RchiOBHm_Chr3g0457551

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018505
Physical Location & Seq
Forward (+)
6625429 .. 6628431
3003 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42430

Sequence Viewer

Length: 2409 bp
ATGGGTTTGCCTTCAAAGTCCAAACCTTTGCAGTTGAAACACTTCATGTCCTCTTCAAAGTTCAAACCTTTAGCTATGAACTTGGGTAGATTGACCATAAACTTGTCAATTTTAGAAACCCATTTGCCCAAATGCAAGAATCTCAAGCAGTTCAATCAAATACTATCTCAGATGATCCTCACTGGTTTCATTAGGGACACATATGCTGCAAGTAGAGTCCTCAAGTTCTCCACTGACTCTTCTTTGAGTGACATTGATTTGTCATTAAGAATTTTCAACCACATTGAGAACTCAAATGGGTTCATTTGGAACACTATGATGAAAGCTTATATACAAAGAAGCTGTCCCCAAAAGACTTTGAGTCTTTACAAATTGATGTTGGGTAAGAATGGGGATAGAGATAATTATACATACCCAATCCTAGTTCAAGCTTGTGCTATGAGAGCATCAGAGTTTGAAGGGAAACAGATGCATAGTCATATTTTGAAGTTTGGGTTTGATTCAGATGTGTATGTGCAGAACACATTGATCAACATGTACTCAGTTTGTGACAATATGAGGGATGCACGCAATGTGTTTGATGAAATGCCTGTGTTGGATTCGGTGGCGTGGAATTCGATATTGGCTGGCTATGTTAGGGTGGGGGATGTAAAGCAGGCTAAGTGTATATATGATCAGATGCCAGTGAGGAACACGATTGCTTCGAATTCTATGATTGTGTTGTTTGGTAAAAGAGGTTGTGTGACTGAGGCTCGGCATTTGTTTGATGAACTGCCTGAGAAGGATATGGTTTCGTGGAGCGCGTTGATTTCTTGTTTCGAGCAAAATGAGATGTATGAGGAGGCTTTGGATATGTTTGTGAAAATGGTTGCTAATGGAGTTATGGTGGATGAGGTTGTGGTGGTTAGTGTGCTTTCGGCATGTGCACATTTGTCAGCTGTTCACACAGGGAAGTTGATCCATGGGTTAGTTGTGAAAATTGGAATTGAAAGTTATGTTAATCTTCAAAATGCTTTTATTCATATGTATTCCAGTTGTGGGGAGATAATGGTTGCCGAGAAACTGTTCAATGCAGCCTACAACCTGGATCAGATATCTTGGAACTCAATGATATCGGGGTACTTGAGATGTGGTTTAGTTGAAGCTGCTAAGACATCATTTGATTCCATGCCTGAGAAGGATGTAGTGTCTTGGAGTGCAATGATATCAGGCTATGCTCAGCATGACCGGTTTTCAGAAACTTTGGCATTGTTCCAGGAGATGCAGCTGTGTGGAATTAGGCCCGATGAGACCACTTTGGTGAGCGTCATCTCGGCTTGCACTCATTTGGCTGCCCTTGACCTGGGCCAATGGATTCATGCTTATATAAGGAAAAATAGCCTTAAAGTTAATGTCTTTCTTGGGACAACCCTTATTAACATGTACTTGAAATGTGGGTGTGTGGAAAATGCATTGGAGGTTTTCGAGGAGACAGCAGAAAAGGGAGTTTCTACTTGGAATGCTCTTATTCTTGGGTTGGCAATGAATGGGTTGGTGGAGAAGTCGCTTGAAATGTTTGCAAAGATGAAGACAAGGGGTGTGACACCTAATGAAATAACCTTTATGGGAGTTATTGGAGCTTGTCGTCACATGGGCTTGGTAGATGAGGGGCGTCGCCACTTCGATTCCATGATGCAGGAACACAAGATAGAACCCAATGTTAAGCATTACGGATGCATGGTTGATCTTCTTGGACGTGCTGGTATGCTCAAGGAGGCAGAGGACCTCATTGAAAGTATGCCTATGACACCAGATGTTGCTACTTGGGGTGCCTTACTGGGGGCTTGTAAGAAACATGGGGACCATGACAGGGGTGAGAGGATAGGAAGAAAGCTCATTGAGCTCGATCCTAACCATGATGGGTTCCATGTGTTGTTGTCCAATATATGTGCTTCGAAAGGTGATTGGGATGGTGTTCATGAGATTAGGGGAATAATGATGCAACATGGGGTGGTAAAGACCCCAGGTTGTAGCATGATCGAAGCAGATGGTGTAGTTCATGAATTTCTAGCAGGAGATAAGAAACACCCTCGAATGAAAGATATTGAGGTTATGCTAGATGAAATGGCTCAGAAATTGAAGAGGGAAGGTTATGCACCAGATACAAATGAGGTATCCTTTGACATTGATGAAGAGGAAAAGGAAACTGTTCTTTTCAGACACAGTGAGAAACTGGCAATTGCCTTTGGGCTAATCGCTATCAGTCCACCATCACCAATACGAATAATAAAGAATTTGCGAATATGTAACGATTGTCACATGGCAGCAAAGTTCGTCTCGAAAGCTTTTGGTCGTGACATTGTGGTGAGGGATAAGCACCGCTTTCACCACTTTAAGCAGGGATCTTGTTCCTGCAATGACTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

802

Amino Acids

90.18

Weight (kDa)

6.38

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 101 - 146 1.1e-06 PPR repeat family
PPR_2 PF13041 262 - 310 6e-06 PPR repeat family
PPR PF01535 264 - 294 2.1e-06 PPR repeat
PPR PF01535 365 - 394 8.3e-06 PPR repeat
PPR_2 PF13041 393 - 441 7.5e-10 PPR repeat family
PPR PF01535 396 - 426 9e-07 PPR repeat
PPR_2 PF13041 495 - 541 3.4e-10 PPR repeat family
PPR PF01535 497 - 527 1.2e-06 PPR repeat
E_motif PF20431 612 - 674 2.2e-13 E motif
DYW_deaminase PF14432 710 - 802 2.8e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018505)

Species Orthologous Gene IDs
malus_domestica MD04G1191500.v1.1
prunus_persica Prupe.6G310100_v2.0.a1
pyrus_communis pycom04g16910
rosa_chinensis RchiOBHm_Chr3g0457551
rosa_laevigata RLG00000025211
rosa_multiflora Rmu_sc0007404.1_g000005
rosa_roxburghii Rroxscaffold_6G00421740
rosa_rugosa Rorug03G0021300
rosa_samantha Rh3DG085600
rosa_wichuraiana Rw3G007030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1808
AccII CGCG 1 cut(s) 803
AciI CCGC 1 cut(s) 2359
AclWI GGATC 5 cut(s) 169, 952, 1095, 1880, 2389
AcsI RAATTY 5 cut(s) 270, 613, 706, 2042, 2272
AcyI GRCGYC 1 cut(s) 1651
AfaI GTAC 3 cut(s) 539, 1121, 1424
AfiI CCNNNNNNNGG 4 cut(s) 1038, 1342, 1818, 1849
AflIII ACRYGT 2 cut(s) 534, 1419
AgeI ACCGGT 1 cut(s) 1227
AhdI GACNNNNNGTC 1 cut(s) 360
AjiI CACGTC 1 cut(s) 1736
AjnI CCWGG 4 cut(s) 1083, 1254, 1341, 2002
AjuI GAANNNNNNNTTGG 2 cut(s) 605, 637
AleI CACNNNNGTG 1 cut(s) 1298
Alw21I GWGCWC 2 cut(s) 928, 1884
Alw26I GTCTC 3 cut(s) 1283, 1463, 2320
Alw44I GTGCAC 1 cut(s) 924
AlwI GGATC 5 cut(s) 169, 952, 1095, 1880, 2389
AoxI GGCC 2 cut(s) 1280, 1345
ApaLI GTGCAC 1 cut(s) 924
ApeKI GCWGC 6 cut(s) 206, 1073, 1145, 1264, 1331, 2303
ApoI RAATTY 5 cut(s) 270, 613, 706, 2042, 2272
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AsiGI ACCGGT 1 cut(s) 1227
Asp700I GAANNNNTTC 3 cut(s) 41, 1064, 2187
AspLEI GCGC 1 cut(s) 803
AspS9I GGNCC 4 cut(s) 1281, 1345, 1762, 1840
AsuHPI GGTGA 6 cut(s) 1312, 1865, 1952, 2244, 2356, 2357
AsuII TTCGAA 2 cut(s) 704, 1934
AvaII GGWCC 2 cut(s) 1762, 1840
BaeGI GKGCMC 1 cut(s) 928
BanI GGYRCC 1 cut(s) 1808
BanII GRGCYC 1 cut(s) 1884
BbsI GAAGAC 1 cut(s) 1574
Bbv12I GWGCWC 2 cut(s) 928, 1884
BbvI GCAGC 6 cut(s) 193, 1085, 1132, 1276, 1318, 2315
BccI CCATC 4 cut(s) 1892, 1943, 2021, 2257
BciT130I CCWGG 4 cut(s) 1085, 1256, 1343, 2004
BciVI GTATCC 1 cut(s) 2164
BclI TGATCA 2 cut(s) 528, 673
BcoDI GTCTC 3 cut(s) 1283, 1463, 2320
BfaI CTAG 3 cut(s) 422, 2048, 2096
BfuI GTATCC 1 cut(s) 2164
BisI GCNGC 6 cut(s) 207, 1074, 1146, 1265, 1332, 2304
BlpI GCTNAGC 1 cut(s) 1218
BlsI GCNGC 6 cut(s) 208, 1075, 1147, 1266, 1333, 2305
Bme1390I CCNGG 4 cut(s) 1085, 1256, 1343, 2004
Bme18I GGWCC 2 cut(s) 1762, 1840
BmeRI GACNNNNNGTC 1 cut(s) 360
BmgBI CACGTC 1 cut(s) 1736
BmgT120I GGNCC 4 cut(s) 1281, 1345, 1762, 1840
BmiI GGNNCC 3 cut(s) 1810, 1841, 1904
BmrFI CCNGG 4 cut(s) 1085, 1256, 1343, 2004
BmrI ACTGGG 1 cut(s) 1826
BmsI GCATC 8 cut(s) 455, 459, 553, 669, 1251, 1662, 1703, 1968
BmuI ACTGGG 1 cut(s) 1826
BpiI GAAGAC 1 cut(s) 1574
Bpu1102I GCTNAGC 1 cut(s) 1218
Bpu14I TTCGAA 2 cut(s) 704, 1934
BpuEI CTTGAG 4 cut(s) 128, 206, 1144, 1733
BsaHI GRCGYC 1 cut(s) 1651
BsaI GGTCTC 1 cut(s) 1283
BsaJI CCNNGG 3 cut(s) 961, 1342, 2002
BsaWI WCCGGW 1 cut(s) 1227
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 4 cut(s) 1038, 1342, 1818, 1849
Bse118I RCCGGY 1 cut(s) 1227
Bse1I ACTGG 5 cut(s) 187, 683, 1032, 1821, 2217
Bse3DI GCAATG 4 cut(s) 577, 1206, 1527, 2401
BseBI CCWGG 4 cut(s) 1085, 1256, 1343, 2004
BseDI CCNNGG 3 cut(s) 961, 1342, 2002
BseGI GGATG 6 cut(s) 568, 652, 895, 1186, 1718, 1954
BseLI CCNNNNNNNGG 4 cut(s) 1038, 1342, 1818, 1849
BseMI GCAATG 4 cut(s) 577, 1206, 1527, 2401
BseMII CTCAG 7 cut(s) 182, 555, 738, 768, 1164, 1232, 2123
BseNI ACTGG 5 cut(s) 187, 683, 1032, 1821, 2217
BseRI GAGGAG 2 cut(s) 854, 1481
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 6 cut(s) 193, 1085, 1132, 1276, 1318, 2315
BsgI GTGCAG 1 cut(s) 536
Bsh1236I CGCG 1 cut(s) 803
BshFI GGCC 2 cut(s) 1282, 1347
BshNI GGYRCC 1 cut(s) 1808
BshTI ACCGGT 1 cut(s) 1227
BsiHKAI GWGCWC 2 cut(s) 928, 1884
BsiSI CCGG 1 cut(s) 1228
BslFI GGGAC 4 cut(s) 209, 330, 1417, 1853
BslI CCNNNNNNNGG 4 cut(s) 1038, 1342, 1818, 1849
BsmAI GTCTC 3 cut(s) 1283, 1463, 2320
BsmBI CGTCTC 1 cut(s) 2320
BsmFI GGGAC 4 cut(s) 209, 330, 1417, 1853
BsmI GAATGC 1 cut(s) 1504
BsnI GGCC 2 cut(s) 1282, 1347
Bso31I GGTCTC 1 cut(s) 1283
Bsp119I TTCGAA 2 cut(s) 704, 1934
Bsp1286I GDGCHC 2 cut(s) 928, 1884
Bsp143I GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
Bsp1720I GCTNAGC 1 cut(s) 1218
Bsp19I CCATGG 1 cut(s) 961
BspACI CCGC 1 cut(s) 2359
BspANI GGCC 2 cut(s) 1282, 1347
BspCNI CTCAG 7 cut(s) 181, 554, 739, 769, 1165, 1231, 2122
BspFNI CGCG 1 cut(s) 803
BspHI TCATGA 2 cut(s) 1957, 2038
BspLI GGNNCC 3 cut(s) 1810, 1841, 1904
BspPI GGATC 5 cut(s) 169, 952, 1095, 1880, 2389
BspT104I TTCGAA 2 cut(s) 704, 1934
BspT107I GGYRCC 1 cut(s) 1808
BspTNI GGTCTC 1 cut(s) 1283
BsrDI GCAATG 4 cut(s) 577, 1206, 1527, 2401
BsrFI RCCGGY 1 cut(s) 1227
BsrI ACTGG 5 cut(s) 187, 683, 1032, 1821, 2217
BssAI RCCGGY 1 cut(s) 1227
BssECI CCNNGG 3 cut(s) 961, 1342, 2002
BssMI GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
BssNI GRCGYC 1 cut(s) 1651
BssT1I CCWWGG 1 cut(s) 961
Bst2UI CCWGG 4 cut(s) 1085, 1256, 1343, 2004
Bst4CI ACNGT 3 cut(s) 1065, 2188, 2204
Bst6I CTCTTC 4 cut(s) 58, 244, 2114, 2166
BstACI GRCGYC 1 cut(s) 1651
BstBI TTCGAA 2 cut(s) 704, 1934
BstC8I GCNNGC 4 cut(s) 568, 628, 657, 1318
BstDEI CTNAG 9 cut(s) 168, 541, 660, 747, 777, 1149, 1173, 1218, 2109
BstDSI CCRYGG 1 cut(s) 961
BstF5I GGATG 6 cut(s) 568, 652, 895, 1186, 1718, 1954
BstFNI CGCG 1 cut(s) 803
BstHHI GCGC 1 cut(s) 803
BstKTI GATC 9 cut(s) 177, 531, 676, 960, 1090, 1726, 1888, 2019, 2384
BstMAI GTCTC 3 cut(s) 1283, 1463, 2320
BstMBI GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
BstMWI GCNNNNNNNGC 2 cut(s) 443, 1879
BstNI CCWGG 4 cut(s) 1085, 1256, 1343, 2004
BstNSI RCATGY 3 cut(s) 538, 924, 1423
BstSCI CCNGG 4 cut(s) 1083, 1254, 1341, 2002
BstSLI GKGCMC 1 cut(s) 928
BstUI CGCG 1 cut(s) 803
BstV1I GCAGC 6 cut(s) 193, 1085, 1132, 1276, 1318, 2315
BstV2I GAAGAC 1 cut(s) 1574
BstX2I RGATCY 1 cut(s) 2381
BstYI RGATCY 1 cut(s) 2381
BsuI GTATCC 1 cut(s) 2164
BsuRI GGCC 2 cut(s) 1282, 1347
BtgI CCRYGG 1 cut(s) 961
BtrI CACGTC 1 cut(s) 1736
BtsCI GGATG 6 cut(s) 568, 652, 895, 1186, 1718, 1954
BtsIMutI CAGTG 4 cut(s) 180, 231, 690, 2209
Cac8I GCNNGC 4 cut(s) 568, 628, 657, 1318
CciI TCATGA 2 cut(s) 1957, 2038
CfoI GCGC 1 cut(s) 803
Cfr10I RCCGGY 1 cut(s) 1227
Cfr13I GGNCC 4 cut(s) 1281, 1345, 1762, 1840
CseI GACGC 2 cut(s) 1294, 1640
Csp6I GTAC 3 cut(s) 538, 1120, 1423
CspAI ACCGGT 1 cut(s) 1227
CviQI GTAC 3 cut(s) 538, 1120, 1423
DdeI CTNAG 9 cut(s) 168, 541, 660, 747, 777, 1149, 1173, 1218, 2109
DpnI GATC 9 cut(s) 176, 530, 675, 959, 1089, 1725, 1887, 2018, 2383
DpnII GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
DriI GACNNNNNGTC 1 cut(s) 360
Eam1104I CTCTTC 4 cut(s) 58, 244, 2114, 2166
Eam1105I GACNNNNNGTC 1 cut(s) 360
EarI CTCTTC 4 cut(s) 58, 244, 2114, 2166
Ecl136II GAGCTC 1 cut(s) 1882
Eco130I CCWWGG 1 cut(s) 961
Eco24I GRGCYC 1 cut(s) 1884
Eco31I GGTCTC 1 cut(s) 1283
Eco32I GATATC 3 cut(s) 1095, 1113, 1206
Eco47I GGWCC 2 cut(s) 1762, 1840
Eco53kI GAGCTC 1 cut(s) 1882
EcoICRI GAGCTC 1 cut(s) 1882
EcoO109I RGGNCCY 1 cut(s) 1762
EcoRI GAATTC 2 cut(s) 613, 706
EcoRII CCWGG 4 cut(s) 1083, 1254, 1341, 2002
EcoRV GATATC 3 cut(s) 1095, 1113, 1206
EcoT14I CCWWGG 1 cut(s) 961
EcoT22I ATGCAT 3 cut(s) 474, 1453, 1718
EcoT38I GRGCYC 1 cut(s) 1884
ErhI CCWWGG 1 cut(s) 961
Esp3I CGTCTC 1 cut(s) 2320
FalI AAGNNNNNCTT 2 cut(s) 2345, 2377
FaqI GGGAC 4 cut(s) 209, 330, 1417, 1853
FauNDI CATATG 2 cut(s) 202, 1023
FbaI TGATCA 2 cut(s) 528, 673
Fnu4HI GCNGC 6 cut(s) 207, 1074, 1146, 1265, 1332, 2304
FokI GGATG 6 cut(s) 575, 659, 902, 1193, 1725, 1961
FriOI GRGCYC 1 cut(s) 1884
Fsp4HI GCNGC 6 cut(s) 207, 1074, 1146, 1265, 1332, 2304
FspBI CTAG 3 cut(s) 422, 2048, 2096
GlaI GCGC 1 cut(s) 802
GluI GCNGC 6 cut(s) 207, 1074, 1146, 1265, 1332, 2304
HaeIII GGCC 2 cut(s) 1282, 1347
HapII CCGG 1 cut(s) 1228
HgaI GACGC 2 cut(s) 1294, 1640
HhaI GCGC 1 cut(s) 803
Hin1I GRCGYC 1 cut(s) 1651
Hin6I GCGC 1 cut(s) 801
HinP1I GCGC 1 cut(s) 801
HindIII AAGCTT 3 cut(s) 324, 429, 2322
HinfI GANTC 9 cut(s) 139, 216, 236, 361, 500, 599, 1163, 1354, 1664
HpaII CCGG 1 cut(s) 1228
HphI GGTGA 6 cut(s) 1312, 1865, 1952, 2244, 2356, 2357
Hpy166II GTNNAC 3 cut(s) 926, 943, 2246
Hpy188I TCNGA 8 cut(s) 171, 451, 505, 678, 1092, 1237, 2112, 2198
Hpy188III TCNNGA 4 cut(s) 1958, 2039, 2317, 2333
Hpy8I GTNNAC 3 cut(s) 926, 943, 2246
Hpy99I CGWCG 1 cut(s) 1656
HpyAV CCTTC 5 cut(s) 21, 452, 775, 1171, 2120
HpyCH4III ACNGT 3 cut(s) 1065, 2188, 2204
HpyCH4IV ACGT 1 cut(s) 1735
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 1879
HpyF3I CTNAG 9 cut(s) 168, 541, 660, 747, 777, 1149, 1173, 1218, 2109
HpySE526I ACGT 1 cut(s) 1735
Hsp92I GRCGYC 1 cut(s) 1651
HspAI GCGC 1 cut(s) 801
Ksp22I TGATCA 2 cut(s) 528, 673
Kzo9I GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
LmnI GCTCC 2 cut(s) 798, 1616
Lsp1109I GCAGC 6 cut(s) 193, 1085, 1132, 1276, 1318, 2315
LweI GCATC 8 cut(s) 455, 459, 553, 669, 1251, 1662, 1703, 1968
MaeI CTAG 3 cut(s) 422, 2048, 2096
MaeII ACGT 1 cut(s) 1735
MaeIII GTNAC 8 cut(s) 248, 548, 742, 1579, 1625, 2285, 2294, 2333
MalI GATC 9 cut(s) 176, 530, 675, 959, 1089, 1725, 1887, 2018, 2383
MboI GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
MboII GAAGA 8 cut(s) 45, 231, 995, 1579, 1718, 1878, 2131, 2183
MfeI CAATTG 1 cut(s) 2217
MflI RGATCY 1 cut(s) 2381
MhlI GDGCHC 2 cut(s) 928, 1884
MlyI GAGTC 3 cut(s) 225, 230, 370
MmeI TCCRAC 1 cut(s) 576
Mph1103I ATGCAT 3 cut(s) 474, 1453, 1718
MroXI GAANNNNTTC 3 cut(s) 41, 1064, 2187
MseI TTAA 7 cut(s) 266, 999, 1383, 1389, 1416, 1701, 2373
MslI CAYNNNNRTG 3 cut(s) 317, 1298, 2342
MspA1I CMGCKG 2 cut(s) 938, 1267
MspI CCGG 1 cut(s) 1228
MspR9I CCNGG 4 cut(s) 1085, 1256, 1343, 2004
MunI CAATTG 1 cut(s) 2217
Mva1269I GAATGC 1 cut(s) 1504
MvaI CCWGG 4 cut(s) 1085, 1256, 1343, 2004
MvnI CGCG 1 cut(s) 803
MwoI GCNNNNNNNGC 2 cut(s) 443, 1879
NcoI CCATGG 1 cut(s) 961
NdeI CATATG 2 cut(s) 202, 1023
NdeII GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
NlaIV GGNNCC 3 cut(s) 1810, 1841, 1904
NmeAIII GCCGAG 3 cut(s) 733, 1081, 1292
NmuCI GTSAC 7 cut(s) 248, 548, 742, 1579, 1625, 2294, 2333
NsiI ATGCAT 3 cut(s) 474, 1453, 1718
NspI RCATGY 3 cut(s) 538, 924, 1423
NspV TTCGAA 2 cut(s) 704, 1934
OliI CACNNNNGTG 1 cut(s) 1298
PagI TCATGA 2 cut(s) 1957, 2038
PciI ACATGT 2 cut(s) 534, 1419
PcsI WCGNNNNNNNCGW 2 cut(s) 701, 800
PctI GAATGC 1 cut(s) 1504
PdmI GAANNNNTTC 3 cut(s) 41, 1064, 2187
PfeI GAWTC 6 cut(s) 139, 500, 599, 1163, 1354, 1664
PfoI TCCNGGA 1 cut(s) 1254
PinAI ACCGGT 1 cut(s) 1227
PkrI GCNGC 6 cut(s) 208, 1075, 1147, 1266, 1333, 2305
PleI GAGTC 3 cut(s) 224, 230, 369
PpsI GAGTC 3 cut(s) 224, 230, 369
PpuMI RGGWCCY 1 cut(s) 1762
PscI ACATGT 2 cut(s) 534, 1419
Psp124BI GAGCTC 1 cut(s) 1884
Psp5II RGGWCCY 1 cut(s) 1762
Psp6I CCWGG 4 cut(s) 1083, 1254, 1341, 2002
PspGI CCWGG 4 cut(s) 1083, 1254, 1341, 2002
PspN4I GGNNCC 3 cut(s) 1810, 1841, 1904
PspPI GGNCC 4 cut(s) 1281, 1345, 1762, 1840
PspPPI RGGWCCY 1 cut(s) 1762
PsuI RGATCY 1 cut(s) 2381
PvuII CAGCTG 2 cut(s) 938, 1267
RsaI GTAC 3 cut(s) 539, 1121, 1424
RsaNI GTAC 3 cut(s) 538, 1120, 1423
RseI CAYNNNNRTG 3 cut(s) 317, 1298, 2342
SacI GAGCTC 1 cut(s) 1884
SaqAI TTAA 7 cut(s) 266, 999, 1383, 1389, 1416, 1701, 2373
SatI GCNGC 6 cut(s) 207, 1074, 1146, 1265, 1332, 2304
Sau3AI GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
Sau96I GGNCC 4 cut(s) 1281, 1345, 1762, 1840
SchI GAGTC 3 cut(s) 225, 230, 370
ScrFI CCNGG 4 cut(s) 1085, 1256, 1343, 2004
SduI GDGCHC 2 cut(s) 928, 1884
SfaNI GCATC 8 cut(s) 455, 459, 553, 669, 1251, 1662, 1703, 1968
SfuI TTCGAA 2 cut(s) 704, 1934
SinI GGWCC 2 cut(s) 1762, 1840
SmiMI CAYNNNNRTG 3 cut(s) 317, 1298, 2342
SmlI CTYRAG 4 cut(s) 143, 221, 1123, 1748
SmoI CTYRAG 4 cut(s) 143, 221, 1123, 1748
SsiI CCGC 1 cut(s) 2359
SspMI CTAG 3 cut(s) 422, 2048, 2096
SstI GAGCTC 1 cut(s) 1884
StyD4I CCNGG 4 cut(s) 1083, 1254, 1341, 2002
StyI CCWWGG 1 cut(s) 961
TaaI ACNGT 3 cut(s) 1065, 2188, 2204
TaiI ACGT 1 cut(s) 1738
TatI WGTACW 2 cut(s) 537, 1422
TfiI GAWTC 6 cut(s) 139, 500, 599, 1163, 1354, 1664
Tru1I TTAA 7 cut(s) 266, 999, 1383, 1389, 1416, 1701, 2373
Tru9I TTAA 7 cut(s) 266, 999, 1383, 1389, 1416, 1701, 2373
TscAI CASTG 4 cut(s) 187, 238, 690, 2209
TseFI GTSAC 7 cut(s) 248, 548, 742, 1579, 1625, 2294, 2333
TseI GCWGC 6 cut(s) 206, 1073, 1145, 1264, 1331, 2303
Tsp45I GTSAC 7 cut(s) 248, 548, 742, 1579, 1625, 2294, 2333
TspGWI ACGGA 1 cut(s) 1725
TspRI CASTG 4 cut(s) 187, 238, 690, 2209
VneI GTGCAC 1 cut(s) 924
VpaK11BI GGWCC 2 cut(s) 1762, 1840
XapI RAATTY 5 cut(s) 270, 613, 706, 2042, 2272
XceI RCATGY 3 cut(s) 538, 924, 1423
XmnI GAANNNNTTC 3 cut(s) 41, 1064, 2187
XspI CTAG 3 cut(s) 422, 2048, 2096
Zsp2I ATGCAT 3 cut(s) 474, 1453, 1718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.