pycom04g15960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0014347
Physical Location & Seq
Forward (+)
18697259 .. 18697743
485 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g15960.2

Sequence Viewer

Length: 393 bp
ATGGACGACTCCACAAATAGTACCACCATAAAGTTGGTGGTTTTCTTAATCTTCATCATGGGGCTACTATTAACCATTAACCCTGCATTAGCAACTGGTGAGACGTGTGAGCCAAACCTAAAGCAATCAACAACGACGGGGACATTTCATCCCGCCGGTCCGATGGAGTATAAGCTTTTCATTGATGGCGTGACTAAACCTAATCACGATACACAACGGCGGCGACTGGCGCCATATCAGCTGTGTTTGCCGTGCAAGTGCTGCTCAGCCACCACCTGTATCTCCATGCCTTGCTGCTTCGGCATCGACTGCCAGCTCCCCAACAAACCTTTTGGAGTTTGCGCTTTTGTCCCCAAGACTTGCAACTGCACCAATTGCACAACTCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.12

Weight (kDa)

7.94

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014347)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01015 AT5G01015
fragaria_vesca FvH4_6g09130
malus_domestica MD04G1180500.v1.1 MD12G1195900.v1.1
prunus_persica Prupe.6G300400_v2.0.a1
pyrus_communis pycom04g15960 pycom12g18210
rosa_chinensis RchiOBHm_Chr3g0459341
rosa_laevigata RLG00000025089
rosa_roxburghii Rroxscaffold_6G00420250
rosa_rugosa Rorug03G0035500
rosa_samantha Rh3AG093600 Rh3BG096500 Rh3CG097700 Rh3DG097100
rosa_wichuraiana Rw3G008050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AciI CCGC 2 cut(s) 153, 220
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 104
AjiI CACGTC 1 cut(s) 105
AluBI AGCT 3 cut(s) 175, 241, 316
AluI AGCT 3 cut(s) 175, 241, 316
Alw26I GTCTC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 261, 294
AspLEI GCGC 2 cut(s) 232, 344
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 158
BanI GGYRCC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 248, 281
BccI CCATC 2 cut(s) 157, 179
BceAI ACGGC 2 cut(s) 233, 235
BcoDI GTCTC 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 233
BisI GCNGC 3 cut(s) 221, 262, 295
BlpI GCTNAGC 1 cut(s) 265
BlsI GCNGC 3 cut(s) 222, 263, 296
Bme18I GGWCC 1 cut(s) 158
BmgBI CACGTC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 265
BsaHI GRCGYC 1 cut(s) 230
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 2 cut(s) 100, 231
BseGI GGATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 2 cut(s) 100, 231
BseXI GCAGC 2 cut(s) 248, 281
BsgI GTGCAG 1 cut(s) 352
BshNI GGYRCC 1 cut(s) 229
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 2 cut(s) 154, 335
BsmAI GTCTC 1 cut(s) 95
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 154, 335
Bsp1720I GCTNAGC 1 cut(s) 265
BspACI CCGC 2 cut(s) 153, 220
BspCNI CTCAG 1 cut(s) 278
BspLI GGNNCC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 2 cut(s) 100, 231
BssAI RCCGGY 1 cut(s) 155
BssNI GRCGYC 1 cut(s) 230
BstACI GRCGYC 1 cut(s) 230
BstAPI GCANNNNNTGC 3 cut(s) 261, 309, 375
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 2 cut(s) 232, 344
BstMAI GTCTC 1 cut(s) 95
BstMWI GCNNNNNNNGC 7 cut(s) 229, 238, 247, 261, 300, 309, 375
BstV1I GCAGC 2 cut(s) 248, 281
BstXI CCANNNNNNTGG 1 cut(s) 34
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 314
CfoI GCGC 2 cut(s) 232, 344
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 158
CpoI CGGWCCG 1 cut(s) 158
Csp6I GTAC 1 cut(s) 21
CspI CGGWCCG 1 cut(s) 158
CviAII CATG 2 cut(s) 58, 286
CviJI RGCY 6 cut(s) 64, 112, 175, 241, 269, 316
CviKI_1 RGCY 6 cut(s) 64, 112, 175, 241, 269, 316
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 1 cut(s) 265
DinI GGCGCC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 158
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 2 cut(s) 61, 289
FaiI YATR 5 cut(s) 29, 59, 171, 235, 287
FaqI GGGAC 2 cut(s) 154, 335
FatI CATG 2 cut(s) 57, 285
FauI CCCGC 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 221, 262, 295
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 3 cut(s) 221, 262, 295
GlaI GCGC 2 cut(s) 231, 343
GluI GCNGC 3 cut(s) 221, 262, 295
HaeII RGCGCY 1 cut(s) 233
HapII CCGG 1 cut(s) 156
HhaI GCGC 2 cut(s) 232, 344
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 2 cut(s) 61, 289
Hin6I GCGC 2 cut(s) 230, 342
HinP1I GCGC 2 cut(s) 230, 342
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 206
Hpy99I CGWCG 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 5 cut(s) 86, 255, 363, 369, 378
HpyF10VI GCNNNNNNNGC 7 cut(s) 229, 238, 247, 261, 300, 309, 375
HpyF3I CTNAG 1 cut(s) 265
HpySE526I ACGT 1 cut(s) 104
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 2 cut(s) 61, 289
HspAI GCGC 2 cut(s) 230, 342
KasI GGCGCC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 6 cut(s) 81, 96, 169, 212, 289, 326
Lsp1109I GCAGC 2 cut(s) 248, 281
LweI GCATC 1 cut(s) 312
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 190
MboII GAAGA 1 cut(s) 43
MfeI CAATTG 1 cut(s) 373
MluCI AATT 1 cut(s) 373
Mly113I GGCGCC 1 cut(s) 230
MlyI GAGTC 1 cut(s) 2
MseI TTAA 3 cut(s) 47, 71, 78
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 373
MwoI GCNNNNNNNGC 7 cut(s) 229, 238, 247, 261, 300, 309, 375
NarI GGCGCC 1 cut(s) 230
NlaIII CATG 2 cut(s) 61, 289
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 190
PkrI GCNGC 3 cut(s) 222, 263, 296
PleI GAGTC 1 cut(s) 2
PluTI GGCGCC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 2
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
Rsr2I CGGWCCG 1 cut(s) 158
RsrII CGGWCCG 1 cut(s) 158
SaqAI TTAA 3 cut(s) 47, 71, 78
SatI GCNGC 3 cut(s) 221, 262, 295
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 2
SetI ASST 8 cut(s) 107, 120, 177, 202, 243, 278, 318, 331
SfaNI GCATC 1 cut(s) 312
SfoI GGCGCC 1 cut(s) 231
SinI GGWCC 1 cut(s) 158
Sse9I AATT 1 cut(s) 373
SsiI CCGC 2 cut(s) 153, 220
SspDI GGCGCC 1 cut(s) 229
TaiI ACGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 306
TasI AATT 1 cut(s) 373
TauI GCSGC 1 cut(s) 223
Tru1I TTAA 3 cut(s) 47, 71, 78
Tru9I TTAA 3 cut(s) 47, 71, 78
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 2 cut(s) 261, 294
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 3 cut(s) 43, 137, 169
VpaK11BI GGWCC 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 2 cut(s) 31, 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.