Prupe.6G300400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014347
Physical Location & Seq
Forward (+)
27282126 .. 27283531
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G300400.1

Sequence Viewer

Length: 414 bp
ATGGACGACCTCACAAACAGTAAAAATCCCATAAAACTAGTGCCTTTTCTAATCTTCACCGCCCTATTAGCCATCACTCCTGCAATTGCCGCAGGATCTCATGCAGACGAGTATCAGCCGATACCAAACCAACCAGCCGGGACATTGCAGCCCGTCGGCACGACGGAGTATAGGCTATTGATCGACGTGTTAAAAGCTCCTCCTCATGATCATGATGATATACAGCGGCGGCAGAGGCGGCGGCGGCTGGCGCCGTACCAGCTGTGCTTGCTGTGCAAGTGCTGCTCGTCCACCACGTGCACCTCCATGCCCTGCTGCTTCGGCATCAACTGCCAGCTTCCCAATAAGCCCTTTGGCGTCTGTGCTTTCGTCCCCAGGACCTGCAACTGCACCAATTGCACAACTTCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.08

Weight (kDa)

8.48

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014347)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01015 AT5G01015
fragaria_vesca FvH4_6g09130
malus_domestica MD04G1180500.v1.1 MD12G1195900.v1.1
prunus_persica Prupe.6G300400_v2.0.a1
pyrus_communis pycom04g15960 pycom12g18210
rosa_chinensis RchiOBHm_Chr3g0459341
rosa_laevigata RLG00000025089
rosa_roxburghii Rroxscaffold_6G00420250
rosa_rugosa Rorug03G0035500
rosa_samantha Rh3AG093600 Rh3BG096500 Rh3CG097700 Rh3DG097100
rosa_wichuraiana Rw3G008050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 250
AciI CCGC 7 cut(s) 60, 90, 226, 229, 238, 241, 244
AclWI GGATC 1 cut(s) 103
AcvI CACGTG 1 cut(s) 297
AcyI GRCGYC 2 cut(s) 251, 357
AdeI CACNNNGTG 1 cut(s) 297
AfaI GTAC 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 186
AhlI ACTAGT 1 cut(s) 37
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 3 cut(s) 197, 262, 337
AluI AGCT 3 cut(s) 197, 262, 337
Alw21I GWGCWC 1 cut(s) 302
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 1 cut(s) 103
AlwNI CAGNNNCTG 1 cut(s) 381
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 3 cut(s) 148, 282, 315
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 378
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 1 cut(s) 378
BaeGI GKGCMC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 250
BbrPI CACGTG 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 3 cut(s) 160, 269, 302
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 376
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 1 cut(s) 139
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 254
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 9 cut(s) 90, 149, 227, 230, 239, 242, 245, 283, 316
BlsI GCNGC 9 cut(s) 91, 150, 228, 231, 240, 243, 246, 284, 317
Bme1390I CCNGG 2 cut(s) 139, 376
Bme18I GGWCC 1 cut(s) 378
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 2 cut(s) 139, 376
BmsI GCATC 1 cut(s) 333
BpuMI CCSGG 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 297
BsaHI GRCGYC 2 cut(s) 251, 357
BsaJI CCNNGG 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 374
BseMI GCAATG 1 cut(s) 143
BseRI GAGGAG 2 cut(s) 189, 192
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 3 cut(s) 160, 269, 302
BsgI GTGCAG 1 cut(s) 373
BshNI GGYRCC 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 2 cut(s) 154, 356
BsmFI GGGAC 2 cut(s) 154, 356
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 3 cut(s) 95, 180, 208
BspACI CCGC 7 cut(s) 60, 90, 226, 229, 238, 241, 244
BspHI TCATGA 2 cut(s) 205, 211
BspLI GGNNCC 1 cut(s) 252
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 3 cut(s) 95, 180, 208
BssNI GRCGYC 2 cut(s) 251, 357
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 20
BstACI GRCGYC 2 cut(s) 251, 357
BstAPI GCANNNNNTGC 3 cut(s) 282, 330, 396
BstBAI YACGTR 1 cut(s) 297
BstC8I GCNNGC 3 cut(s) 249, 269, 335
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 3 cut(s) 98, 183, 211
BstMBI GATC 3 cut(s) 95, 180, 208
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 137, 374
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 3 cut(s) 160, 269, 302
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BtrI CACGTC 1 cut(s) 187
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 3 cut(s) 249, 269, 335
CaiI CAGNNNCTG 1 cut(s) 381
CciI TCATGA 2 cut(s) 205, 211
CfoI GCGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 378
CseI GACGC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 256
CviAII CATG 4 cut(s) 101, 206, 212, 307
CviQI GTAC 1 cut(s) 256
DinI GGCGCC 1 cut(s) 252
DpnI GATC 3 cut(s) 97, 182, 210
DpnII GATC 3 cut(s) 95, 180, 208
DraIII CACNNNGTG 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 378
Eco72I CACGTG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 374
EgeI GGCGCC 1 cut(s) 252
EheI GGCGCC 1 cut(s) 252
FaeI CATG 4 cut(s) 104, 209, 215, 310
FaiI YATR 7 cut(s) 32, 102, 171, 207, 213, 221, 308
FaqI GGGAC 2 cut(s) 154, 356
FatI CATG 4 cut(s) 100, 205, 211, 306
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 9 cut(s) 90, 149, 227, 230, 239, 242, 245, 283, 316
Fsp4HI GCNGC 9 cut(s) 90, 149, 227, 230, 239, 242, 245, 283, 316
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 252
GluI GCNGC 9 cut(s) 90, 149, 227, 230, 239, 242, 245, 283, 316
HaeII RGCGCY 1 cut(s) 254
HapII CCGG 1 cut(s) 138
HgaI GACGC 1 cut(s) 346
HhaI GCGC 1 cut(s) 253
Hin1I GRCGYC 2 cut(s) 251, 357
Hin1II CATG 4 cut(s) 104, 209, 215, 310
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HpaII CCGG 1 cut(s) 138
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 291, 300
Hpy188III TCNNGA 2 cut(s) 206, 212
Hpy8I GTNNAC 2 cut(s) 291, 300
Hpy99I CGWCG 3 cut(s) 158, 166, 188
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 2 cut(s) 186, 296
HpyCH4V TGCA 8 cut(s) 83, 104, 148, 276, 300, 384, 390, 399
HpySE526I ACGT 2 cut(s) 186, 296
Hsp92I GRCGYC 2 cut(s) 251, 357
Hsp92II CATG 4 cut(s) 104, 209, 215, 310
HspAI GCGC 1 cut(s) 251
KasI GGCGCC 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 3 cut(s) 95, 180, 208
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 3 cut(s) 160, 269, 302
LweI GCATC 1 cut(s) 333
MaeI CTAG 1 cut(s) 38
MaeII ACGT 2 cut(s) 186, 296
MalI GATC 3 cut(s) 97, 182, 210
MboI GATC 3 cut(s) 95, 180, 208
MboII GAAGA 1 cut(s) 46
MfeI CAATTG 2 cut(s) 84, 394
MflI RGATCY 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 2 cut(s) 84, 394
Mly113I GGCGCC 1 cut(s) 251
MnlI CCTC 5 cut(s) 20, 210, 213, 228, 313
MseI TTAA 2 cut(s) 191, 412
MslI CAYNNNNRTG 2 cut(s) 210, 305
MspA1I CMGCKG 2 cut(s) 226, 262
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 2 cut(s) 139, 376
MunI CAATTG 2 cut(s) 84, 394
MvaI CCWGG 1 cut(s) 376
NarI GGCGCC 1 cut(s) 251
NciI CCSGG 1 cut(s) 139
NdeII GATC 3 cut(s) 95, 180, 208
NlaIII CATG 4 cut(s) 104, 209, 215, 310
NlaIV GGNNCC 1 cut(s) 252
PagI TCATGA 2 cut(s) 205, 211
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PkrI GCNGC 9 cut(s) 91, 150, 228, 231, 240, 243, 246, 284, 317
PluTI GGCGCC 1 cut(s) 254
PmaCI CACGTG 1 cut(s) 297
PmlI CACGTG 1 cut(s) 297
Ppu21I YACGTR 1 cut(s) 297
PpuMI RGGWCCY 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 374
PspCI CACGTG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 378
PspPPI RGGWCCY 1 cut(s) 378
PstNI CAGNNNCTG 1 cut(s) 381
PsuI RGATCY 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 2 cut(s) 210, 305
SaqAI TTAA 2 cut(s) 191, 412
SatI GCNGC 9 cut(s) 90, 149, 227, 230, 239, 242, 245, 283, 316
Sau3AI GATC 3 cut(s) 95, 180, 208
Sau96I GGNCC 1 cut(s) 378
ScrFI CCNGG 2 cut(s) 139, 376
SduI GDGCHC 1 cut(s) 302
SetI ASST 8 cut(s) 12, 189, 199, 264, 299, 305, 339, 383
SfaNI GCATC 1 cut(s) 333
SfoI GGCGCC 1 cut(s) 252
SinI GGWCC 1 cut(s) 378
SmiMI CAYNNNNRTG 2 cut(s) 210, 305
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 2 cut(s) 84, 394
SsiI CCGC 7 cut(s) 60, 90, 226, 229, 238, 241, 244
SspDI GGCGCC 1 cut(s) 250
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 137, 374
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 2 cut(s) 189, 299
TaqI TCGA 1 cut(s) 183
TasI AATT 2 cut(s) 84, 394
TauI GCSGC 6 cut(s) 92, 229, 232, 241, 244, 247
Tru1I TTAA 2 cut(s) 191, 412
Tru9I TTAA 2 cut(s) 191, 412
TseI GCWGC 3 cut(s) 148, 282, 315
TspGWI ACGGA 1 cut(s) 179
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 378
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.