MD04G1191500.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0018505
Physical Location & Seq
Reverse (-)
28095089 .. 28097457
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1191500.v1.1.491

Sequence Viewer

Length: 2322 bp
ATGAATTTATACAAATTAAAGCCGCTAACTTTAGCCGCGAAATCGACTTTGAATCCCAAACCCATGTCGAAACCAAGCATAAATCTCTCGATCTTGGAAACCCATTTGCCGAAATGCCGAAATCTCAAGCAATTCAATCCAATCCTCTCTCAGATGATCCTTACCGGCTTCATCAATGACACATATGCCGCAAGCAGAATCCTCAAGTTCTGCACCGACTCACACTTCGTCCACGTCGATTTCTCCCTGAAAATCTTCGATCGAATCGACGACGCAAATGGGTTTATTTGGAACACCATGATGAGAGCTTACGTACAGAGAAACCGTCCTCAAAAGGCTTTGAAGCTTTATAAACTGATGCTGGAGAAGAATGCCGGTCCTGACCATTACACTTACCCGCTTTTAGTGCAAGCCTGCGCTATTCGGGTTTCGGGTTTTGAAGGAAAACAGATACATGATCATGTTTTCAAGACCGGTTTTGATTCGGATGTTTATGTTCAGAACACGTTGATCAATATGTATGCTGTTTGTGAGAACATGGGGGACGCACGCAAGTTGTTTGATGAAATTCCTGTGTTGAATTCGGTGGCTTGGAATTCGATTCTGGCGGGGTATGTGAGGGCAGGGGATGTGGAGAAGGCGAAGTTTGTATATGATCAGATGCCGGAGAGGAACACCATTGCTTCGAATTCTATGATCGTGTTGTTTGGCAGGACAGGTTGCGTGAATGAGGCTTGCCGGTTGTTTGAGGAAATGCCCGAGAAAGATATGGTTTCATGGAGCGCGTTGATTTCTTGTCATGAGCAGAATGAGATGTATGAGGAGGCTTTGGCTAAGTTTCTGGAAATGGTTGCCAATGGAGTTATGGTGGATGAGGTTGTGCTTGTCACTGTTCTTTCGGCATGTGCAAACTTGTTAGCTGTCCAGACAGGGAAATTGATCCATGGATTAGTAGTGAAAATTGGAACTGAAAGTTATGTCAATCTTCAAAATGCGTTTATTCACATGTATTCGAATTGTGGGGAAATAATGGCCGCGCAAAAACTGTTCAATGCAGCCTACAACTTGGATCAGATATCATGGAACTCAATGATATCAGGCTACTTGAAATGTGGTTTAGTTGAAAACGCTAGGACTTTATTTGATTCCATGCCCGAGAAGGATATCGTGTCGTGGAGTGCAATGATATCAGGTTATGCTCAACAAGACCGGTTCTCAGAAACTTTGGCATTGTTTCAGGAGATGCAGCTTCTTGGAATCAGGCCCGATGAGACCACTTTGGTGAGTGTTGTATCAGCTTGCACTCAATTGGCCGCCCTTGACTTAGGCCAGTGGATTCATGCTTATATAAGGAAAAATGGTCTCAAGATTAATGTCTTTTTGGGCACTACCCTTATAAACATGTACATGAAATGTGGGTGTGTGGAAAACGCTTTGGAGGTTTTTGAGGGGACTTCAGAAAAGGGAGTTTCTTCTTGGAATGCTCTTATTCTTGGAGATGATGAGATAACCTTTATAGGAGTTCTTGGAGCTTGTCGACACATGGGGTTAGTAAATGAGGGGCGTCGACATTTTGATTCCATGGTCCAAGAACACAAGATAGAACGCAATGTTAAGCATTACGGATGCATGGTTGATCTTTTGGGACGTGCGGGTATGCTCAAGGAGGCAGAGGAACTCATTGAGAGTATGCCTATGATGCCGGATGTTGCTACTTGGGGTGCCTTACTAGGGGCATGTAAGAAACACGGAGACCATGATAGGGGCGAGAGGATAGGAAGAAAGCTCATTGAGCTTGAGCCTGACCATGACGGGTTCCACGTATTGTTGTCCAATATATGTGCTTCAAAAGGTAACTGGGATGATGTTCATGAGATTAGGGGAACAATGATGCAACATGGGGTGGTAAAGACCCCGGGTTGTAGCATGATTGAAGCAGACGGAGTAGTTCATGAATTTCTAGCAGGAGATAAGAAACACCCTCGAATAAAAGAGATTGACGCTATGTTGGATGAAATAGCTAAGAGATTGAAGAAGGAAGGTTACGCACCAGATACGAATGAGGTTTCCTTTGACATTGATGAAGAAGAGAAGGAAACCGCTCTGTCCAGGCATAGTGAGAAACTTGCAATTGCCTTTGGTCTTATCGCTATCAGTCCACCATCACCTATACGAATAATGAAGAATTTGCGAATATGTAATGATTGTCACATGGCAGCAAAGTTGATCTCAAAAGCTTTTGATCGTGATATAGTGGTGAGGGATCGGCACCTCTTTCACCACTTTAAGCAGGGATCTTGCTCTTGCAATGATTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

774

Amino Acids

86.93

Weight (kDa)

6.05

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 95 - 140 2.8e-11 PPR repeat family
PPR PF01535 96 - 124 1.2e-06 PPR repeat
PPR_2 PF13041 194 - 225 5.8e-06 PPR repeat family
PPR PF01535 196 - 225 6e-06 PPR repeat
PPR PF01535 359 - 389 9e-08 PPR repeat
PPR_2 PF13041 387 - 434 7e-09 PPR repeat family
PPR PF01535 390 - 420 5e-06 PPR repeat
E_motif PF20431 583 - 645 5.9e-15 E motif
Eplus_motif PF20430 650 - 677 1.8e-08 E+ motif
DYW_deaminase PF14432 681 - 773 8.5e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018505)

Species Orthologous Gene IDs
malus_domestica MD04G1191500.v1.1
prunus_persica Prupe.6G310100_v2.0.a1
pyrus_communis pycom04g16910
rosa_chinensis RchiOBHm_Chr3g0457551
rosa_laevigata RLG00000025211
rosa_multiflora Rmu_sc0007404.1_g000005
rosa_roxburghii Rroxscaffold_6G00421740
rosa_rugosa Rorug03G0021300
rosa_samantha Rh3DG085600
rosa_wichuraiana Rw3G007030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 351, 1397
AccB1I GGYRCC 2 cut(s) 1721, 2268
AccBSI CCGCTC 1 cut(s) 2102
AccI GTMKAC 2 cut(s) 1537, 1567
AccII CGCG 3 cut(s) 38, 785, 1037
AciI CCGC 9 cut(s) 23, 36, 189, 398, 608, 1035, 1314, 1652, 2100
AclWI GGATC 5 cut(s) 151, 934, 1077, 2271, 2302
AcoI YGGCCR 2 cut(s) 1032, 1311
AcsI RAATTY 7 cut(s) 4, 567, 580, 595, 688, 1955, 2185
AcuI CTGAAG 1 cut(s) 1440
AcyI GRCGYC 1 cut(s) 1564
AfaI GTAC 2 cut(s) 315, 1406
AfiI CCNNNNNNNGG 2 cut(s) 1731, 1762
AflIII ACRYGT 3 cut(s) 504, 1005, 1401
AgeI ACCGGT 2 cut(s) 473, 1209
AjiI CACGTC 2 cut(s) 235, 1649
AjnI CCWGG 1 cut(s) 2108
AleI CACNNNNGTG 1 cut(s) 1280
Alw26I GTCTC 3 cut(s) 1265, 1367, 1746
AlwI GGATC 5 cut(s) 151, 934, 1077, 2271, 2302
Ama87I CYCGRG 3 cut(s) 758, 1154, 1915
AoxI GGCC 4 cut(s) 1032, 1262, 1311, 1327
ApeKI GCWGC 3 cut(s) 1055, 1246, 2216
ApoI RAATTY 7 cut(s) 4, 567, 580, 595, 688, 1955, 2185
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AseI ATTAAT 1 cut(s) 1371
AsiGI ACCGGT 2 cut(s) 473, 1209
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 3 cut(s) 419, 785, 1039
AspS9I GGNCC 3 cut(s) 377, 1263, 1585
AsuC2I CCSGG 2 cut(s) 1916, 1917
AsuHPI GGTGA 4 cut(s) 1294, 2157, 2269, 2270
AsuII TTCGAA 2 cut(s) 686, 1013
AvaI CYCGRG 3 cut(s) 758, 1154, 1915
AvaII GGWCC 2 cut(s) 377, 1585
BaeGI GKGCMC 1 cut(s) 1388
BanI GGYRCC 2 cut(s) 1721, 2268
BarI GAAGNNNNNNTAC 2 cut(s) 2027, 2059
BbvI GCAGC 3 cut(s) 1067, 1258, 2228
BccI CCATC 1 cut(s) 2170
BciT130I CCWGG 1 cut(s) 2110
BclI TGATCA 3 cut(s) 457, 510, 655
BcnI CCSGG 2 cut(s) 1916, 1917
BcoDI GTCTC 3 cut(s) 1265, 1367, 1746
BfaI CTAG 3 cut(s) 1131, 1730, 1961
BisI GCNGC 8 cut(s) 23, 36, 189, 1035, 1056, 1247, 1314, 2217
BlsI GCNGC 8 cut(s) 24, 37, 190, 1036, 1057, 1248, 1315, 2218
Bme1390I CCNGG 3 cut(s) 1916, 1917, 2110
Bme18I GGWCC 2 cut(s) 377, 1585
BmeT110I CYCGRG 3 cut(s) 758, 1154, 1915
BmgBI CACGTC 2 cut(s) 235, 1649
BmgT120I GGNCC 3 cut(s) 377, 1263, 1585
BmiI GGNNCC 3 cut(s) 1723, 1817, 2270
BmrFI CCNGG 3 cut(s) 1916, 1917, 2110
BmrI ACTGGG 1 cut(s) 1867
BmsI GCATC 6 cut(s) 348, 651, 1233, 1616, 1689, 1881
BmuI ACTGGG 1 cut(s) 1867
BpmI CTGGAG 1 cut(s) 383
Bpu14I TTCGAA 2 cut(s) 686, 1013
BpuEI CTTGAG 5 cut(s) 110, 188, 1349, 1646, 1817
BpuMI CCSGG 2 cut(s) 1916, 1917
BsaAI YACGTR 2 cut(s) 313, 1822
BsaHI GRCGYC 1 cut(s) 1564
BsaI GGTCTC 3 cut(s) 1265, 1367, 1746
BsaJI CCNNGG 4 cut(s) 943, 1581, 1914, 1915
BsaWI WCCGGW 2 cut(s) 473, 1209
BsaXI ACNNNNNCTCC 2 cut(s) 852, 882
Bsc4I CCNNNNNNNGG 2 cut(s) 1731, 1762
Bse118I RCCGGY 5 cut(s) 164, 374, 473, 738, 1209
Bse1I ACTGG 2 cut(s) 1330, 1862
Bse3DI GCAATG 4 cut(s) 678, 1188, 1615, 2314
BseBI CCWGG 1 cut(s) 2110
BseDI CCNNGG 4 cut(s) 943, 1581, 1914, 1915
BseGI GGATG 7 cut(s) 493, 634, 877, 1631, 1711, 1867, 2017
BseLI CCNNNNNNNGG 2 cut(s) 1731, 1762
BseMI GCAATG 4 cut(s) 678, 1188, 1615, 2314
BseMII CTCAG 2 cut(s) 164, 1230
BseNI ACTGG 2 cut(s) 1330, 1862
BseRI GAGGAG 1 cut(s) 836
BseSI GKGCMC 1 cut(s) 1388
BseXI GCAGC 3 cut(s) 1067, 1258, 2228
BsgI GTGCAG 1 cut(s) 196
Bsh1236I CGCG 3 cut(s) 38, 785, 1037
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 4 cut(s) 1034, 1264, 1313, 1329
BshNI GGYRCC 2 cut(s) 1721, 2268
BshTI ACCGGT 2 cut(s) 473, 1209
BsiEI CGRYCG 1 cut(s) 262
BsiHKCI CYCGRG 3 cut(s) 758, 1154, 1915
BsiSI CCGG 8 cut(s) 165, 375, 474, 665, 739, 1210, 1703, 1916
BslFI GGGAC 3 cut(s) 557, 1465, 1659
BslI CCNNNNNNNGG 2 cut(s) 1731, 1762
BsmAI GTCTC 3 cut(s) 1265, 1367, 1746
BsmFI GGGAC 3 cut(s) 557, 1465, 1659
BsmI GAATGC 2 cut(s) 376, 1486
BsnI GGCC 4 cut(s) 1034, 1264, 1313, 1329
Bso31I GGTCTC 3 cut(s) 1265, 1367, 1746
BsoBI CYCGRG 3 cut(s) 758, 1154, 1915
Bsp119I TTCGAA 2 cut(s) 686, 1013
Bsp1286I GDGCHC 1 cut(s) 1388
Bsp1407I TGTACA 1 cut(s) 1404
Bsp19I CCATGG 2 cut(s) 943, 1581
BspACI CCGC 9 cut(s) 23, 36, 189, 398, 608, 1035, 1314, 1652, 2100
BspANI GGCC 4 cut(s) 1034, 1264, 1313, 1329
BspCNI CTCAG 2 cut(s) 163, 1229
BspFNI CGCG 3 cut(s) 38, 785, 1037
BspHI TCATGA 3 cut(s) 799, 1870, 1951
BspLI GGNNCC 3 cut(s) 1723, 1817, 2270
BspPI GGATC 5 cut(s) 151, 934, 1077, 2271, 2302
BspT104I TTCGAA 2 cut(s) 686, 1013
BspT107I GGYRCC 2 cut(s) 1721, 2268
BspTNI GGTCTC 3 cut(s) 1265, 1367, 1746
BsrBI CCGCTC 1 cut(s) 2102
BsrDI GCAATG 4 cut(s) 678, 1188, 1615, 2314
BsrFI RCCGGY 5 cut(s) 164, 374, 473, 738, 1209
BsrGI TGTACA 1 cut(s) 1404
BsrI ACTGG 2 cut(s) 1330, 1862
BssAI RCCGGY 5 cut(s) 164, 374, 473, 738, 1209
BssECI CCNNGG 4 cut(s) 943, 1581, 1914, 1915
BssNI GRCGYC 1 cut(s) 1564
BssT1I CCWWGG 2 cut(s) 943, 1581
Bst2UI CCWGG 1 cut(s) 2110
Bst4CI ACNGT 3 cut(s) 326, 892, 1047
Bst6I CTCTTC 1 cut(s) 2082
BstACI GRCGYC 1 cut(s) 1564
BstAUI TGTACA 1 cut(s) 1404
BstBAI YACGTR 2 cut(s) 313, 1822
BstBI TTCGAA 2 cut(s) 686, 1013
BstC8I GCNNGC 6 cut(s) 193, 411, 415, 550, 736, 1300
BstDEI CTNAG 5 cut(s) 150, 834, 1216, 1324, 2022
BstDSI CCRYGG 2 cut(s) 943, 1581
BstF5I GGATG 7 cut(s) 493, 634, 877, 1631, 1711, 1867, 2017
BstFNI CGCG 3 cut(s) 38, 785, 1037
BstHHI GCGC 3 cut(s) 419, 785, 1039
BstMAI GTCTC 3 cut(s) 1265, 1367, 1746
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 3 cut(s) 406, 1699, 1792
BstNI CCWGG 1 cut(s) 2110
BstNSI RCATGY 4 cut(s) 906, 1009, 1405, 1740
BstSCI CCNGG 3 cut(s) 1914, 1915, 2108
BstSLI GKGCMC 1 cut(s) 1388
BstSNI TACGTA 1 cut(s) 313
BstUI CGCG 3 cut(s) 38, 785, 1037
BstV1I GCAGC 3 cut(s) 1067, 1258, 2228
BstX2I RGATCY 1 cut(s) 2294
BstYI RGATCY 1 cut(s) 2294
BsuRI GGCC 4 cut(s) 1034, 1264, 1313, 1329
BtgI CCRYGG 2 cut(s) 943, 1581
BtrI CACGTC 2 cut(s) 235, 1649
BtsCI GGATG 7 cut(s) 493, 634, 877, 1631, 1711, 1867, 2017
BtsIMutI CAGTG 2 cut(s) 888, 1337
Cac8I GCNNGC 6 cut(s) 193, 411, 415, 550, 736, 1300
CciI TCATGA 3 cut(s) 799, 1870, 1951
CfoI GCGC 3 cut(s) 419, 785, 1039
Cfr10I RCCGGY 5 cut(s) 164, 374, 473, 738, 1209
Cfr13I GGNCC 3 cut(s) 377, 1263, 1585
Cfr9I CCCGGG 1 cut(s) 1915
CseI GACGC 4 cut(s) 281, 554, 1553, 2009
Csp6I GTAC 2 cut(s) 314, 1405
CspAI ACCGGT 2 cut(s) 473, 1209
CviQI GTAC 2 cut(s) 314, 1405
DdeI CTNAG 5 cut(s) 150, 834, 1216, 1324, 2022
EaeI YGGCCR 2 cut(s) 1032, 1311
Eam1104I CTCTTC 1 cut(s) 2082
EarI CTCTTC 1 cut(s) 2082
Eco105I TACGTA 1 cut(s) 313
Eco130I CCWWGG 2 cut(s) 943, 1581
Eco31I GGTCTC 3 cut(s) 1265, 1367, 1746
Eco32I GATATC 4 cut(s) 1077, 1095, 1165, 1188
Eco47I GGWCC 2 cut(s) 377, 1585
Eco57I CTGAAG 1 cut(s) 1440
Eco88I CYCGRG 3 cut(s) 758, 1154, 1915
EcoRI GAATTC 3 cut(s) 580, 595, 688
EcoRII CCWGG 1 cut(s) 2108
EcoRV GATATC 4 cut(s) 1077, 1095, 1165, 1188
EcoT14I CCWWGG 2 cut(s) 943, 1581
EcoT22I ATGCAT 1 cut(s) 1631
ErhI CCWWGG 2 cut(s) 943, 1581
FaqI GGGAC 3 cut(s) 557, 1465, 1659
FauI CCCGC 3 cut(s) 405, 601, 1645
FauNDI CATATG 1 cut(s) 184
FbaI TGATCA 3 cut(s) 457, 510, 655
FblI GTMKAC 2 cut(s) 1537, 1567
Fnu4HI GCNGC 8 cut(s) 23, 36, 189, 1035, 1056, 1247, 1314, 2217
FokI GGATG 7 cut(s) 500, 641, 884, 1638, 1718, 1874, 2024
Fsp4HI GCNGC 8 cut(s) 23, 36, 189, 1035, 1056, 1247, 1314, 2217
FspBI CTAG 3 cut(s) 1131, 1730, 1961
GlaI GCGC 3 cut(s) 418, 784, 1038
GluI GCNGC 8 cut(s) 23, 36, 189, 1035, 1056, 1247, 1314, 2217
GsuI CTGGAG 1 cut(s) 383
HaeIII GGCC 4 cut(s) 1034, 1264, 1313, 1329
HapII CCGG 8 cut(s) 165, 375, 474, 665, 739, 1210, 1703, 1916
HgaI GACGC 4 cut(s) 281, 554, 1553, 2009
HhaI GCGC 3 cut(s) 419, 785, 1039
Hin1I GRCGYC 1 cut(s) 1564
Hin6I GCGC 3 cut(s) 417, 783, 1037
HinP1I GCGC 3 cut(s) 417, 783, 1037
HincII GTYRAC 2 cut(s) 1538, 1568
HindII GTYRAC 2 cut(s) 1538, 1568
HindIII AAGCTT 2 cut(s) 344, 2235
HpaII CCGG 8 cut(s) 165, 375, 474, 665, 739, 1210, 1703, 1916
HphI GGTGA 4 cut(s) 1294, 2157, 2269, 2270
Hpy166II GTNNAC 4 cut(s) 232, 1538, 1568, 2159
Hpy188I TCNGA 7 cut(s) 153, 487, 501, 660, 1074, 1219, 1459
Hpy8I GTNNAC 4 cut(s) 232, 1538, 1568, 2159
Hpy99I CGWCG 4 cut(s) 239, 272, 275, 1569
HpyAV CCTTC 6 cut(s) 434, 631, 1153, 2029, 2033, 2086
HpyCH4III ACNGT 3 cut(s) 326, 892, 1047
HpyCH4IV ACGT 5 cut(s) 234, 312, 506, 1648, 1821
HpyF10VI GCNNNNNNNGC 3 cut(s) 406, 1699, 1792
HpyF3I CTNAG 5 cut(s) 150, 834, 1216, 1324, 2022
HpySE526I ACGT 5 cut(s) 234, 312, 506, 1648, 1821
Hsp92I GRCGYC 1 cut(s) 1564
HspAI GCGC 3 cut(s) 417, 783, 1037
Ksp22I TGATCA 3 cut(s) 457, 510, 655
LmnI GCTCC 2 cut(s) 780, 1529
Lsp1109I GCAGC 3 cut(s) 1067, 1258, 2228
LweI GCATC 6 cut(s) 348, 651, 1233, 1616, 1689, 1881
MaeI CTAG 3 cut(s) 1131, 1730, 1961
MaeII ACGT 5 cut(s) 234, 312, 506, 1648, 1821
MaeIII GTNAC 4 cut(s) 886, 1853, 2042, 2207
MbiI CCGCTC 1 cut(s) 2102
MboII GAAGA 9 cut(s) 247, 379, 977, 1464, 1791, 2044, 2096, 2099, 2194
MfeI CAATTG 2 cut(s) 1307, 2130
MflI RGATCY 1 cut(s) 2294
MhlI GDGCHC 1 cut(s) 1388
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 1989
Mph1103I ATGCAT 1 cut(s) 1631
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 4 cut(s) 17, 1371, 1614, 2286
MslI CAYNNNNRTG 4 cut(s) 299, 459, 1280, 1406
MspI CCGG 8 cut(s) 165, 375, 474, 665, 739, 1210, 1703, 1916
MspR9I CCNGG 3 cut(s) 1916, 1917, 2110
MunI CAATTG 2 cut(s) 1307, 2130
Mva1269I GAATGC 2 cut(s) 376, 1486
MvaI CCWGG 1 cut(s) 2110
MvnI CGCG 3 cut(s) 38, 785, 1037
MwoI GCNNNNNNNGC 3 cut(s) 406, 1699, 1792
NciI CCSGG 2 cut(s) 1916, 1917
NcoI CCATGG 2 cut(s) 943, 1581
NdeI CATATG 1 cut(s) 184
NlaIV GGNNCC 3 cut(s) 1723, 1817, 2270
NmuCI GTSAC 2 cut(s) 886, 2207
NsiI ATGCAT 1 cut(s) 1631
NspI RCATGY 4 cut(s) 906, 1009, 1405, 1740
NspV TTCGAA 2 cut(s) 686, 1013
OliI CACNNNNGTG 1 cut(s) 1280
PagI TCATGA 3 cut(s) 799, 1870, 1951
PciI ACATGT 2 cut(s) 1005, 1401
PcsI WCGNNNNNNNCGW 3 cut(s) 234, 264, 1818
PctI GAATGC 2 cut(s) 376, 1486
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 9 cut(s) 52, 198, 264, 482, 601, 1145, 1257, 1336, 1577
PinAI ACCGGT 2 cut(s) 473, 1209
PkrI GCNGC 8 cut(s) 24, 37, 190, 1036, 1057, 1248, 1315, 2218
Ple19I CGATCG 1 cut(s) 262
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Ppu21I YACGTR 2 cut(s) 313, 1822
PscI ACATGT 2 cut(s) 1005, 1401
PshBI ATTAAT 1 cut(s) 1371
PsiI TTATAA 2 cut(s) 351, 1397
Psp6I CCWGG 1 cut(s) 2108
PspGI CCWGG 1 cut(s) 2108
PspN4I GGNNCC 3 cut(s) 1723, 1817, 2270
PspPI GGNCC 3 cut(s) 377, 1263, 1585
PsuI RGATCY 1 cut(s) 2294
PvuI CGATCG 1 cut(s) 262
RsaI GTAC 2 cut(s) 315, 1406
RsaNI GTAC 2 cut(s) 314, 1405
RseI CAYNNNNRTG 4 cut(s) 299, 459, 1280, 1406
SalI GTCGAC 2 cut(s) 1536, 1566
SaqAI TTAA 4 cut(s) 17, 1371, 1614, 2286
SatI GCNGC 8 cut(s) 23, 36, 189, 1035, 1056, 1247, 1314, 2217
Sau96I GGNCC 3 cut(s) 377, 1263, 1585
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 3 cut(s) 1916, 1917, 2110
SduI GDGCHC 1 cut(s) 1388
SfaNI GCATC 6 cut(s) 348, 651, 1233, 1616, 1689, 1881
SfuI TTCGAA 2 cut(s) 686, 1013
SinI GGWCC 2 cut(s) 377, 1585
SmaI CCCGGG 1 cut(s) 1917
SmiMI CAYNNNNRTG 4 cut(s) 299, 459, 1280, 1406
SmlI CTYRAG 5 cut(s) 125, 203, 1364, 1661, 1796
SmoI CTYRAG 5 cut(s) 125, 203, 1364, 1661, 1796
SnaBI TACGTA 1 cut(s) 313
SsiI CCGC 9 cut(s) 23, 36, 189, 398, 608, 1035, 1314, 1652, 2100
SspMI CTAG 3 cut(s) 1131, 1730, 1961
StyD4I CCNGG 3 cut(s) 1914, 1915, 2108
StyI CCWWGG 2 cut(s) 943, 1581
TaaI ACNGT 3 cut(s) 326, 892, 1047
TaiI ACGT 5 cut(s) 237, 315, 509, 1651, 1824
TatI WGTACW 1 cut(s) 1404
TauI GCSGC 5 cut(s) 25, 38, 191, 1037, 1316
TfiI GAWTC 9 cut(s) 52, 198, 264, 482, 601, 1145, 1257, 1336, 1577
Tru1I TTAA 4 cut(s) 17, 1371, 1614, 2286
Tru9I TTAA 4 cut(s) 17, 1371, 1614, 2286
TscAI CASTG 2 cut(s) 895, 1337
TseFI GTSAC 2 cut(s) 886, 2207
TseI GCWGC 3 cut(s) 1055, 1246, 2216
Tsp45I GTSAC 2 cut(s) 886, 2207
TspGWI ACGGA 3 cut(s) 1638, 1764, 1956
TspMI CCCGGG 1 cut(s) 1915
TspRI CASTG 2 cut(s) 895, 1337
VpaK11BI GGWCC 2 cut(s) 377, 1585
VspI ATTAAT 1 cut(s) 1371
XapI RAATTY 7 cut(s) 4, 567, 580, 595, 688, 1955, 2185
XceI RCATGY 4 cut(s) 906, 1009, 1405, 1740
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XmaI CCCGGG 1 cut(s) 1915
XmiI GTMKAC 2 cut(s) 1537, 1567
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 3 cut(s) 1131, 1730, 1961
Zsp2I ATGCAT 1 cut(s) 1631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.