Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD04G1191500.v1.1 |
| prunus_persica | Prupe.6G310100_v2.0.a1 |
| pyrus_communis | pycom04g16910 |
| rosa_chinensis | RchiOBHm_Chr3g0457551 |
| rosa_laevigata | RLG00000025211 |
| rosa_multiflora | Rmu_sc0007404.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00421740 |
| rosa_rugosa | Rorug03G0021300 |
| rosa_samantha | Rh3DG085600 |
| rosa_wichuraiana | Rw3G007030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1637 |
| AccII | CGCG | 1 cut(s) | 632 |
| AciI | CCGC | 1 cut(s) | 2188 |
| AclWI | GGATC | 3 cut(s) | 781, 924, 1709 |
| AcsI | RAATTY | 5 cut(s) | 99, 442, 535, 1871, 2101 |
| AcyI | GRCGYC | 1 cut(s) | 1480 |
| AfaI | GTAC | 2 cut(s) | 368, 1253 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 867, 1171, 1647, 1678 |
| AflIII | ACRYGT | 2 cut(s) | 363, 1248 |
| AgeI | ACCGGT | 1 cut(s) | 1056 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 189 |
| AjiI | CACGTC | 1 cut(s) | 1565 |
| AjnI | CCWGG | 5 cut(s) | 912, 1083, 1170, 1322, 1831 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 434, 466 |
| AleI | CACNNNNGTG | 1 cut(s) | 1127 |
| Alw21I | GWGCWC | 2 cut(s) | 757, 1713 |
| Alw26I | GTCTC | 3 cut(s) | 1112, 1292, 2149 |
| Alw44I | GTGCAC | 1 cut(s) | 753 |
| AlwI | GGATC | 3 cut(s) | 781, 924, 1709 |
| AoxI | GGCC | 2 cut(s) | 1109, 1174 |
| ApaLI | GTGCAC | 1 cut(s) | 753 |
| ApeKI | GCWGC | 6 cut(s) | 35, 902, 974, 1093, 1160, 2132 |
| ApoI | RAATTY | 5 cut(s) | 99, 442, 535, 1871, 2101 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 157, 189 |
| AsiGI | ACCGGT | 1 cut(s) | 1056 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 893, 2016 |
| AspLEI | GCGC | 1 cut(s) | 632 |
| AspS9I | GGNCC | 4 cut(s) | 1110, 1174, 1591, 1669 |
| AsuHPI | GGTGA | 6 cut(s) | 1141, 1694, 1781, 2073, 2185, 2186 |
| AsuII | TTCGAA | 2 cut(s) | 533, 1763 |
| AvaII | GGWCC | 2 cut(s) | 1591, 1669 |
| BaeGI | GKGCMC | 1 cut(s) | 757 |
| BanI | GGYRCC | 1 cut(s) | 1637 |
| BanII | GRGCYC | 1 cut(s) | 1713 |
| BbsI | GAAGAC | 1 cut(s) | 1403 |
| Bbv12I | GWGCWC | 2 cut(s) | 757, 1713 |
| BbvI | GCAGC | 6 cut(s) | 22, 914, 961, 1105, 1147, 2144 |
| BccI | CCATC | 4 cut(s) | 1721, 1772, 1850, 2086 |
| BciT130I | CCWGG | 5 cut(s) | 914, 1085, 1172, 1324, 1833 |
| BciVI | GTATCC | 1 cut(s) | 1993 |
| BclI | TGATCA | 1 cut(s) | 502 |
| BcoDI | GTCTC | 3 cut(s) | 1112, 1292, 2149 |
| BfaI | CTAG | 3 cut(s) | 251, 1877, 1925 |
| BfuI | GTATCC | 1 cut(s) | 1993 |
| BisI | GCNGC | 6 cut(s) | 36, 903, 975, 1094, 1161, 2133 |
| BlpI | GCTNAGC | 1 cut(s) | 1047 |
| BlsI | GCNGC | 6 cut(s) | 37, 904, 976, 1095, 1162, 2134 |
| Bme1390I | CCNGG | 5 cut(s) | 914, 1085, 1172, 1324, 1833 |
| Bme18I | GGWCC | 2 cut(s) | 1591, 1669 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 189 |
| BmgBI | CACGTC | 1 cut(s) | 1565 |
| BmgT120I | GGNCC | 4 cut(s) | 1110, 1174, 1591, 1669 |
| BmiI | GGNNCC | 3 cut(s) | 1639, 1670, 1733 |
| BmrFI | CCNGG | 5 cut(s) | 914, 1085, 1172, 1324, 1833 |
| BmrI | ACTGGG | 1 cut(s) | 1655 |
| BmsI | GCATC | 8 cut(s) | 284, 288, 382, 498, 1080, 1491, 1532, 1797 |
| BmuI | ACTGGG | 1 cut(s) | 1655 |
| BpiI | GAAGAC | 1 cut(s) | 1403 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1047 |
| Bpu14I | TTCGAA | 2 cut(s) | 533, 1763 |
| BpuEI | CTTGAG | 3 cut(s) | 35, 973, 1562 |
| BsaHI | GRCGYC | 1 cut(s) | 1480 |
| BsaI | GGTCTC | 1 cut(s) | 1112 |
| BsaJI | CCNNGG | 3 cut(s) | 790, 1171, 1831 |
| BsaWI | WCCGGW | 1 cut(s) | 1056 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 699, 729 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 867, 1171, 1647, 1678 |
| Bse118I | RCCGGY | 1 cut(s) | 1056 |
| Bse1I | ACTGG | 5 cut(s) | 16, 512, 861, 1650, 2046 |
| Bse3DI | GCAATG | 4 cut(s) | 406, 1035, 1356, 2230 |
| BseBI | CCWGG | 5 cut(s) | 914, 1085, 1172, 1324, 1833 |
| BseDI | CCNNGG | 3 cut(s) | 790, 1171, 1831 |
| BseGI | GGATG | 6 cut(s) | 397, 481, 724, 1015, 1547, 1783 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 867, 1171, 1647, 1678 |
| BseMI | GCAATG | 4 cut(s) | 406, 1035, 1356, 2230 |
| BseMII | CTCAG | 6 cut(s) | 384, 567, 597, 993, 1061, 1952 |
| BseNI | ACTGG | 5 cut(s) | 16, 512, 861, 1650, 2046 |
| BseRI | GAGGAG | 2 cut(s) | 683, 1310 |
| BseSI | GKGCMC | 1 cut(s) | 757 |
| BseXI | GCAGC | 6 cut(s) | 22, 914, 961, 1105, 1147, 2144 |
| BsgI | GTGCAG | 1 cut(s) | 365 |
| Bsh1236I | CGCG | 1 cut(s) | 632 |
| BshFI | GGCC | 2 cut(s) | 1111, 1176 |
| BshNI | GGYRCC | 1 cut(s) | 1637 |
| BshTI | ACCGGT | 1 cut(s) | 1056 |
| BsiHKAI | GWGCWC | 2 cut(s) | 757, 1713 |
| BsiSI | CCGG | 1 cut(s) | 1057 |
| BslFI | GGGAC | 4 cut(s) | 38, 159, 1246, 1682 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 867, 1171, 1647, 1678 |
| BsmAI | GTCTC | 3 cut(s) | 1112, 1292, 2149 |
| BsmBI | CGTCTC | 1 cut(s) | 2149 |
| BsmFI | GGGAC | 4 cut(s) | 38, 159, 1246, 1682 |
| BsmI | GAATGC | 1 cut(s) | 1333 |
| BsnI | GGCC | 2 cut(s) | 1111, 1176 |
| Bso31I | GGTCTC | 1 cut(s) | 1112 |
| Bsp119I | TTCGAA | 2 cut(s) | 533, 1763 |
| Bsp1286I | GDGCHC | 2 cut(s) | 757, 1713 |
| Bsp143I | GATC | 7 cut(s) | 3, 502, 786, 916, 1552, 1714, 1845 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1047 |
| Bsp19I | CCATGG | 1 cut(s) | 790 |
| BspACI | CCGC | 1 cut(s) | 2188 |
| BspANI | GGCC | 2 cut(s) | 1111, 1176 |
| BspCNI | CTCAG | 6 cut(s) | 383, 568, 598, 994, 1060, 1951 |
| BspFNI | CGCG | 1 cut(s) | 632 |
| BspHI | TCATGA | 2 cut(s) | 1786, 1867 |
| BspLI | GGNNCC | 3 cut(s) | 1639, 1670, 1733 |
| BspPI | GGATC | 3 cut(s) | 781, 924, 1709 |
| BspT104I | TTCGAA | 2 cut(s) | 533, 1763 |
| BspT107I | GGYRCC | 1 cut(s) | 1637 |
| BspTNI | GGTCTC | 1 cut(s) | 1112 |
| BsrDI | GCAATG | 4 cut(s) | 406, 1035, 1356, 2230 |
| BsrFI | RCCGGY | 1 cut(s) | 1056 |
| BsrI | ACTGG | 5 cut(s) | 16, 512, 861, 1650, 2046 |
| BssAI | RCCGGY | 1 cut(s) | 1056 |
| BssECI | CCNNGG | 3 cut(s) | 790, 1171, 1831 |
| BssMI | GATC | 7 cut(s) | 3, 502, 786, 916, 1552, 1714, 1845 |
| BssNI | GRCGYC | 1 cut(s) | 1480 |
| BssT1I | CCWWGG | 1 cut(s) | 790 |
| Bst2UI | CCWGG | 5 cut(s) | 914, 1085, 1172, 1324, 1833 |
| Bst4CI | ACNGT | 4 cut(s) | 173, 894, 2017, 2033 |
| Bst6I | CTCTTC | 3 cut(s) | 73, 1943, 1995 |
| BstACI | GRCGYC | 1 cut(s) | 1480 |
| BstBI | TTCGAA | 2 cut(s) | 533, 1763 |
| BstC8I | GCNNGC | 4 cut(s) | 397, 457, 486, 1147 |
| BstDEI | CTNAG | 8 cut(s) | 370, 489, 576, 606, 978, 1002, 1047, 1938 |
| BstDSI | CCRYGG | 1 cut(s) | 790 |
| BstF5I | GGATG | 6 cut(s) | 397, 481, 724, 1015, 1547, 1783 |
| BstFNI | CGCG | 1 cut(s) | 632 |
| BstHHI | GCGC | 1 cut(s) | 632 |
| BstKTI | GATC | 7 cut(s) | 6, 505, 789, 919, 1555, 1717, 1848 |
| BstMAI | GTCTC | 3 cut(s) | 1112, 1292, 2149 |
| BstMBI | GATC | 7 cut(s) | 3, 502, 786, 916, 1552, 1714, 1845 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 272, 1708 |
| BstNI | CCWGG | 5 cut(s) | 914, 1085, 1172, 1324, 1833 |
| BstNSI | RCATGY | 3 cut(s) | 367, 753, 1252 |
| BstSCI | CCNGG | 5 cut(s) | 912, 1083, 1170, 1322, 1831 |
| BstSLI | GKGCMC | 1 cut(s) | 757 |
| BstUI | CGCG | 1 cut(s) | 632 |
| BstV1I | GCAGC | 6 cut(s) | 22, 914, 961, 1105, 1147, 2144 |
| BstV2I | GAAGAC | 1 cut(s) | 1403 |
| BsuI | GTATCC | 1 cut(s) | 1993 |
| BsuRI | GGCC | 2 cut(s) | 1111, 1176 |
| BtgI | CCRYGG | 1 cut(s) | 790 |
| BtrI | CACGTC | 1 cut(s) | 1565 |
| BtsCI | GGATG | 6 cut(s) | 397, 481, 724, 1015, 1547, 1783 |
| BtsIMutI | CAGTG | 4 cut(s) | 9, 60, 519, 2038 |
| Cac8I | GCNNGC | 4 cut(s) | 397, 457, 486, 1147 |
| CciI | TCATGA | 2 cut(s) | 1786, 1867 |
| CfoI | GCGC | 1 cut(s) | 632 |
| Cfr10I | RCCGGY | 1 cut(s) | 1056 |
| Cfr13I | GGNCC | 4 cut(s) | 1110, 1174, 1591, 1669 |
| CseI | GACGC | 2 cut(s) | 1123, 1469 |
| Csp6I | GTAC | 2 cut(s) | 367, 1252 |
| CspAI | ACCGGT | 1 cut(s) | 1056 |
| CviQI | GTAC | 2 cut(s) | 367, 1252 |
| DdeI | CTNAG | 8 cut(s) | 370, 489, 576, 606, 978, 1002, 1047, 1938 |
| DpnI | GATC | 7 cut(s) | 5, 504, 788, 918, 1554, 1716, 1847 |
| DpnII | GATC | 7 cut(s) | 3, 502, 786, 916, 1552, 1714, 1845 |
| DriI | GACNNNNNGTC | 1 cut(s) | 189 |
| Eam1104I | CTCTTC | 3 cut(s) | 73, 1943, 1995 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 189 |
| EarI | CTCTTC | 3 cut(s) | 73, 1943, 1995 |
| Ecl136II | GAGCTC | 1 cut(s) | 1711 |
| Eco130I | CCWWGG | 1 cut(s) | 790 |
| Eco24I | GRGCYC | 1 cut(s) | 1713 |
| Eco31I | GGTCTC | 1 cut(s) | 1112 |
| Eco32I | GATATC | 3 cut(s) | 924, 942, 1035 |
| Eco47I | GGWCC | 2 cut(s) | 1591, 1669 |
| Eco53kI | GAGCTC | 1 cut(s) | 1711 |
| EcoICRI | GAGCTC | 1 cut(s) | 1711 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1591 |
| EcoRI | GAATTC | 2 cut(s) | 442, 535 |
| EcoRII | CCWGG | 5 cut(s) | 912, 1083, 1170, 1322, 1831 |
| EcoRV | GATATC | 3 cut(s) | 924, 942, 1035 |
| EcoT14I | CCWWGG | 1 cut(s) | 790 |
| EcoT22I | ATGCAT | 3 cut(s) | 303, 1282, 1547 |
| EcoT38I | GRGCYC | 1 cut(s) | 1713 |
| ErhI | CCWWGG | 1 cut(s) | 790 |
| Esp3I | CGTCTC | 1 cut(s) | 2149 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2174, 2206 |
| FaqI | GGGAC | 4 cut(s) | 38, 159, 1246, 1682 |
| FauNDI | CATATG | 2 cut(s) | 31, 852 |
| FbaI | TGATCA | 1 cut(s) | 502 |
| Fnu4HI | GCNGC | 6 cut(s) | 36, 903, 975, 1094, 1161, 2133 |
| FokI | GGATG | 6 cut(s) | 404, 488, 731, 1022, 1554, 1790 |
| FriOI | GRGCYC | 1 cut(s) | 1713 |
| Fsp4HI | GCNGC | 6 cut(s) | 36, 903, 975, 1094, 1161, 2133 |
| FspBI | CTAG | 3 cut(s) | 251, 1877, 1925 |
| GlaI | GCGC | 1 cut(s) | 631 |
| GluI | GCNGC | 6 cut(s) | 36, 903, 975, 1094, 1161, 2133 |
| HaeIII | GGCC | 2 cut(s) | 1111, 1176 |
| HapII | CCGG | 1 cut(s) | 1057 |
| HgaI | GACGC | 2 cut(s) | 1123, 1469 |
| HhaI | GCGC | 1 cut(s) | 632 |
| Hin1I | GRCGYC | 1 cut(s) | 1480 |
| Hin6I | GCGC | 1 cut(s) | 630 |
| HinP1I | GCGC | 1 cut(s) | 630 |
| HindIII | AAGCTT | 3 cut(s) | 153, 258, 2151 |
| HinfI | GANTC | 7 cut(s) | 45, 65, 329, 428, 992, 1183, 1493 |
| HpaII | CCGG | 1 cut(s) | 1057 |
| HphI | GGTGA | 6 cut(s) | 1141, 1694, 1781, 2073, 2185, 2186 |
| Hpy166II | GTNNAC | 3 cut(s) | 755, 772, 2075 |
| Hpy188I | TCNGA | 7 cut(s) | 280, 334, 507, 921, 1066, 1941, 2027 |
| Hpy188III | TCNNGA | 4 cut(s) | 1787, 1868, 2146, 2162 |
| Hpy8I | GTNNAC | 3 cut(s) | 755, 772, 2075 |
| Hpy99I | CGWCG | 1 cut(s) | 1485 |
| HpyAV | CCTTC | 4 cut(s) | 281, 604, 1000, 1949 |
| HpyCH4III | ACNGT | 4 cut(s) | 173, 894, 2017, 2033 |
| HpyCH4IV | ACGT | 1 cut(s) | 1564 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 272, 1708 |
| HpyF3I | CTNAG | 8 cut(s) | 370, 489, 576, 606, 978, 1002, 1047, 1938 |
| HpySE526I | ACGT | 1 cut(s) | 1564 |
| Hsp92I | GRCGYC | 1 cut(s) | 1480 |
| HspAI | GCGC | 1 cut(s) | 630 |
| Ksp22I | TGATCA | 1 cut(s) | 502 |
| Kzo9I | GATC | 7 cut(s) | 3, 502, 786, 916, 1552, 1714, 1845 |
| LmnI | GCTCC | 3 cut(s) | 627, 1445, 2210 |
| Lsp1109I | GCAGC | 6 cut(s) | 22, 914, 961, 1105, 1147, 2144 |
| LweI | GCATC | 8 cut(s) | 284, 288, 382, 498, 1080, 1491, 1532, 1797 |
| MaeI | CTAG | 3 cut(s) | 251, 1877, 1925 |
| MaeII | ACGT | 1 cut(s) | 1564 |
| MaeIII | GTNAC | 8 cut(s) | 77, 377, 571, 947, 1408, 1454, 2123, 2162 |
| MalI | GATC | 7 cut(s) | 5, 504, 788, 918, 1554, 1716, 1847 |
| MboI | GATC | 7 cut(s) | 3, 502, 786, 916, 1552, 1714, 1845 |
| MboII | GAAGA | 7 cut(s) | 60, 824, 1408, 1547, 1707, 1960, 2012 |
| MfeI | CAATTG | 1 cut(s) | 2046 |
| MhlI | GDGCHC | 2 cut(s) | 757, 1713 |
| MlyI | GAGTC | 2 cut(s) | 54, 59 |
| MmeI | TCCRAC | 1 cut(s) | 405 |
| Mph1103I | ATGCAT | 3 cut(s) | 303, 1282, 1547 |
| MroXI | GAANNNNTTC | 2 cut(s) | 893, 2016 |
| MseI | TTAA | 7 cut(s) | 360, 828, 1212, 1218, 1245, 1530, 2202 |
| MslI | CAYNNNNRTG | 3 cut(s) | 146, 1127, 2171 |
| MspA1I | CMGCKG | 2 cut(s) | 767, 1096 |
| MspI | CCGG | 1 cut(s) | 1057 |
| MspR9I | CCNGG | 5 cut(s) | 914, 1085, 1172, 1324, 1833 |
| MunI | CAATTG | 1 cut(s) | 2046 |
| Mva1269I | GAATGC | 1 cut(s) | 1333 |
| MvaI | CCWGG | 5 cut(s) | 914, 1085, 1172, 1324, 1833 |
| MvnI | CGCG | 1 cut(s) | 632 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 272, 1708 |
| NcoI | CCATGG | 1 cut(s) | 790 |
| NdeI | CATATG | 2 cut(s) | 31, 852 |
| NdeII | GATC | 7 cut(s) | 3, 502, 786, 916, 1552, 1714, 1845 |
| NlaIV | GGNNCC | 3 cut(s) | 1639, 1670, 1733 |
| NmeAIII | GCCGAG | 3 cut(s) | 562, 910, 1121 |
| NmuCI | GTSAC | 7 cut(s) | 77, 377, 571, 1408, 1454, 2123, 2162 |
| NsiI | ATGCAT | 3 cut(s) | 303, 1282, 1547 |
| NspI | RCATGY | 3 cut(s) | 367, 753, 1252 |
| NspV | TTCGAA | 2 cut(s) | 533, 1763 |
| OliI | CACNNNNGTG | 1 cut(s) | 1127 |
| PagI | TCATGA | 2 cut(s) | 1786, 1867 |
| PciI | ACATGT | 2 cut(s) | 363, 1248 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 530, 629 |
| PctI | GAATGC | 1 cut(s) | 1333 |
| PdmI | GAANNNNTTC | 2 cut(s) | 893, 2016 |
| PfeI | GAWTC | 5 cut(s) | 329, 428, 992, 1183, 1493 |
| PfoI | TCCNGGA | 1 cut(s) | 1083 |
| PinAI | ACCGGT | 1 cut(s) | 1056 |
| PkrI | GCNGC | 6 cut(s) | 37, 904, 976, 1095, 1162, 2134 |
| PleI | GAGTC | 2 cut(s) | 53, 59 |
| PpsI | GAGTC | 2 cut(s) | 53, 59 |
| PpuMI | RGGWCCY | 1 cut(s) | 1591 |
| PscI | ACATGT | 2 cut(s) | 363, 1248 |
| Psp124BI | GAGCTC | 1 cut(s) | 1713 |
| Psp5II | RGGWCCY | 1 cut(s) | 1591 |
| Psp6I | CCWGG | 5 cut(s) | 912, 1083, 1170, 1322, 1831 |
| PspGI | CCWGG | 5 cut(s) | 912, 1083, 1170, 1322, 1831 |
| PspN4I | GGNNCC | 3 cut(s) | 1639, 1670, 1733 |
| PspPI | GGNCC | 4 cut(s) | 1110, 1174, 1591, 1669 |
| PspPPI | RGGWCCY | 1 cut(s) | 1591 |
| PvuII | CAGCTG | 2 cut(s) | 767, 1096 |
| RsaI | GTAC | 2 cut(s) | 368, 1253 |
| RsaNI | GTAC | 2 cut(s) | 367, 1252 |
| RseI | CAYNNNNRTG | 3 cut(s) | 146, 1127, 2171 |
| SacI | GAGCTC | 1 cut(s) | 1713 |
| SaqAI | TTAA | 7 cut(s) | 360, 828, 1212, 1218, 1245, 1530, 2202 |
| SatI | GCNGC | 6 cut(s) | 36, 903, 975, 1094, 1161, 2133 |
| Sau3AI | GATC | 7 cut(s) | 3, 502, 786, 916, 1552, 1714, 1845 |
| Sau96I | GGNCC | 4 cut(s) | 1110, 1174, 1591, 1669 |
| SchI | GAGTC | 2 cut(s) | 54, 59 |
| ScrFI | CCNGG | 5 cut(s) | 914, 1085, 1172, 1324, 1833 |
| SduI | GDGCHC | 2 cut(s) | 757, 1713 |
| SfaNI | GCATC | 8 cut(s) | 284, 288, 382, 498, 1080, 1491, 1532, 1797 |
| SfuI | TTCGAA | 2 cut(s) | 533, 1763 |
| SinI | GGWCC | 2 cut(s) | 1591, 1669 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 146, 1127, 2171 |
| SmlI | CTYRAG | 3 cut(s) | 50, 952, 1577 |
| SmoI | CTYRAG | 3 cut(s) | 50, 952, 1577 |
| SsiI | CCGC | 1 cut(s) | 2188 |
| SspMI | CTAG | 3 cut(s) | 251, 1877, 1925 |
| SstI | GAGCTC | 1 cut(s) | 1713 |
| StyD4I | CCNGG | 5 cut(s) | 912, 1083, 1170, 1322, 1831 |
| StyI | CCWWGG | 1 cut(s) | 790 |
| TaaI | ACNGT | 4 cut(s) | 173, 894, 2017, 2033 |
| TaiI | ACGT | 1 cut(s) | 1567 |
| TatI | WGTACW | 2 cut(s) | 366, 1251 |
| TfiI | GAWTC | 5 cut(s) | 329, 428, 992, 1183, 1493 |
| Tru1I | TTAA | 7 cut(s) | 360, 828, 1212, 1218, 1245, 1530, 2202 |
| Tru9I | TTAA | 7 cut(s) | 360, 828, 1212, 1218, 1245, 1530, 2202 |
| TscAI | CASTG | 4 cut(s) | 16, 67, 519, 2038 |
| TseFI | GTSAC | 7 cut(s) | 77, 377, 571, 1408, 1454, 2123, 2162 |
| TseI | GCWGC | 6 cut(s) | 35, 902, 974, 1093, 1160, 2132 |
| Tsp45I | GTSAC | 7 cut(s) | 77, 377, 571, 1408, 1454, 2123, 2162 |
| TspGWI | ACGGA | 1 cut(s) | 1554 |
| TspRI | CASTG | 4 cut(s) | 16, 67, 519, 2038 |
| VneI | GTGCAC | 1 cut(s) | 753 |
| VpaK11BI | GGWCC | 2 cut(s) | 1591, 1669 |
| XapI | RAATTY | 5 cut(s) | 99, 442, 535, 1871, 2101 |
| XceI | RCATGY | 3 cut(s) | 367, 753, 1252 |
| XmnI | GAANNNNTTC | 2 cut(s) | 893, 2016 |
| XspI | CTAG | 3 cut(s) | 251, 1877, 1925 |
| Zsp2I | ATGCAT | 3 cut(s) | 303, 1282, 1547 |