Rroxscaffold_6G00421740

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018505
Physical Location & Seq
Reverse (-)
42830356 .. 42832593
2238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421740.1

Sequence Viewer

Length: 2238 bp
ATGATCCTCACTGCTTTCATTAGGGACACATATGCTGCAAGTAGAGTTCTCAAGTTCTCCACTGACTCTTCTTTTAGTGACATTGATTTGTCATTAAGGATTTTCAATCAAATTGAGAACTCAAATGGGTTCATTTGGAACACTATGATGAAAGCTTATATACAAAGAAACTGTCCCCAAAAGACTTTGAGTCTTTACAAATTGATGTTGGGTAAGAATGGGGATAGAGATCATTATACATACCCAATCCTAGTTCAAGCTTGTGCTATGAGAGCATCAGAGTTTGAAGGGAAACAGATGCATGGCCATATTTTGAAGTTTGGGTTTGGTTCAGATGTGTATGTGCAGAACACATTGATCAATATGTACTCTGTTTGTGACAATATGAGGGATGCACGCAAGGTGTTTGATGAAATGCCTGTGTTGGATTCGGTGGCGTGGAATTCGATATTGGCTGGCTATGTCAGGGTGGGGGATGTGAAGCAGGCTAAGTGTATATATGATCAGATGCCAGTGAGGAACACGATTGCTTCGAATTCTATGATTGTGTTGTTTGGTAAAAGAGGTTGTGTGACTGAGGCTCGGCGGTTGTTTGATGAGCTGCCTGAGAAGGATATGGTTTCGTGGAGCGCGTTGATTTCTTGTTTCGAGCAAAATGAGATGTATGAGTATGCATTGGATATGTTTGTGAAAATGGTTGCTAATGGAGTTATGGTGGATGAGGTTGTGGTGGTTAGTGTGCTTTCGGCATGTGCACATTTGTCAGCTGTCCACACAGGGAAGTTGATCCATGGCTTAGTTGTGAAAATTGGAATTGAAAGTTATGTTAATCTTCAAAATGCTTTTATTCATATGTATTCGAGTTGTGGGGAGATAATGGTTGCCGAGAAACTGTTCAATGCAGCCTACAACCTGGATCAGATATCTTGGAACTCAATGATATCGGGGTACTTGAGATGTGGTCTAGTTGAAGCTGCTAAGACATTATTTGATTCCATGCCTGAGAAGGATGTAGTGTCTTGGAGTGCAATGATATCAGGCTATGCTCAGCATGACCGGTTTTCAGAAACTTTGGCATTATTCCAGGAGATGCAGCTGTGTGGAATTAGGCCCGATGAGACCACTTTGGTGAGCGTCATCTCGGCTTGCACTCATTTGGCTGCCCTTGACCTGGGCCAATGGATTCATGCATATATAAGGAAAAATAGCCTTAAAGTTAATGTCTTTCTTGGGACAACCCTTATTAACATGTACTTGAAATGTGGGTGTGTGGAGAATGCATTGGAGGTTTTCCAAGAGACAGCAGTAAAGGGAGTTTCTACTTGGAATGCTCTTATTCTTGGGTTGGCAATGAATGGGTTGGTGGAGAAGTCACTTGAAATGTTTTCGGAGATGAAGAAATGTGGCGTGGCACCTAATGAGGTAACCTTCATGGGAGTTATTGGAGCTTGTCGTCACATGGGCTTAGTAGATGATGGGCGTCACCACTTTGATTCCATGATGCAGGAACACAAGATAGAACCCAATGTTAAGCATTACGGATGCATGGTTGATCTTCTCGGACGTGCTGGTATGCTCAAGGAGGCAGAGGACCTCATTGAAAGTATGCCAATGACACCAGATGTTGCTACTTGGGGTGCCTTATTGGGGGCTTGTAAAAAACATGGGGACCATGACAGGGGTGAGAGGATAGGAAGAAAGCTCATTGAGCTCGATCCTAACCATGATGGTTTCCACGTGTTGTTGTCCAATATATGTGCTTCAAAAGGTGATTGGCATGGTGTTTATGAGATTAGGGGAATAATGATGCAACATGGGGTGGTAAAGACCCCAGGTTGTAGCATGATCGAAGCAGATGGTGTAGTTCATGAATTTCTAGCAGGAGACAAGAAACACCCTCGAATGAAAGAGATTGAGGTTATGCTAGATGAAATGGCTCAGAAATTGAAGAGGGAAGGTTATGCACCAGATACAAATGAGGTATCCTTTGACATTGATGAAGAGGAGAAAGAAACTGCTCTTTTCAGACACAGTGAGAAACTGGCAATTGCCTTTGGGCTAATCGCTATCAGTCCACCATCACCAATACGAATAATAAAGAATTTGCGAATATGTAATGATTGTCACATGGCAGCAAAGTTCGTCTCGAAAGCTTTTGGTCGTGACATTGTGGTGAGGGATAAGCACCGCTTTCACCACTTTAAGCAGGGATCTTGTTCCTGCAATGACTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

745

Amino Acids

83.73

Weight (kDa)

6.12

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 44 - 89 3.3e-07 PPR repeat family
PPR PF01535 308 - 337 1.1e-07 PPR repeat
PPR_2 PF13041 336 - 384 6.9e-10 PPR repeat family
PPR PF01535 339 - 369 8.3e-07 PPR repeat
PPR_2 PF13041 438 - 484 2.8e-11 PPR repeat family
PPR PF01535 440 - 470 9.2e-08 PPR repeat
E_motif PF20431 555 - 617 3.5e-13 E motif
Eplus_motif PF20430 622 - 649 4.8e-06 E+ motif
DYW_deaminase PF14432 653 - 745 7.6e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018505)

Species Orthologous Gene IDs
malus_domestica MD04G1191500.v1.1
prunus_persica Prupe.6G310100_v2.0.a1
pyrus_communis pycom04g16910
rosa_chinensis RchiOBHm_Chr3g0457551
rosa_laevigata RLG00000025211
rosa_multiflora Rmu_sc0007404.1_g000005
rosa_roxburghii Rroxscaffold_6G00421740
rosa_rugosa Rorug03G0021300
rosa_samantha Rh3DG085600
rosa_wichuraiana Rw3G007030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1411, 1637
AccII CGCG 1 cut(s) 632
AciI CCGC 2 cut(s) 586, 2188
AclWI GGATC 4 cut(s) 781, 924, 1709, 2218
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 4 cut(s) 442, 535, 1871, 2101
AcvI CACGTG 1 cut(s) 1738
AcyI GRCGYC 1 cut(s) 1480
AfaI GTAC 3 cut(s) 368, 950, 1253
AfiI CCNNNNNNNGG 3 cut(s) 1171, 1647, 1678
AflIII ACRYGT 2 cut(s) 1248, 1737
AgeI ACCGGT 1 cut(s) 1056
AhdI GACNNNNNGTC 1 cut(s) 189
AjiI CACGTC 1 cut(s) 1565
AjnI CCWGG 4 cut(s) 912, 1083, 1170, 1831
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AleI CACNNNNGTG 1 cut(s) 1127
Alw21I GWGCWC 2 cut(s) 757, 1713
Alw26I GTCTC 4 cut(s) 1112, 1292, 1878, 2149
Alw44I GTGCAC 1 cut(s) 753
AlwI GGATC 4 cut(s) 781, 924, 1709, 2218
AoxI GGCC 3 cut(s) 304, 1109, 1174
ApaLI GTGCAC 1 cut(s) 753
ApeKI GCWGC 7 cut(s) 35, 601, 902, 974, 1093, 1160, 2132
ApoI RAATTY 4 cut(s) 442, 535, 1871, 2101
ArsI GACNNNNNNTTYG 2 cut(s) 157, 189
AsiGI ACCGGT 1 cut(s) 1056
Asp700I GAANNNNTTC 1 cut(s) 893
AspLEI GCGC 1 cut(s) 632
AspS9I GGNCC 4 cut(s) 1110, 1174, 1591, 1669
AsuHPI GGTGA 7 cut(s) 1141, 1475, 1694, 1781, 2073, 2185, 2186
AsuII TTCGAA 1 cut(s) 533
AvaII GGWCC 2 cut(s) 1591, 1669
BaeGI GKGCMC 1 cut(s) 757
BalI TGGCCA 1 cut(s) 306
BanI GGYRCC 2 cut(s) 1411, 1637
BanII GRGCYC 1 cut(s) 1713
BbrPI CACGTG 1 cut(s) 1738
Bbv12I GWGCWC 2 cut(s) 757, 1713
BbvI GCAGC 7 cut(s) 22, 588, 914, 961, 1105, 1147, 2144
BccI CCATC 4 cut(s) 1469, 1721, 1850, 2086
BciT130I CCWGG 4 cut(s) 914, 1085, 1172, 1833
BciVI GTATCC 1 cut(s) 1993
BclI TGATCA 2 cut(s) 357, 502
BcoDI GTCTC 4 cut(s) 1112, 1292, 1878, 2149
BfaI CTAG 4 cut(s) 251, 965, 1877, 1925
BfuI GTATCC 1 cut(s) 1993
BisI GCNGC 7 cut(s) 36, 602, 903, 975, 1094, 1161, 2133
BlpI GCTNAGC 1 cut(s) 1047
BlsI GCNGC 7 cut(s) 37, 603, 904, 976, 1095, 1162, 2134
Bme1390I CCNGG 4 cut(s) 914, 1085, 1172, 1833
Bme18I GGWCC 2 cut(s) 1591, 1669
BmeRI GACNNNNNGTC 1 cut(s) 189
BmgBI CACGTC 1 cut(s) 1565
BmgT120I GGNCC 4 cut(s) 1110, 1174, 1591, 1669
BmiI GGNNCC 3 cut(s) 1413, 1639, 1670
BmrFI CCNGG 4 cut(s) 914, 1085, 1172, 1833
BmsI GCATC 8 cut(s) 284, 288, 382, 498, 1080, 1491, 1532, 1797
Bpu1102I GCTNAGC 1 cut(s) 1047
Bpu14I TTCGAA 1 cut(s) 533
BpuEI CTTGAG 3 cut(s) 35, 973, 1562
BsaAI YACGTR 1 cut(s) 1738
BsaBI GATNNNNATC 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 1480
BsaI GGTCTC 1 cut(s) 1112
BsaJI CCNNGG 3 cut(s) 790, 1171, 1831
BsaWI WCCGGW 1 cut(s) 1056
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 3 cut(s) 1171, 1647, 1678
Bse118I RCCGGY 1 cut(s) 1056
Bse1I ACTGG 2 cut(s) 512, 2046
Bse3DI GCAATG 3 cut(s) 1035, 1356, 2230
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 4 cut(s) 914, 1085, 1172, 1833
BseDI CCNNGG 3 cut(s) 790, 1171, 1831
BseGI GGATG 5 cut(s) 397, 481, 724, 1015, 1547
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 3 cut(s) 1171, 1647, 1678
BseMI GCAATG 3 cut(s) 1035, 1356, 2230
BseMII CTCAG 5 cut(s) 567, 597, 993, 1061, 1952
BseNI ACTGG 2 cut(s) 512, 2046
BseRI GAGGAG 1 cut(s) 2018
BseSI GKGCMC 1 cut(s) 757
BseXI GCAGC 7 cut(s) 22, 588, 914, 961, 1105, 1147, 2144
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 632
BshFI GGCC 3 cut(s) 306, 1111, 1176
BshNI GGYRCC 2 cut(s) 1411, 1637
BshTI ACCGGT 1 cut(s) 1056
BsiHKAI GWGCWC 2 cut(s) 757, 1713
BsiSI CCGG 1 cut(s) 1057
BslFI GGGAC 4 cut(s) 38, 159, 1246, 1682
BslI CCNNNNNNNGG 3 cut(s) 1171, 1647, 1678
BsmAI GTCTC 4 cut(s) 1112, 1292, 1878, 2149
BsmBI CGTCTC 1 cut(s) 2149
BsmFI GGGAC 4 cut(s) 38, 159, 1246, 1682
BsmI GAATGC 2 cut(s) 1282, 1333
BsnI GGCC 3 cut(s) 306, 1111, 1176
Bso31I GGTCTC 1 cut(s) 1112
Bsp119I TTCGAA 1 cut(s) 533
Bsp1286I GDGCHC 2 cut(s) 757, 1713
Bsp1720I GCTNAGC 1 cut(s) 1047
Bsp19I CCATGG 1 cut(s) 790
BspACI CCGC 2 cut(s) 586, 2188
BspANI GGCC 3 cut(s) 306, 1111, 1176
BspCNI CTCAG 5 cut(s) 568, 598, 994, 1060, 1951
BspFNI CGCG 1 cut(s) 632
BspHI TCATGA 1 cut(s) 1867
BspLI GGNNCC 3 cut(s) 1413, 1639, 1670
BspPI GGATC 4 cut(s) 781, 924, 1709, 2218
BspT104I TTCGAA 1 cut(s) 533
BspT107I GGYRCC 2 cut(s) 1411, 1637
BspTNI GGTCTC 1 cut(s) 1112
BsrDI GCAATG 3 cut(s) 1035, 1356, 2230
BsrFI RCCGGY 1 cut(s) 1056
BsrI ACTGG 2 cut(s) 512, 2046
BssAI RCCGGY 1 cut(s) 1056
BssECI CCNNGG 3 cut(s) 790, 1171, 1831
BssNI GRCGYC 1 cut(s) 1480
BssT1I CCWWGG 1 cut(s) 790
Bst2UI CCWGG 4 cut(s) 914, 1085, 1172, 1833
Bst4CI ACNGT 3 cut(s) 173, 894, 2033
Bst6I CTCTTC 3 cut(s) 73, 1943, 1995
BstACI GRCGYC 1 cut(s) 1480
BstBAI YACGTR 1 cut(s) 1738
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 4 cut(s) 397, 457, 486, 1147
BstDEI CTNAG 9 cut(s) 489, 576, 606, 796, 978, 1002, 1047, 1465, 1938
BstDSI CCRYGG 1 cut(s) 790
BstEII GGTNACC 1 cut(s) 1423
BstF5I GGATG 5 cut(s) 397, 481, 724, 1015, 1547
BstFNI CGCG 1 cut(s) 632
BstHHI GCGC 1 cut(s) 632
BstMAI GTCTC 4 cut(s) 1112, 1292, 1878, 2149
BstMWI GCNNNNNNNGC 2 cut(s) 272, 1708
BstNI CCWGG 4 cut(s) 914, 1085, 1172, 1833
BstNSI RCATGY 2 cut(s) 753, 1252
BstPI GGTNACC 1 cut(s) 1423
BstSCI CCNGG 4 cut(s) 912, 1083, 1170, 1831
BstSLI GKGCMC 1 cut(s) 757
BstUI CGCG 1 cut(s) 632
BstV1I GCAGC 7 cut(s) 22, 588, 914, 961, 1105, 1147, 2144
BstX2I RGATCY 1 cut(s) 2210
BstYI RGATCY 1 cut(s) 2210
BsuI GTATCC 1 cut(s) 1993
BsuRI GGCC 3 cut(s) 306, 1111, 1176
BtgI CCRYGG 1 cut(s) 790
BtrI CACGTC 1 cut(s) 1565
BtsCI GGATG 5 cut(s) 397, 481, 724, 1015, 1547
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 4 cut(s) 9, 60, 519, 2038
Cac8I GCNNGC 4 cut(s) 397, 457, 486, 1147
CciI TCATGA 1 cut(s) 1867
CfoI GCGC 1 cut(s) 632
Cfr10I RCCGGY 1 cut(s) 1056
Cfr13I GGNCC 4 cut(s) 1110, 1174, 1591, 1669
CseI GACGC 2 cut(s) 1123, 1469
Csp6I GTAC 3 cut(s) 367, 949, 1252
CspAI ACCGGT 1 cut(s) 1056
CviQI GTAC 3 cut(s) 367, 949, 1252
DdeI CTNAG 9 cut(s) 489, 576, 606, 796, 978, 1002, 1047, 1465, 1938
DriI GACNNNNNGTC 1 cut(s) 189
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 3 cut(s) 73, 1943, 1995
Eam1105I GACNNNNNGTC 1 cut(s) 189
EarI CTCTTC 3 cut(s) 73, 1943, 1995
Ecl136II GAGCTC 1 cut(s) 1711
Eco130I CCWWGG 1 cut(s) 790
Eco24I GRGCYC 1 cut(s) 1713
Eco31I GGTCTC 1 cut(s) 1112
Eco32I GATATC 3 cut(s) 924, 942, 1035
Eco47I GGWCC 2 cut(s) 1591, 1669
Eco53kI GAGCTC 1 cut(s) 1711
Eco72I CACGTG 1 cut(s) 1738
Eco91I GGTNACC 1 cut(s) 1423
EcoICRI GAGCTC 1 cut(s) 1711
EcoO109I RGGNCCY 1 cut(s) 1591
EcoO65I GGTNACC 1 cut(s) 1423
EcoRI GAATTC 2 cut(s) 442, 535
EcoRII CCWGG 4 cut(s) 912, 1083, 1170, 1831
EcoRV GATATC 3 cut(s) 924, 942, 1035
EcoT14I CCWWGG 1 cut(s) 790
EcoT22I ATGCAT 5 cut(s) 303, 676, 1192, 1282, 1547
EcoT38I GRGCYC 1 cut(s) 1713
ErhI CCWWGG 1 cut(s) 790
Esp3I CGTCTC 1 cut(s) 2149
FalI AAGNNNNNCTT 2 cut(s) 2174, 2206
FaqI GGGAC 4 cut(s) 38, 159, 1246, 1682
FauNDI CATATG 2 cut(s) 31, 852
FbaI TGATCA 2 cut(s) 357, 502
Fnu4HI GCNGC 7 cut(s) 36, 602, 903, 975, 1094, 1161, 2133
FokI GGATG 5 cut(s) 404, 488, 731, 1022, 1554
FriOI GRGCYC 1 cut(s) 1713
Fsp4HI GCNGC 7 cut(s) 36, 602, 903, 975, 1094, 1161, 2133
FspBI CTAG 4 cut(s) 251, 965, 1877, 1925
GlaI GCGC 1 cut(s) 631
GluI GCNGC 7 cut(s) 36, 602, 903, 975, 1094, 1161, 2133
HaeIII GGCC 3 cut(s) 306, 1111, 1176
HapII CCGG 1 cut(s) 1057
HgaI GACGC 2 cut(s) 1123, 1469
HhaI GCGC 1 cut(s) 632
Hin1I GRCGYC 1 cut(s) 1480
Hin6I GCGC 1 cut(s) 630
HinP1I GCGC 1 cut(s) 630
HindIII AAGCTT 3 cut(s) 153, 258, 2151
HinfI GANTC 6 cut(s) 65, 190, 428, 992, 1183, 1493
HpaII CCGG 1 cut(s) 1057
HphI GGTGA 7 cut(s) 1141, 1475, 1694, 1781, 2073, 2185, 2186
Hpy166II GTNNAC 3 cut(s) 755, 772, 2075
Hpy188I TCNGA 9 cut(s) 280, 334, 507, 921, 1066, 1390, 1562, 1941, 2027
Hpy188III TCNNGA 3 cut(s) 1868, 2146, 2162
Hpy8I GTNNAC 3 cut(s) 755, 772, 2075
HpyAV CCTTC 5 cut(s) 281, 604, 1000, 1438, 1949
HpyCH4III ACNGT 3 cut(s) 173, 894, 2033
HpyCH4IV ACGT 2 cut(s) 1564, 1737
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 1708
HpyF3I CTNAG 9 cut(s) 489, 576, 606, 796, 978, 1002, 1047, 1465, 1938
HpySE526I ACGT 2 cut(s) 1564, 1737
Hsp92I GRCGYC 1 cut(s) 1480
HspAI GCGC 1 cut(s) 630
Ksp22I TGATCA 2 cut(s) 357, 502
LmnI GCTCC 2 cut(s) 627, 1445
Lsp1109I GCAGC 7 cut(s) 22, 588, 914, 961, 1105, 1147, 2144
LweI GCATC 8 cut(s) 284, 288, 382, 498, 1080, 1491, 1532, 1797
MaeI CTAG 4 cut(s) 251, 965, 1877, 1925
MaeII ACGT 2 cut(s) 1564, 1737
MaeIII GTNAC 9 cut(s) 77, 377, 571, 1371, 1423, 1454, 1481, 2123, 2162
MboII GAAGA 7 cut(s) 60, 824, 1408, 1547, 1707, 1960, 2012
MfeI CAATTG 1 cut(s) 2046
MflI RGATCY 1 cut(s) 2210
MhlI GDGCHC 2 cut(s) 757, 1713
MlsI TGGCCA 1 cut(s) 306
MluNI TGGCCA 1 cut(s) 306
MlyI GAGTC 2 cut(s) 59, 199
MmeI TCCRAC 1 cut(s) 405
Mox20I TGGCCA 1 cut(s) 306
Mph1103I ATGCAT 5 cut(s) 303, 676, 1192, 1282, 1547
MroXI GAANNNNTTC 1 cut(s) 893
MscI TGGCCA 1 cut(s) 306
MseI TTAA 7 cut(s) 95, 828, 1212, 1218, 1245, 1530, 2202
MslI CAYNNNNRTG 3 cut(s) 146, 1127, 2171
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 2 cut(s) 767, 1096
MspI CCGG 1 cut(s) 1057
MspR9I CCNGG 4 cut(s) 914, 1085, 1172, 1833
MunI CAATTG 1 cut(s) 2046
Mva1269I GAATGC 2 cut(s) 1282, 1333
MvaI CCWGG 4 cut(s) 914, 1085, 1172, 1833
MvnI CGCG 1 cut(s) 632
MwoI GCNNNNNNNGC 2 cut(s) 272, 1708
NcoI CCATGG 1 cut(s) 790
NdeI CATATG 2 cut(s) 31, 852
NlaIV GGNNCC 3 cut(s) 1413, 1639, 1670
NmeAIII GCCGAG 3 cut(s) 562, 910, 1121
NmuCI GTSAC 8 cut(s) 77, 377, 571, 1371, 1454, 1481, 2123, 2162
NsiI ATGCAT 5 cut(s) 303, 676, 1192, 1282, 1547
NspI RCATGY 2 cut(s) 753, 1252
NspV TTCGAA 1 cut(s) 533
OliI CACNNNNGTG 1 cut(s) 1127
PagI TCATGA 1 cut(s) 1867
PciI ACATGT 1 cut(s) 1248
PcsI WCGNNNNNNNCGW 2 cut(s) 530, 629
PctI GAATGC 2 cut(s) 1282, 1333
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 4 cut(s) 428, 992, 1183, 1493
PfoI TCCNGGA 1 cut(s) 1083
PinAI ACCGGT 1 cut(s) 1056
PkrI GCNGC 7 cut(s) 37, 603, 904, 976, 1095, 1162, 2134
PleI GAGTC 2 cut(s) 59, 198
PmaCI CACGTG 1 cut(s) 1738
PmlI CACGTG 1 cut(s) 1738
PpsI GAGTC 2 cut(s) 59, 198
Ppu21I YACGTR 1 cut(s) 1738
PpuMI RGGWCCY 1 cut(s) 1591
PscI ACATGT 1 cut(s) 1248
Psp124BI GAGCTC 1 cut(s) 1713
Psp5II RGGWCCY 1 cut(s) 1591
Psp6I CCWGG 4 cut(s) 912, 1083, 1170, 1831
PspCI CACGTG 1 cut(s) 1738
PspEI GGTNACC 1 cut(s) 1423
PspGI CCWGG 4 cut(s) 912, 1083, 1170, 1831
PspN4I GGNNCC 3 cut(s) 1413, 1639, 1670
PspPI GGNCC 4 cut(s) 1110, 1174, 1591, 1669
PspPPI RGGWCCY 1 cut(s) 1591
PsuI RGATCY 1 cut(s) 2210
PvuII CAGCTG 2 cut(s) 767, 1096
RsaI GTAC 3 cut(s) 368, 950, 1253
RsaNI GTAC 3 cut(s) 367, 949, 1252
RseI CAYNNNNRTG 3 cut(s) 146, 1127, 2171
SacI GAGCTC 1 cut(s) 1713
SaqAI TTAA 7 cut(s) 95, 828, 1212, 1218, 1245, 1530, 2202
SatI GCNGC 7 cut(s) 36, 602, 903, 975, 1094, 1161, 2133
Sau96I GGNCC 4 cut(s) 1110, 1174, 1591, 1669
SchI GAGTC 2 cut(s) 59, 199
ScrFI CCNGG 4 cut(s) 914, 1085, 1172, 1833
SduI GDGCHC 2 cut(s) 757, 1713
SfaNI GCATC 8 cut(s) 284, 288, 382, 498, 1080, 1491, 1532, 1797
SfuI TTCGAA 1 cut(s) 533
SinI GGWCC 2 cut(s) 1591, 1669
SmiMI CAYNNNNRTG 3 cut(s) 146, 1127, 2171
SmlI CTYRAG 3 cut(s) 50, 952, 1577
SmoI CTYRAG 3 cut(s) 50, 952, 1577
SsiI CCGC 2 cut(s) 586, 2188
SspMI CTAG 4 cut(s) 251, 965, 1877, 1925
SstI GAGCTC 1 cut(s) 1713
StyD4I CCNGG 4 cut(s) 912, 1083, 1170, 1831
StyI CCWWGG 1 cut(s) 790
TaaI ACNGT 3 cut(s) 173, 894, 2033
TaiI ACGT 2 cut(s) 1567, 1740
TaqI TCGA 8 cut(s) 446, 533, 648, 860, 1713, 1848, 1900, 2147
TatI WGTACW 2 cut(s) 366, 1251
TfiI GAWTC 4 cut(s) 428, 992, 1183, 1493
Tru1I TTAA 7 cut(s) 95, 828, 1212, 1218, 1245, 1530, 2202
Tru9I TTAA 7 cut(s) 95, 828, 1212, 1218, 1245, 1530, 2202
TscAI CASTG 4 cut(s) 16, 67, 519, 2038
TseFI GTSAC 8 cut(s) 77, 377, 571, 1371, 1454, 1481, 2123, 2162
TseI GCWGC 7 cut(s) 35, 601, 902, 974, 1093, 1160, 2132
Tsp45I GTSAC 8 cut(s) 77, 377, 571, 1371, 1454, 1481, 2123, 2162
TspGWI ACGGA 1 cut(s) 1554
TspRI CASTG 4 cut(s) 16, 67, 519, 2038
VneI GTGCAC 1 cut(s) 753
VpaK11BI GGWCC 2 cut(s) 1591, 1669
XapI RAATTY 4 cut(s) 442, 535, 1871, 2101
XceI RCATGY 2 cut(s) 753, 1252
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 4 cut(s) 251, 965, 1877, 1925
Zsp2I ATGCAT 5 cut(s) 303, 676, 1192, 1282, 1547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.