTTCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.24

Weight (kDa)

8.15

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7866 PF25268 25 - 61 2e-12 Domain of unknown function (DUF7866)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014347)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01015 AT5G01015
fragaria_vesca FvH4_6g09130
malus_domestica MD04G1180500.v1.1 MD12G1195900.v1.1
prunus_persica Prupe.6G300400_v2.0.a1
pyrus_communis pycom04g15960 pycom12g18210
rosa_chinensis RchiOBHm_Chr3g0459341
rosa_laevigata RLG00000025089
rosa_roxburghii Rroxscaffold_6G00420250
rosa_rugosa Rorug03G0035500
rosa_samantha Rh3AG093600 Rh3BG096500 Rh3CG097700 Rh3DG097100
rosa_wichuraiana Rw3G008050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 7, 212
AgsI TTSAA 2 cut(s) 12, 23
AluBI AGCT 2 cut(s) 44, 160
AluI AGCT 2 cut(s) 44, 160
Alw21I GWGCWC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 105
ApoI RAATTY 2 cut(s) 7, 212
AspLEI GCGC 1 cut(s) 110
AsuC2I CCSGG 2 cut(s) 165, 166
AvaI CYCGRG 1 cut(s) 164
BanII GRGCYC 2 cut(s) 46, 78
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 92
BcnI CCSGG 2 cut(s) 165, 166
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 165, 166
BmeT110I CYCGRG 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 2 cut(s) 165, 166
BpiI GAAGAC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 92
BpuMI CCSGG 2 cut(s) 165, 166
BsaJI CCNNGG 1 cut(s) 164
Bse118I RCCGGY 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 2 cut(s) 111, 165
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 46, 78
Bsp143I GATC 1 cut(s) 197
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 1 cut(s) 197
BstAPI GCANNNNNTGC 3 cut(s) 105, 120, 153
BstC8I GCNNGC 2 cut(s) 112, 158
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 1 cut(s) 200
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 6 cut(s) 96, 105, 111, 120, 144, 153
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 2 cut(s) 163, 164
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 112, 158
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 110
Cfr9I CCCGGG 1 cut(s) 164
CviAII CATG 3 cut(s) 120, 130, 224
CviJI RGCY 5 cut(s) 44, 70, 76, 160, 172
CviKI_1 RGCY 5 cut(s) 44, 70, 76, 160, 172
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 2 cut(s) 46, 78
Eco53kI GAGCTC 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 7
EcoT38I GRGCYC 2 cut(s) 46, 78
FaeI CATG 3 cut(s) 123, 133, 227
FaiI YATR 5 cut(s) 88, 121, 131, 149, 225
FatI CATG 3 cut(s) 119, 129, 223
Fnu4HI GCNGC 1 cut(s) 106
FriOI GRGCYC 2 cut(s) 46, 78
Fsp4HI GCNGC 1 cut(s) 106
GlaI GCGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 92
HapII CCGG 2 cut(s) 111, 165
HhaI GCGC 1 cut(s) 110
Hin1II CATG 3 cut(s) 123, 133, 227
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HinfI GANTC 1 cut(s) 220
HpaI GTTAAC 1 cut(s) 249
HpaII CCGG 2 cut(s) 111, 165
Hpy166II GTNNAC 2 cut(s) 187, 249
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 2 cut(s) 47, 224
Hpy8I GTNNAC 2 cut(s) 187, 249
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 6 cut(s) 96, 105, 111, 120, 144, 153
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 3 cut(s) 123, 133, 227
HspAI GCGC 1 cut(s) 108
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
KspAI GTTAAC 1 cut(s) 249
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 73, 128
LpnPI CCDG 4 cut(s) 56, 124, 170, 178
Lsp1109I GCAGC 1 cut(s) 92
MaeII ACGT 1 cut(s) 33
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 2 cut(s) 16, 72
MhlI GDGCHC 2 cut(s) 46, 78
MluCI AATT 3 cut(s) 7, 202, 212
MnlI CCTC 2 cut(s) 60, 263
MroNI GCCGGC 1 cut(s) 110
MseI TTAA 1 cut(s) 248
MspI CCGG 2 cut(s) 111, 165
MspR9I CCNGG 2 cut(s) 165, 166
MwoI GCNNNNNNNGC 6 cut(s) 96, 105, 111, 120, 144, 153
NaeI GCCGGC 1 cut(s) 112
NciI CCSGG 2 cut(s) 165, 166
NdeII GATC 1 cut(s) 197
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 3 cut(s) 123, 133, 227
NlaIV GGNNCC 1 cut(s) 75
NspI RCATGY 1 cut(s) 123
PagI TCATGA 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 75
SacI GAGCTC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 1 cut(s) 197
ScrFI CCNGG 2 cut(s) 165, 166
SduI GDGCHC 2 cut(s) 46, 78
SetI ASST 3 cut(s) 36, 46, 162
SmaI CCCGGG 1 cut(s) 166
Sse9I AATT 3 cut(s) 7, 202, 212
SstI GAGCTC 1 cut(s) 46
StyD4I CCNGG 2 cut(s) 163, 164
TaiI ACGT 1 cut(s) 36
TasI AATT 3 cut(s) 7, 202, 212
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TseI GCWGC 1 cut(s) 105
TspDTI ATGAA 2 cut(s) 17, 66
TspGWI ACGGA 1 cut(s) 79
TspMI CCCGGG 1 cut(s) 164
XapI RAATTY 2 cut(s) 7, 212
XceI RCATGY 1 cut(s) 123
XmaI CCCGGG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.